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''' Module with helper functions for cython building and package checking (derived from NiPy) '''
import sys
import os
from os.path import join as pjoin, dirname
import zipfile
import warnings
import shutil
from distutils.cmd import Command
from distutils.command.clean import clean
from distutils.version import LooseVersion
from distutils.dep_util import newer_group
from distutils.errors import DistutilsError
from distutils.extension import Extension
from numpy.distutils.misc_util import appendpath
from numpy.distutils import log
from distutils.command.clean import clean
# Get project related strings. Please do not change this line to use
# execfile because execfile is not available in Python 3
_info_fname = pjoin('cviewer', 'info.py')
INFO_VARS = {}
exec(open(_info_fname, 'rt').read(), {}, INFO_VARS)
# Sphinx import.
# from sphinx.setup_command import BuildDoc
DOC_BUILD_DIR = os.path.join('build', 'html')
################################################################################
# Distutils Command class for installing nipy to a temporary location.
class TempInstall(Command):
temp_install_dir = os.path.join('build', 'install')
def run(self):
""" build and install nipy in a temporary location. """
install = self.distribution.get_command_obj('install')
install.install_scripts = self.temp_install_dir
install.install_base = self.temp_install_dir
install.install_platlib = self.temp_install_dir
install.install_purelib = self.temp_install_dir
install.install_data = self.temp_install_dir
install.install_lib = self.temp_install_dir
install.install_headers = self.temp_install_dir
install.run()
# Horrible trick to reload nipy with our temporary instal
for key in sys.modules.keys():
if key.startswith('nipy'):
sys.modules.pop(key, None)
sys.path.append(os.path.abspath(self.temp_install_dir))
# Pop the cwd
sys.path.pop(0)
import nipy
def initialize_options(self):
pass
def finalize_options(self):
pass
################################################################################
# Distutils Command class for API generation
class APIDocs(TempInstall):
description = \
"""generate API docs """
user_options = [
('None', None, 'this command has no options'),
]
def run(self):
# First build the project and install it to a temporary location.
TempInstall.run(self)
os.chdir('doc')
try:
# We are running the API-building script via an
# system call, but overriding the import path.
toolsdir = os.path.abspath(pjoin('..', 'tools'))
build_templates = pjoin(toolsdir, 'build_modref_templates.py')
cmd = """%s -c 'import sys; sys.path.append("%s"); sys.path.append("%s"); execfile("%s", dict(__name__="__main__"))'""" \
% (sys.executable,
toolsdir,
self.temp_install_dir,
build_templates)
os.system(cmd)
finally:
os.chdir('..')
################################################################################
# Code to copy the sphinx-generated html docs in the distribution.
def relative_path(filename):
""" Return the relative path to the file, assuming the file is
in the DOC_BUILD_DIR directory.
"""
length = len(os.path.abspath(DOC_BUILD_DIR)) + 1
return os.path.abspath(filename)[length:]
################################################################################
################################################################################
# Distutils Command class to clean
class Clean(clean):
def run(self):
clean.run(self)
api_path = os.path.join('doc', 'api', 'generated')
if os.path.exists(api_path):
print "Removing %s" % api_path
shutil.rmtree(api_path)
if os.path.exists(DOC_BUILD_DIR):
print "Removing %s" % DOC_BUILD_DIR
shutil.rmtree(DOC_BUILD_DIR)
# The command classes for distutils, used by the setup.py
cmdclass = {#'build_sphinx': MyBuildDoc,
# 'api_docs': APIDocs,
'clean': Clean,
}
# Dependency checks
def package_check(pkg_name, version=None,
optional=False,
checker=LooseVersion,
version_getter=None,
):
''' Check if package `pkg_name` is present, and correct version
Parameters
----------
pkg_name : str
name of package as imported into python
version : {None, str}, optional
minimum version of the package that we require. If None, we don't
check the version. Default is None
optional : {False, True}, optional
If False, raise error for absent package or wrong version;
otherwise warn
checker : callable, optional
callable with which to return comparable thing from version
string. Default is ``distutils.version.LooseVersion``
version_getter : {None, callable}:
Callable that takes `pkg_name` as argument, and returns the
package version string - as in::
``version = version_getter(pkg_name)``
If None, equivalent to::
mod = __import__(pkg_name); version = mod.__version__``
'''
if version_getter is None:
def version_getter(pkg_name):
mod = __import__(pkg_name)
return mod.__version__
try:
mod = __import__(pkg_name)
except ImportError:
if not optional:
raise RuntimeError('Cannot import package "%s" '
'- is it installed?' % pkg_name)
log.warn('Missing optional package "%s"; '
'you may get run-time errors' % pkg_name)
return
if not version:
return
try:
have_version = version_getter(pkg_name)
except AttributeError:
raise RuntimeError('Cannot find version for %s' % pkg_name)
if checker(have_version) < checker(version):
v_msg = 'You have version %s of package "%s"' \
' but we need version >= %s' % (
have_version,
pkg_name,
version,
)
if optional:
log.warn(v_msg + '; you may get run-time errors')
else:
raise RuntimeError(v_msg)
def generate_a_pyrex_source(self, base, ext_name, source, extension):
''' Monkey patch for numpy build_src.build_src method
Uses Cython instead of Pyrex.
