Commits · main · HumanGenetics AmsterdamUMC / Genome Analysis / tanuki · GitLab

Sep 29, 2025
- chore: release v2.0.5 · 131a47c3
  Roxane Boyer authored Sep 29, 2025
  
  View commits for tag v2.0.5 v2.0.5
  
  131a47c3
- Merge branch 'dev' into 'main' · 025ff4ea
  Roxane Boyer authored Sep 29, 2025
  025ff4ea
Sep 26, 2025
- Forgor the comas · 8841971a
  Roxane Boyer authored Sep 26, 2025
  
  8841971a
- fix: Added the new needed parameters --time to allow jobs to be properly... · 682989c4
  Roxane Boyer authored Sep 26, 2025
  682989c4
Sep 10, 2025
- chore: release v2.0.4 · 29dad962
  karima hajo authored Sep 10, 2025
  
  View commits for tag v2.0.4 v2.0.4
  
  29dad962
- fix: bowtie_index fpath & channel order in conda env file · 0da938ce
  karima hajo authored Sep 10, 2025
  0da938ce
Sep 01, 2025
- chore: release v2.0.3 · 73df9eb0
  Famke Schulting authored Sep 01, 2025
  
  View commits for tag v2.0.3 v2.0.3
  
  73df9eb0
- Merge branch 'dev' into 'main' · 0e6fd227
  Famke Schulting authored Sep 01, 2025
  0e6fd227
- Merge branch 'selene' into 'dev' · f2288ad1
  Famke Schulting authored Sep 01, 2025
  f2288ad1
Aug 26, 2025
- Fix: change variables for Selene · 3bef3fba
  Famke Schulting authored Aug 26, 2025
  
  3bef3fba
Apr 04, 2025
- chore: release v2.0.2 · e05c7ba2
  Roxane Boyer authored Apr 04, 2025
  
  View commits for tag v2.0.2 v2.0.2
  
  e05c7ba2
- Merge branch 'dev' into 'main' · 8f02d1d6
  Roxane Boyer authored Apr 04, 2025
  8f02d1d6
Apr 03, 2025
- Adding which tool is doing trimming · 0bf5f497
  Roxane Boyer authored Apr 03, 2025
  
  0bf5f497
- Well nevermind then · d0d01663
  Roxane Boyer authored Apr 03, 2025
  
  d0d01663
- Trying v3.0.0 ..? · cab5c75a
  Roxane Boyer authored Apr 03, 2025
  
  cab5c75a
- Updating the README with trimming step · 00631ff8
  Roxane Boyer authored Apr 03, 2025
  
  00631ff8
Apr 02, 2025
- Merge branch '25-regex-for-get_r1_fastq-not-specific-enough' into 'dev' · 28c7a911
  Roxane Boyer authored Apr 02, 2025
  28c7a911
- fix: use sample_pattern from init_workflow in both init_workflow and snakefile by moving to utils · 86ff8149
  hwalinga authored Apr 02, 2025
  
  86ff8149
- test: add test for testing when there is no illumina thingy (segement identifier) · 17324c11
  hwalinga authored Apr 02, 2025
  
  17324c11
Apr 01, 2025
- fix: fix failing test fixing #25 by making the regex more specific · cdb21365
  hwalinga authored Apr 01, 2025
  
  cdb21365
- test: add another simple test for R2 · 2d0cb4a7
  hwalinga authored Apr 01, 2025
  
  2d0cb4a7
- test: add failing test for #25 when the R1 regex is not specific enough · 7b973464
  hwalinga authored Apr 01, 2025
  
  7b973464
- refactor: seperate pure python functions · 66279650
  hwalinga authored Apr 01, 2025
  66279650
Mar 28, 2025
- chore: release v2.0.1 · 7ca57396
  Roxane Boyer authored Mar 28, 2025
  
  View commits for tag v2.0.1 v2.0.1
  
  7ca57396
- Merge branch 'dev' into 'main' · 42f71fbe
  Roxane Boyer authored Mar 28, 2025
  42f71fbe
- Removing temporarily created merged fastq · f93382f6
  Roxane Boyer authored Mar 28, 2025
  
  f93382f6
- Merge branch '23-add-trimgalore-step' into 'dev' · 392d4cd7
  Roxane Boyer authored Mar 28, 2025
  392d4cd7
- Added trimgalore step and successfully finished tests for #23 · 05aaf9b6
  Roxane Boyer authored Mar 28, 2025
  
  05aaf9b6
Mar 27, 2025
- Fixed a lil oopsie · 8ace97de
  Roxane Boyer authored Mar 27, 2025
  
  8ace97de
- -feat: Adding a new rule for trimming Illumina adapter, which increases mapping scores · e2367a62
  Roxane Boyer authored Mar 27, 2025
  
  e2367a62
Mar 26, 2025
- -feat: Adding trimgalore in tanuki env #23 · 6be73fb3
  Roxane Boyer authored Mar 26, 2025
  
  6be73fb3
Feb 05, 2025
- chore: release v2.0.0 · fb7347d9
  Roxane Boyer authored Feb 05, 2025
  
  View commits for tag v2.0.0 v2.0.0
  
  fb7347d9
- Merge branch 'dev' into 'main' · 233a6857
  Roxane Boyer authored Feb 05, 2025
  233a6857
- Merge branch 'main' into 'dev' · 5b896aef
  Roxane Boyer authored Feb 05, 2025
  5b896aef
- feat!: Allowing alignement of several files per sample corresponding at different lanes. Fixes #21 · f124f2cd
  Roxane Boyer authored Feb 05, 2025
  
  f124f2cd
Jan 31, 2025
- Merge branch 'dev' of gitlab.com:VUmc-ClinGen-Path/tanuki into dev · 8f71c4f8
  Roxane Boyer authored Jan 31, 2025
  
  8f71c4f8
- Removing old test data that was not used anymore anyway · a946b3f8
  Roxane Boyer authored Jan 31, 2025
  
  a946b3f8
Apr 23, 2024
- chore: release v1.6.0 · e3f398d6
  Roxane Boyer authored Apr 23, 2024
  
  View commits for tag v1.6.0 v1.6.0
  
  e3f398d6
- Merge branch '19-add-auto-email-to-cfg-when-pipeline-results-releases' into 'main' · 1b02b0a5
  Roxane Boyer authored Apr 23, 2024
  1b02b0a5
- feat: Adding files or auto release according to BH64 · 73286724
  Roxane Boyer authored Apr 23, 2024
  
  73286724