CN107805277A - Sepiella maindroni Semen sarameters and preparation method and purposes - Google Patents
Sepiella maindroni Semen sarameters and preparation method and purposes Download PDFInfo
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Abstract
本发明公开了一种曼氏无针乌贼精子表面蛋白及其制备方法和用途,首次克隆了曼氏无针乌贼精子表面蛋白Sp17的cDNA序列全长,并根据cDNA的氨基酸序列对其物理、化学性质进行预测并构建系统进化树。通过荧光定量PCR方法对曼氏无针乌贼精子表面蛋白Sp17进行了不同组织表达特异性分析。有益效果为:本发明制备的曼氏无针乌贼精子表面蛋白Sp17,对曼氏无针乌贼精子的发生、形成起到重要的作用,并且参与顶体反应促进受精过程,对曼氏无针乌贼的生殖起到重大影响,可将其用于曼氏无针乌贼的人工生殖调控。曼氏无针乌贼精子表面蛋白Sp17还可用于癌症检测及治疗中的用途。
The invention discloses a surface protein of squid mansoni sperm and its preparation method and application. For the first time, the full-length cDNA sequence of the surface protein Sp17 of squid mansoni is cloned, and the physical and chemical analysis is performed according to the amino acid sequence of the cDNA. properties and construct phylogenetic trees. The expression specificity of different tissues was analyzed for the surface protein Sp17 of squid mansoni sperm by fluorescence quantitative PCR method. The beneficial effects are: the surface protein Sp17 of squid mansoni prepared by the present invention plays an important role in the generation and formation of squid mansoni sperm, and participates in the acrosome reaction to promote the fertilization process, and has a good effect on the spermatozoa mansoni. It has a significant impact on the reproduction of squid mansoni, and it can be used for the regulation of artificial reproduction of squid mansoni. The surface protein Sp17 of manson's needleless cuttlefish sperm can also be used in the detection and treatment of cancer.
Description
技术领域technical field
本发明涉及基因工程领域,具体是一种曼氏无针乌贼精子表面蛋白及制备方法和用途。The invention relates to the field of genetic engineering, in particular to a sperm surface protein of the squid mansoni, its preparation method and application.
背景技术Background technique
在生物体的有性生殖过程中,精子与卵细胞需要最终融合在一起形成受精卵并逐步发育为新的个体,精子细胞作为一种高度分化的单倍体细胞在结构和功能上与体细胞差异显著,它在参与受精过程中的功能都是由精子发育过程中以及发育成熟后各种相关基因特异性表达的结果,精子细胞在结构和功能上的发育成熟是一个高度有序且相当复杂的过程,多种蛋白、离子等生物因子在该过程中发挥作用。During the sexual reproduction of organisms, sperm and egg cells need to fuse together to form a fertilized egg and gradually develop into a new individual. As a highly differentiated haploid cell, sperm cells are different from somatic cells in structure and function. Notably, its function in the process of fertilization is the result of the specific expression of various related genes during sperm development and after maturation, and the development and maturation of sperm cells in terms of structure and function is a highly ordered and quite complex process. A variety of proteins, ions and other biological factors play a role in this process.
发明内容Contents of the invention
本发明的目的之一在于提供一种曼氏无针乌贼精子表面蛋白,运用分子生物学技术手段探测曼氏无针乌贼精子表面蛋白对曼氏无针乌贼精子的产生及受精过程的影响。One of the objects of the present invention is to provide a squid sperm surface protein, and use molecular biology techniques to detect the influence of the squid sperm surface protein on the production and fertilization process of squid sperm.
本发明的目的之二在于提供一种重现性好,得率高的曼氏无针乌贼精子表面蛋白的制备方法。The second object of the present invention is to provide a method for preparing the sperm surface protein of squid mansoni with good reproducibility and high yield.
