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Update MergeRequestDiff#commit_shas to query metadata table

Eugenia Grieffrequested to merge
527236-update-merge-request-diff-commit-shas-2 into master

What does this MR do and why?

In MergeRequestDiff#commit_shas, we query commit SHAs from the merge_request_diff_commits table.

Since the column merge_request_diff_commits.sha will be moved to the merge_request_commits_metadata table, we need to update the method to look in this table as well.

This change applies only when merge_request_diff_commits_dedup is enabled.

References

Related to #527236

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