[go: up one dir, main page]

Huisman et al., 2018 - Google Patents

Introducing a data-standard for fluorescence microscopy: increasing data quality and fidelity for biological measurements

Huisman et al., 2018

Document ID
4144862159900770870
Author
Huisman M
Hammer M
Smith C
Grunwald D
Publication year
Publication venue
Nanoimaging and Nanospectroscopy VI

External Links

Snippet

Single-molecule detection provides ever-more powerful tools. Although technological advances have been made, smart image-processing and-analysis strategies are required for quantification, and to combat issues like unspecific background, limited signal, and …
Continue reading at www.spiedigitallibrary.org (other versions)

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using infra-red, visible or ultra-violet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6456—Spatial resolved fluorescence measurements; Imaging
    • G01N21/6458—Fluorescence microscopy
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using infra-red, visible or ultra-violet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using infra-red, visible or ultra-violet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/65—Raman scattering
    • G01N2021/653—Coherent methods [CARS]
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/36—Microscopes arranged for photographic purposes or projection purposes or digital imaging or video purposes including associated control and data processing arrangements
    • G02B21/365—Control or image processing arrangements for digital or video microscopes
    • G02B21/367—Control or image processing arrangements for digital or video microscopes providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
    • G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/16—Microscopes adapted for ultra-violet illumination; Fluorescence microscopes
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/0004—Microscopes specially adapted for specific applications
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/0096—Microscopes with photometer devices
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/06—Means for illuminating specimens
    • G02B21/08—Condensers
    • G02B21/10—Condensers affording dark-field illumination
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/34—Microscope slides, e.g. mounting specimens on microscope slides
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS, OR APPARATUS
    • G02B21/00—Microscopes
    • G02B21/24—Base structure
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING; COUNTING
    • G06F—ELECTRICAL DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/30—Information retrieval; Database structures therefor; File system structures therefor
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume, or surface-area of porous materials
    • G01N15/10—Investigating individual particles
    • G01N15/14—Electro-optical investigation, e.g. flow cytometers

Similar Documents

Publication Publication Date Title
Lee et al. A beginner’s guide to rigor and reproducibility in fluorescence imaging experiments
Heddleston et al. A guide to accurate reporting in digital image acquisition–can anyone replicate your microscopy data?
Dedecker et al. Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy
Ford et al. Large-image-format computed tomography imaging spectrometer for fluorescence microscopy
Wait et al. Hypothesis-driven quantitative fluorescence microscopy–the importance of reverse-thinking in experimental design
Cuny et al. Live cell microscopy: From image to insight
Sankaran et al. ImFCS: a software for imaging FCS data analysis and visualization
Wang et al. Numerical study of the subtraction threshold for fluorescence difference microscopy
Shorte et al. Imaging cellular and molecular biological functions
Senft et al. A biologist’s guide to planning and performing quantitative bioimaging experiments
Sebesta et al. HoloMonitor M4: holographic imaging cytometer for real-time kinetic label-free live-cell analysis of adherent cells
Huisman et al. A perspective on Microscopy Metadata: data provenance and quality control
Di Caprio et al. Hyperspectral fluorescence microfluidic (HFM) microscopy
Bush et al. Using Cell‐ID 1.4 with R for microscope‐based cytometry
Mascalchi et al. Which elements to build Co-localization workflows? From metrology to analysis
Huisman et al. Introducing a data-standard for fluorescence microscopy: increasing data quality and fidelity for biological measurements
Yuan et al. Overcoming the fundamental limitation of frequency-domain fluorescence lifetime imaging microscopy spatial resolution
Matula et al. Acquiarium: free software for the acquisition and analysis of 3D images of cells in fluorescence microscopy
Chernomoretz et al. Using Cell‐ID 1.4 with R for microscope‐based cytometry
Trask Jr et al. Standardization of high content imaging and informatics
Allier et al. Label-free cell viability assay using lens-free microscopy
Abrams et al. Tissue-like 3D standard and protocols for microscope quality management
Wu et al. Investigation of autofocus algorithms for brightfield microscopy of unstained cells
Lin et al. Calibrating fluorescence microscopy with 3D-speckler (3D fluorescence speckle analyzer)
Hsu et al. Convolutional neural networks predict mitochondrial structures from label-free microscopy images