本发明的目的之三在于提供一种曼氏无针乌贼精子表面蛋白的用途,将曼氏无针乌贼精子表面蛋白用于曼氏无针乌贼生殖的人工调控和癌症检测及治疗中的用途。The third object of the present invention is to provide a use of the sperm surface protein of squid mansoni, the use of the squid squid sperm surface protein in artificial regulation of squid mansoni reproduction and cancer detection and treatment.
本发明针对背景技术中提到的问题,采取的技术方案为:曼氏无针乌贼精子表面蛋白,cDNA全长1463bp,5’非编码区(UTR)92bp,3'非编码区(UTR)222bp,预测的开放阅读框(ORF)共1149bp,编码382个氨基酸,编码蛋白质相对分子质量(MW)为42.058kDa,等电点(pI)4.66。Aiming at the problems mentioned in the background technology, the present invention adopts the following technical scheme: the surface protein of squid mansoni sperm, the full length of cDNA is 1463bp, the 5' non-coding region (UTR) is 92bp, and the 3' non-coding region (UTR) is 222bp , the predicted open reading frame (ORF) is 1149bp in total, encoding 382 amino acids, the relative molecular mass (MW) of the encoded protein is 42.058kDa, and the isoelectric point ( pI ) is 4.66.
曼氏无针乌贼精子表面蛋白的制备方法,包括曼氏无针乌贼精子表面蛋白Sp17基因克隆和组织表达特异性分析。The preparation method of the sperm surface protein of the squid mansoni comprises the cloning of the Sp17 gene of the sperm surface protein of the squid mansoni and the specificity analysis of the tissue expression.
曼氏无针乌贼精子表面蛋白Sp17基因克隆包括RNA提取:取性成熟雄性曼氏无针乌贼的精巢组织,采用Trizol法提取总RNA液;RNA质量的检验:利用核酸蛋白检测仪测定总RNA液在260nm以及280nm处的吸收波长,260/280值在1.8~2.0之间为合格;cDNA第一链的合成:以检测合格的总RNA液为模板,采用反转录试剂盒进行cDNA第一链的合成;具体的加样体系以及反应条件如下:The cloning of the Sp17 gene of the sperm surface protein of squid mansoni includes RNA extraction: the testis tissue of sexually mature male squid mansoni is taken, and the total RNA solution is extracted by the Trizol method; RNA quality inspection: the total RNA solution is measured by a nucleic acid protein detector The absorption wavelength at 260nm and 280nm, the value of 260/280 is between 1.8 and 2.0 is qualified; the synthesis of the first strand of cDNA: use the qualified total RNA liquid as a template, and use the reverse transcription kit to carry out the first strand of cDNA Synthesis; specific sample addition system and reaction conditions are as follows:
200ml微量离心管中加入以下反应体系:Add the following reaction system to a 200ml microcentrifuge tube:
总RNA 2µlTotal RNA 2µl
Oligo dt 1µlOligo dt 1µl
DEPC水 3µlDEPC water 3µl
混匀后离心,并置于PCR仪内,设置温度为70℃,反应10min后立即取出,冰浴2min结束;在上述反应体系中继续加入以下试剂:After mixing, centrifuge and place in a PCR instrument, set the temperature at 70°C, take it out immediately after 10 minutes of reaction, and end the ice bath for 2 minutes; continue to add the following reagents to the above reaction system:
RNase Inhibitor (40U/l) 0.25µlRNase Inhibitor (40U/l) 0.25µl
dNTP Mixture (10mM) 0.5µldNTP Mixture (10mM) 0.5µl
M-MLV Rtase(200U/l) 0.25µlM-MLV Rtase (200U/l) 0.25µl
5×M-MLV Buffer 2.0µl5×M-MLV Buffer 2.0µl
H2O(RNase-) 7.0µlH 2 O (RNase - ) 7.0 µl
混匀后离心,于PCR仪内设定反应条件为42℃60min,70℃15min,结束后迅速取出,冰浴15min,保存至-20℃备用,长期保存则放置于-80℃冰箱。Mix well and centrifuge. Set the reaction conditions in the PCR instrument as 42°C for 60 minutes and 70°C for 15 minutes. After the end, take it out quickly, put it in an ice bath for 15 minutes, and store it at -20°C for later use. For long-term storage, place it in a -80°C refrigerator.
