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Commits · main
cwl
Browse files
Sep 05, 2025
Merge branch 'dev' into 'main'
· dd0520ac
bart
authored
Sep 05, 2025
dd0520ac
Add CoverM, version bumps and fixes
· 27fe6dde
bart
authored
Sep 05, 2025
27fe6dde
Aug 22, 2025
Merge branch 'dev' into 'main'
· 060bd8d3
bart
authored
Aug 22, 2025
060bd8d3
Removed some default and changed some to be a less stringent
· 2af9c3db
bart
authored
Aug 22, 2025
2af9c3db
Add fastplong filter option 'qualified_quality_phred' which has quite an...
· 9a923532
bart
authored
Aug 22, 2025
9a923532
add fastplong filter option 'qualified_quality_phred' which has quite an impact
· f1c35aac
bart
authored
Aug 22, 2025
f1c35aac
fixes
· f497104a
bart
authored
Aug 22, 2025
f497104a
add fastq_rich reporting option
· b5627b9b
bart
authored
Aug 22, 2025
b5627b9b
Aug 21, 2025
Merge branch 'dev' into 'main'
· d95b1d1a
bart
authored
Aug 21, 2025
d95b1d1a
add more filtering options
· 2c27bf0f
bart
authored
Aug 21, 2025
2c27bf0f
change read input type to make it more compatible with workflows
· f357ff8b
bart
authored
Aug 21, 2025
f357ff8b
added quality filtering not only reporting
· c44161ee
bart
authored
Aug 21, 2025
c44161ee
add more filtering options
· dcf3d04d
bart
authored
Aug 21, 2025
dcf3d04d
add workflows
· 5bac5491
bart
authored
Aug 21, 2025
5bac5491
Merge branch 'dev' into 'main'
· 2f4b35e8
bart
authored
Aug 21, 2025
2f4b35e8
Added workflow and updated with replaced tools
· 8ee40aba
bart
authored
Aug 21, 2025
8ee40aba
Merge branch 'dev' into 'main'
· a96f9319
bart
authored
Aug 21, 2025
a96f9319
doc update
· f7d23f85
bart
authored
Aug 21, 2025
f7d23f85
fix
· 57fd94fc
bart
authored
Aug 21, 2025
57fd94fc
rm
· 97337619
bart
authored
Aug 21, 2025
97337619
update packed
· 6e38a006
bart
authored
Aug 21, 2025
6e38a006
Aug 20, 2025
Merge branch 'dev' into 'main'
· 492ff77d
bart
authored
Aug 20, 2025
492ff77d
Merge branch 'main' into 'dev'
· 779db632
bart
authored
Aug 20, 2025
779db632
remove v2 workflows
· 5802dee2
bart
authored
Aug 20, 2025
5802dee2
replaced DAStool with binette, ability to disable maxbin2
· cff4f7b0
bart
authored
Aug 20, 2025
cff4f7b0
change long and short read filtering workflows, remove pilon, added spades...
· c5c82e6d
bart
authored
Aug 20, 2025
c5c82e6d
replaced filtlong with fastplong, replaced minimap2-samtools reference filter...
· 3c839e38
bart
authored
Aug 20, 2025
3c839e38
replaced fastqc with sequali, replaced bbmap reference filter for hostile and...
· 8bce731b
bart
authored
Aug 20, 2025
8bce731b
changed quality filter
· 73214511
bart
authored
Aug 20, 2025
73214511
update doc link
· 8f62bb30
bart
authored
Aug 20, 2025
8f62bb30
remove medaka from test
· 5665433d
bart
authored
Aug 20, 2025
5665433d
working version
· e10f7ab6
bart
authored
Aug 20, 2025
View commits for tag v1.0.0
v1.0.0
e10f7ab6
working version
· a0cfbb7f
bart
authored
Aug 20, 2025
a0cfbb7f
Aug 18, 2025
remove unnecessary option
· b82121eb
bart
authored
Aug 18, 2025
b82121eb
Aug 08, 2025
human filter fix
· 617a2cd4
bart
authored
Aug 08, 2025
617a2cd4
fix
· 65c3e975
bart
authored
Aug 08, 2025
65c3e975
change report output names
· a38c1fe7
bart
authored
Aug 08, 2025
a38c1fe7
version bump
· 34a474df
bart
authored
Aug 08, 2025
34a474df
version bump
· 55ba498a
bart
authored
Aug 08, 2025
55ba498a
Aug 07, 2025
keep case in identifier
· bae24023
bart
authored
Aug 07, 2025
bae24023
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