Commits · main · Samuel Ortion / lamme2024

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Jun 06, 2024
- Delete mac_hdd_ng.img · f6d43b29
  Samuel Ortion authored Jun 06, 2024
  
  f6d43b29
- Update README ToC · 2e1e9ce7
  Samuel Ortion authored Jun 06, 2024
  
  2e1e9ce7
Jun 05, 2024
- fix: avoid using deprecated file input type, and use a channel for fasta files · 4c89b4b2
  Samuel Ortion authored Jun 05, 2024
  
  4c89b4b2
- Rename Walktrap_test.smk into its folder · 23c63024
  Samuel Ortion authored Jun 05, 2024
  
  23c63024
- Oups, I committed fasta files · eab2e97a
  Samuel Ortion authored Jun 05, 2024
  
  eab2e97a
- way: Nextflow, why does awk return empty files? · 05dd4a04
  Samuel Ortion authored Jun 05, 2024
  
  05dd4a04
- way: try to use GUNZIP nf-core module · 7a9e1191
  Samuel Ortion authored Jun 05, 2024
  
  7a9e1191
Jun 03, 2024
- Fix contingency table: SPnT was margin total in fact · 7d213755
  Samuel Ortion authored Jun 03, 2024
  
  7d213755
- A Fisher test on adjacent genes orientation concordance · 252434a6
  Samuel Ortion authored Jun 03, 2024
  
  252434a6
May 28, 2024
- feat: Add doc submodule · 82a72b81
  Samuel Ortion authored May 28, 2024
  
  82a72b81
- Bump · aa8c47f0
  Samuel Ortion authored May 28, 2024
  
  aa8c47f0
May 27, 2024
- Update FTAG-Finder url · f6cf0bc0
  Samuel Ortion authored May 27, 2024
  
  f6cf0bc0
May 21, 2024
- Add sample ABC files · 816fadc1
  Samuel Ortion authored May 21, 2024
  
  816fadc1
- Add .rsyncignore · b7f44473
  Samuel Ortion authored May 21, 2024
  
  b7f44473
- Adding quarto notebooks and make publish rule · 357cf071
  Samuel Ortion authored May 21, 2024
  
  357cf071
May 18, 2024
- Update first1000 test results with latest fixes of FTAG-Finder Snakemake · 09615ca1
  Samuel Ortion authored May 18, 2024
  
  09615ca1
- Renamed FTAG-Finder subproject · 71f8e24e
  Samuel Ortion authored May 18, 2024
  
  71f8e24e
May 16, 2024
- Run a Snakemake workflow to assess Walktrap.R · caf5ca35
  Samuel Ortion authored May 16, 2024
  caf5ca35
- Update experiment on first 1000 sequences · e102ab10
  Samuel Ortion authored May 16, 2024
  
  e102ab10
- fix: Typo in notebook · fea8b94b
  Samuel Ortion authored May 16, 2024
  
  fea8b94b
May 15, 2024
- Add a damn slow detect_TAGs test script · ad96b45a
  Samuel Ortion authored May 15, 2024
  ad96b45a
- Add MCScanX to references · a71edc26
  Samuel Ortion authored May 15, 2024
  
  a71edc26
May 14, 2024
- Sample config for rendering of Walktrap migration notebooks · 21736b93
  Samuel Ortion authored May 14, 2024
  
  21736b93
- Add reverse rsync to Makefile · a6d5db19
  Samuel Ortion authored May 14, 2024
  
  a6d5db19
- On the way to upgrade Walktrap.R to newer igraph version · 877968c4
  Samuel Ortion authored May 14, 2024
  
  877968c4
- Update experiment, trying to run Dmel on the IFB cluster · b9d4a9c7
  Samuel Ortion authored May 14, 2024
  
  b9d4a9c7
- Update environment file · 63d2db2c
  Samuel Ortion authored May 14, 2024
  
  63d2db2c
May 06, 2024
- rename LêHoang file · 6ce0813b
  Samuel Ortion authored May 06, 2024
  
  6ce0813b
- Commit TAGs for Arabidopsis thaliana · 502f0006
  Samuel Ortion authored May 06, 2024
  
  502f0006
May 03, 2024
- feat: Add a script to parse protein ID to gene ID mapping · d5f2f07a
  Samuel Ortion authored May 03, 2024
  
  d5f2f07a
- data: Add description for Drosophila melanogaster source data · 0e61cdc1
  Samuel Ortion authored May 03, 2024
  
  0e61cdc1
- Add notebook on debugging TAG finder · a5ec8753
  Samuel Ortion authored May 03, 2024
  
  a5ec8753
- Run TAG detector with no RNA features selected · 78120a86
  Samuel Ortion authored May 03, 2024
  
  78120a86
- First FTAG-Finder.smk experiment on _Arabidopsis thaliana_ · 4c4f61d8
  Samuel Ortion authored May 03, 2024
  
  4c4f61d8
- Ran FTAG Finder on Arabidopsis thaliana · 668d8cc8
  Samuel Ortion authored May 03, 2024
  668d8cc8
May 01, 2024
- conf: update environment(s).yaml · f43a5839
  Samuel Ortion authored May 01, 2024
  
  f43a5839
- conf: pyproject to handle python namespace · 9177c6ea
  Samuel Ortion authored May 01, 2024
  
  9177c6ea
- Update references · 7aab7a33
  Samuel Ortion authored May 01, 2024
  
  7aab7a33
- Add TAIR GOslim data · 7d58d305
  Samuel Ortion authored May 01, 2024
  
  7d58d305
Apr 30, 2024
- feat: Add base quarto project · ddde66dc
  Samuel Ortion authored Apr 30, 2024
  
  ddde66dc