曼氏无针乌贼精子表面蛋白Sp17基因克隆包括核心序列的扩增:以成熟的曼氏无针乌贼雄性个体精巢组织的cDNA为模板,利用引物分别扩增得到不同长度的产物片段,该过程所涉及到的反应体系如下:The cloning of the Sp17 gene of the sperm surface protein of squid mansoni includes the amplification of the core sequence: using the cDNA of the testis tissue of the mature male squid mansoni as the template, the product fragments of different lengths were amplified by using primers respectively. The reaction system involved is as follows:
2×Es Taq MasterMix (Dye) 12.5µl2×Es Taq MasterMix (Dye) 12.5µl
Primer F 0.5µlPrimer F 0.5µl
Primer R 0.5µlPrimer R 0.5 µl
cDNA 0.5µlcDNA 0.5µl
H2O 11µlH 2 O 11 µl
PCR反应条件:95℃ 5min;94℃ 30s,55℃ 30s,72℃ 30s,反应30个循环;72℃ 7min;12℃ 5min结束;反应完成后的PCR扩增产物经过1%琼脂糖凝胶电泳检测,对存在目的条带的PCR产物进行纯化回收;所用引物及其序列为:Sp17-1F:AGCAGATGTTAGCCCTTT;Sp17-1R:CTTCAGTATCTTTGGTGCTT;Sp17-2F:TCTTCTAGAGGGTTTCGC;Sp17-2R:TGCAGGAGCTTTTACTTC;Sp17-3F:ACTAAAACTGCTGAAGAG;Sp17-3R:TGTAGCAGCAGCACTGACCT。PCR reaction conditions: 95°C for 5min; 94°C for 30s, 55°C for 30s, 72°C for 30s, 30 cycles of reaction; 72°C for 7min; 12°C for 5min; after the reaction, the PCR amplification products were electrophoresed on 1% agarose gel Detect, purify and recover the PCR product with the target band; the primers and their sequences used are: Sp17-1F: AGCAGATGTTAGCCCTTT; Sp17-1R: CTTCAGTATCTTTGGTGCTT; Sp17-2F: TCTTCTAGAGGGTTTCGC; Sp17-2R: TGCAGGAGCTTTTACTTC; Sp17-3F: ACTAAAACTGCTGAAGAG ;Sp17-3R:TGTAGCAGCAGCACTGACCT.
曼氏无针乌贼精子表面蛋白Sp17基因克隆包括曼氏无针乌贼Sp17基因5’及3’RACE扩增:利用3’RACE和5’RACE技术扩增曼氏无针乌贼Sp17基因;其中,所述Sp17基因3’RACE 所用引物为:3’-Sp17-outter:AGCAAGATCCAGGCAAGTTTTAGAGGTCA;3’-Sp17-inner:ATGCTATCGACATTGACCTAACTGACCCA;3’RACE Adapter:GCGAGCACAGAATTAATATTTTTTTTTTTT;所述Sp17基因5’RACE所用引物:5’-Sp17-outter:GCTCCGAACTGAATGA;5’-Sp17-inner:TTTTGGCTGAGCCCGTAG;5’RACE Adapter:GGCCAGGCGTCGACTAGTACGGGGGGGGGG。The cloning of the sperm surface protein Sp17 gene of squid squid mansoni includes 5' and 3' RACE amplification of squid squid mansoni Sp17 gene: using 3' RACE and 5' RACE technology to amplify the Sp17 gene of squid squid mansoni; The primers used for the 3'RACE of the Sp17 gene are: 3'-Sp17-outter: AGCAAGATCCAGGCAAGTTTTAGAGGTCA; 3'-Sp17-inner: ATGCTATCGACATTGACCTAACTGACCCA; 3'RACE Adapter: GCGAGCACAGAATTAATATTTTTTTTTTTT; Outter: GCTCCGAACTGAATGA; 5'-Sp17-inner: TTTTGGCTGAGCCCGTAG; 5'RACE Adapter: GGCCAGGCGTCGACTAGTACGGGGGGGGGG.
