Open Source Algorithms - Page 7

Project provides a set of concurrent building blocks (Java & C/C++) that can be used to develop parallel/multi-threaded applications. Components are grouped into 4 categories: 1.Data Structures 2. Parallel Patterns 3.Parallel functions 4.Atomics and STM

Genetic Algorithm File Fitter, GAFFitter for short, is a tool based on a genetic algorithm (GA) that tries to fit a collection of items, such as files/directories, into as few as possible volumes of a specific size (e.g. CDs or DVDs).

C++ Library of Abstract Algebra concepts and arithmetic algorithms defined in terms of these concepts, using Instigate Generic Programming Methodology. Based on this library we plan to develop Linear Algebra and Optimization concepts and algorithms.

JaQLib is a compact Java library that supports programmers in querying all sorts of collections, DBs and XML files in a compact and intuitive manner. Example: List<MyItem> result = Jaqlib.List.selectFrom(myCollection) .where(myCondition).asList()

A markup language for expressing knitting patterns which can serve as a software interchange format

SMSD is a Java based software library for calculating Maximum Common Subgraph (MCS) between small molecules. This will help us to find similarity/distance between two molecules. MCS is also used for screening drug like compounds by hitting molecules, which share common subgraph (substructure).

SketchyLISP is a highly portable, embeddable interpreter for purely applicative Scheme.

This is a tool that uses a combination between a brute force and dictionary attack on a Vigenere cipher. At present, keys are generated using brute force (will soon try passwords generated from a dictionary first). Each key is then used to decode the encoded message input. The output is analysed and then put into a ranking table. Outputs will be ranked on a variety of factors (at present, only number of dictionary words in output are counted). For the future: Better key generation, trying combinations of dictionary words with numbers. If that fails, brute force will be used. For all attempts of the dictionary attack, only keys within the known key length range will be generated. Better ranking system and analysis of possible decoded messages. Note: The version currently released, I made in an evening! It is nowhere near ready for release but is a fun project to think about and I need more ideas for improvements mentioned above. Discuss possible solutions and ideas!

A library for fixed point calculation in s15.16, s7.24 and s7.8 format, entirely written in ANSI C for embedded software (with main focus on the Atmel AVR platforms).

Colibri is a repository for source code developed in ENVI/IDL under the Open Source Initiative. It contains a wide variety of algorithms and applications which are of interest for the remote sensing community. The code is organized in a hierarchical way. At the lowest level, common code performing all kinds of basic functionality is available to the higher levels, i.e. classes and applications. Classes are object based functionalities performing more specific tasks. Both common code and classes are the building blocks for the applications which perform well delineated tasks. All common code, classes and applications are well documented. The complete set of code and documentation are available to the remote sensing community. ENVI/IDL code developers and remote sensing researchers are requested to actively contribute to this ENVI/IDL Code Library in order to obtain a solid reference of user developed applications for the remote sensing community.

A cross-platform library that computes fast and accurate SIFT image features. libsiftfast provides Octave/Matlab scripts, a command line interface, and a python interface (siftfastpy). Optimized with SIMD instructions and OpenMP .

JaNaG is a Java random name generator for role-games, authors, and the like. It is based on a name fragment database that creates relatively reasonably sounding names. It can run as applet, GUI appliance, command line tool, or on a server-client basis.

Small console application written in C to simplify boolean functions with the Quine-McCluskey algorithm

A bignum library written in the C++ programming language as templates. It provides standard mathematical operations like add, sub, mul, div, pow etc. with the big integer and big floating point numbers.

This is implementation of parallel genetic algorithm with "ring" insular topology. Algorithm provides a dynamic choice of genetic operators in the evolution of. The library supports the 26 genetic operators. This is cross-platform GA written in С++.

JMathTeX - typesetting mathematics in Java. Provides Java classes for typesetting mathematical formulas as part of your applications user interface.

MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm. ⚠️ A new version is available on https://github.com/squillero/microgp4

MultiBoost is a C++ implementation of the multi-class AdaBoost algorithm. AdaBoost is a powerful meta-learning algorithm commonly used in machine learning. The code is well documented and easy to extend, especially for adding new weak learners.

The package implements a variety of tools for categorization of multivariate data such as boosted decision trees, bagging and random forest, bump hunting (PRIM), a multi-class learner and others.

YACS (Yet Another Constraint Solver) is a Java library and an object-oriented framework for constraint solvers. It supports propagating and solving of constraint satisfaction problems with finite and infinite domains (discrete values and real intervals).

DSP Lab is a digital signal processing simulation application created to simulate and visualize process of sampling and filtering analog signal using DSP system. This application is created to provide as a tool for educator and student to visualize and understand DSP system. Source code is available at https://payhip.com/b/9mPY

This library contains generic algorithms from STL and boost.org and other sources, re-implemented using Instigate's GP methodology, based on modern principles of Generic Programming.

Open Metaheuristic (oMetah) is a library aimed at the conception and the rigourous testing of metaheuristics (i.e. genetic algorithms, simulated annealing, ...). The code design is separated in components : algorithms, problems and a test report generator

PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel.

PopED (Population Experimental Design) is a software tool for computing optimal experimental designs. The software has been developed with an emphasis on drug trials based on population models (non-linear mixed effects models).