miRge3 Files

Comprehensive analysis of small RNA sequencing data

Status: Alpha

Brought to you by: halushka-lab

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size	InfoDownloads / Week
Parent folder
mirge3-0.0.6.tar.gz	2020-11-27	475.7 kB	0
mirge3-0.0.6-py3-none-any.whl	2020-11-27	485.3 kB	0
miRge3.0 dev0.0.6.tar.gz	2020-11-27	9.3 MB	0
miRge3.0 dev0.0.6.zip	2020-11-27	9.3 MB	0
README.md	2020-11-27	547 Bytes	0
Totals: 5 Items		19.6 MB	0

Release 3.0.0

This release supports Python3 and has improved performance along with advanced graphics with additional features for processing small RNA data.

Change log:

v0.0.6 : Updated version to support cutadapt >2.6 to v3.0 and modified version checks and minor corrections in arguments and tRF output

v0.0.5 : Updated version to include and support cutadapt v3.0 and bowtie v1.3.0

v0.0.4 : Included DESeq2 R script to perform differential expression and also upgraded to support biopython version to 1.78

Source: README.md, updated 2020-11-27

You Might Also Like

Monitor your whole IT Infrastructure Icon

Monitor your whole IT Infrastructure

Know what's up and what's new: Monitor all your systems, devices, traffic and applications.

Caters to tech staff, system Administrators, and companies of any size, from small and medium sized businesses to enterprises that need their IT network to be reliable and easy to monitor in real-time. Equipped with an easy-to-use, intuitive interface with a cutting-edge monitoring engine. PRTG optimizes connections and workloads as well as reducing operational costs by avoiding outages while saving time and controlling service level agreements (SLAs).

Start Your Free PRTG Trial Now

New Relic provides the most powerful cloud-based observability platform built to help companies create more perfect software. Icon

New Relic provides the most powerful cloud-based observability platform built to help companies create more perfect software.

Get a live and in-depth view of your network, infrastructure, applications, end-user experience, machine learning models and more.

Correlate issues across your stack. Debug and collaborate from your IDE. AI assistance at every step. All in one connected experience - not a maze of charts.

Start for Free

Recommended Projects

sRNAWorkbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data
mirPRo
mirPRo is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in single-end RNA-seq data and provide useful functions such as IsomiR detection and "arm switching" identification, miRNA family quantification, and read cataloging in terms of genome annotation. mirPRo only works...
miRSeqNovel
A R based universal workflow for analysising miRNA sequencing data
Crosshub
Crosshub enables multi-way analysis of RNA-Seq, miRNA-Seq and methylome data of The Cancer Genome Atlas (TCGA) project: 1. differential expression analysis (genes, alternative transcripts and miRNA) 2. regulatory miRNA prediction (TargetScan, DIANA microT, mirSVR, PicTar, miRTarBase +...
CoverageAnalyzer
Combination of reverse transcription (RT) and deep sequencing has emerged as a powerful instrument for detection of RNA modifications, a field that has seen a recent surge in activity because of its importance in gene regulation. Recent studies yielded high-resolution RT signatures relying on...