Assumes Cython is present
'''
if self.inplace:
target_dir = dirname(base)
else:
target_dir = appendpath(self.build_src, dirname(base))
target_file = pjoin(target_dir, ext_name + '.c')
depends = [source] + extension.depends
# add distribution (package-wide) include directories, in order to
# pick up needed .pxd files for cython compilation
incl_dirs = extension.include_dirs[:]
dist_incl_dirs = self.distribution.include_dirs
if not dist_incl_dirs is None:
incl_dirs += dist_incl_dirs
if self.force or newer_group(depends, target_file, 'newer'):
import Cython.Compiler.Main
log.info("cythonc:> %s" % (target_file))
self.mkpath(target_dir)
options = Cython.Compiler.Main.CompilationOptions(
defaults=Cython.Compiler.Main.default_options,
include_path=incl_dirs,
output_file=target_file)
cython_result = Cython.Compiler.Main.compile(source,
options=options)
if cython_result.num_errors != 0:
raise DistutilsError("%d errors while compiling %r with Cython" \
% (cython_result.num_errors, source))
return target_file
def make_cython_ext(modulename,
has_cython=True,
include_dirs=None,
extra_c_sources=None):
''' Create Cython extension builder from module names
Returns extension for building and command class depending on
whether you want to use Cython and ``.pyx`` files for building
(`has_cython` == True) or the Cython-generated C files (`has_cython`
== False).
Assumes ``pyx`` or C file has the same path as that implied by
modulename.
Parameters
----------
modulename : string
module name, relative to setup.py path, with python dot
separators, e.g mypkg.mysubpkg.mymodule
has_cython : bool, optional
True if we have cython, False otherwise, default True
include_dirs : None or sequence
include directories
extra_c_sources : None or sequence
sequence of strings giving extra C source files
Returns
-------
ext : extension object
cmdclass : dict
command class dictionary for setup.py
Examples
--------
You will need Cython on your python path to run these tests.
>>> modulename = 'pkg.subpkg.mymodule'
>>> ext, cmdclass = make_cython_ext(modulename, True, None,['test.c'])
>>> ext.name == modulename
True
>>> pyx_src = os.path.join('pkg', 'subpkg', 'mymodule.pyx')
>>> ext.sources == [pyx_src, 'test.c']
True
>>> import Cython.Distutils
>>> cmdclass['build_ext'] == Cython.Distutils.build_ext
True
>>> ext, cmdclass = make_cython_ext(modulename, False, None, ['test.c'])
>>> ext.name == modulename
True
>>> pyx_src = os.path.join('pkg', 'subpkg', 'mymodule.c')
>>> ext.sources == [pyx_src, 'test.c']
True
>>> cmdclass
{}
'''
if include_dirs is None:
include_dirs = []
if extra_c_sources is None:
extra_c_sources = []
if has_cython:
src_ext = '.pyx'
else:
src_ext = '.c'
pyx_src = pjoin(*modulename.split('.')) + src_ext
sources = [pyx_src] + extra_c_sources
ext = Extension(modulename, sources, include_dirs = include_dirs)
if has_cython:
from Cython.Distutils import build_ext
cmdclass = {'build_ext': build_ext}
else:
cmdclass = {}
return ext, cmdclass
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