曼氏无针乌贼精子表面蛋白Sp17基因克隆包括cDNA全长拼接:将经过验证的Sp17核心序列以及3’和5’端序列拼接得到基因的全长cDNA序列,并根据cDNA的氨基酸序列对其物理、化学性质进行预测并构建系统进化树。The cloning of Sp17 gene of needleless cuttlefish sperm surface protein includes full-length cDNA splicing: the verified Sp17 core sequence and 3' and 5' end sequences are spliced to obtain the full-length cDNA sequence of the gene, and the physical alignment is performed according to the amino acid sequence of the cDNA. , chemical properties were predicted and a phylogenetic tree was constructed.
曼氏无针乌贼精子表面蛋白Sp17基因cDNA为:The cDNA of Sp17 gene of sperm surface protein of needleless cuttlefish is:
TGTGACCGGAGAGACTGTCGAGCACGGAATAACACGTGTACCTTGCTATTGAACTAAAGGACAAAGTTAATTCTTCGTTTTGTAAGTTAATCATGTCTGTACCCTTTTCAAACACAAAGTTGAGGGTACCCAGAGGTTTTGAGGCTCTTCTAGAGGGTTTCGCTCGTGAAGTTCTACGGGCTCAGCCAAAATGTATCATTCAGTTCGGAGCCATGCATTTCTCCAATCTTCTCAAGATTCGAACAGAAACAGGCCAAGATCCTGTTGAAGAGTGTGCTGATTTGGAAGATAGGTTCTATAACAATGATTCATTCAAGCATGAAGCTCAAGCAGATGTTAGCCCTTTTGTTGCAGAGACACAGATGGAAGCTCATGCCAGTGAAGAAGTAAAAGCTCCTGCAGAAGAGAAAGTGACTGATAATGCTCAAGAGGAAATTTCACCCAGTGACGTCACAAATGATGAAAATATTTCTGATGCTGCTACAAAGATTCAAGCTGGGTTTAAAGGATACAAGGTTCGAAAAGAAATGAAAGAACGCAAGACTGAACATTCTGAAGAGAAAACGACTGCAGGTACTATAGAAGATGCTGAAGGCACAAAAGATGCTGAAGGCACTAAAACTGCTGAAGAGGCTGCAAATGCTGAAAGCACCAAAGATACTGAAGAGGTTAAAAATGCAGAAGACACTGGAGATGCAGCAGATAATACAAAAGAACAAGAAATACCCAATGAAGAGGTTATAGATATTGACCTCAATGACCCAGAAGTGGCAAACGCTGCTAGCAAGATCCAGGCAAGTTTTAGAGGTCATAAAACCAGGAGAGATCTGCTTAGTAAGCAACAATCAGAACATCTAGAAAATGAAAAAGATGCTAACAACAGTGCAATTACAGAAGACAATGCTATCGACATTGACCTAACTGACCCAGAGGTCAGTGCTGCTGCTACAAAAATTCAAGCAATTTTTCGTGGTCATCAGARCAGGCAAAAACTTAAAGACACTCCTAAGGATCCAGCAAGTGAGAAAACCATGTCTCAAAAATCTGATAGTGCCACACCTGTTCAAGATGCTACTGGTGACCAGGGACAGGAGGATGACAAGTCTATCAACTATGAGGATCCACAGGTCCAACTGGCTGCCACTAAAATCCAAGCTGGCTTTAAAGGCTACCAAACCCGCAAGAGCCTAAAGAAGCAAGCTGGGAATTCAGAGGATCTTGAAAAGGACAGTGGATCCTAACAAGTTGGTGGATGAAAACAGATGGTGTCTTGATGGAAGAATCCTCTGTTCCTCAGTAAAGCTGATAAAATTTATTGTTCTGATATAATTATTTGTATTGATAAAATAACTCTGGTCCTATTCTTATTGGCTTTCTCCCCCTTCATAGTAAGGGAAATGTTCTGGCAAAGATAAATTTCTTATTTTCTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA。TGTGACCGGAGAGACTGTCGAGCACGGAATAACACGTGTACCTTGCTATTGAACTAAAGGACAAAGTTAATTCTTCGTTTTGTAAGTTAATCATGTCTGTACCCTTTTCAAACACAAAGTTGAGGGTACCCAGAGGTTTTGAGGCTCTTCTAGAGGGTTTCGCTCGTGAAGTTCTACGGGCTCAGCCAAAATGTATCATTCAGTTCGGAGCCATGCATTTCTCCAATCTTCTCAAGATTCGAACAGAAACAGGCCAAGATCCTGTTGAAGAGTGTGCTGATTTGGAAGATAGGTTCTATAACAATGATTCATTCAAGCATGAAGCTCAAGCAGATGTTAGCCCTTTTGTTGCAGAGACACAGATGGAAGCTCATGCCAGTGAAGAAGTAAAAGCTCCTGCAGAAGAGAAAGTGACTGATAATGCTCAAGAGGAAATTTCACCCAGTGACGTCACAAATGATGAAAATATTTCTGATGCTGCTACAAAGATTCAAGCTGGGTTTAAAGGATACAAGGTTCGAAAAGAAATGAAAGAACGCAAGACTGAACATTCTGAAGAGAAAACGACTGCAGGTACTATAGAAGATGCTGAAGGCACAAAAGATGCTGAAGGCACTAAAACTGCTGAAGAGGCTGCAAATGCTGAAAGCACCAAAGATACTGAAGAGGTTAAAAATGCAGAAGACACTGGAGATGCAGCAGATAATACAAAAGAACAAGAAATACCCAATGAAGAGGTTATAGATATTGACCTCAATGACCCAGAAGTGGCAAACGCTGCTAGCAAGATCCAGGCAAGTTTTAGAGGTCATAAAACCAGGAGAGATCTGCTTAGTAAGCAACAATCAGAACATCTAGAAAATGAAAAAGATGCTAACAACAGTGCAATTACAGAAGACAATGCTATCGACATTGACCTAACTGACCCAGAGGTCAGTGCTGCTGCTACAAAAATTCAAGCAATTTTTCGTGGTCATCAGARCAGGCAAAAACTTAAAGA CACTCCTAAGGATCCAGCAAGTGAGAAAACCATGTCTCAAAAATCTGATAGTGCCACACCTGTTCAAGATGCTACTGGTGACCAGGGACAGGAGGATGACAAGTCTATCAACTATGAGGATCCACAGGTCCAACTGGCTGCCACTAAAATCCAAGCTGGCTTTAAAGGCTACCAAACCCGCAAGAGCCTAAAGAAGCAAGCTGGGAATTCAGAGGATCTTGAAAAGGACAGTGGATCCTAACAAGTTGGTGGATGAAAACAGATGGTGTCTTGATGGAAGAATCCTCTGTTCCTCAGTAAAGCTGATAAAATTTATTGTTCTGATATAATTATTTGTATTGATAAAATAACTCTGGTCCTATTCTTATTGGCTTTCTCCCCCTTCATAGTAAGGGAAATGTTCTGGCAAAGATAAATTTCTTATTTTCTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA。
组织表达特异性分析包括提取各组织的总RNA并反转录:分别提取性成熟雄性曼氏无针乌贼的脑、视叶、肌肉、胃、鰓、肝、心、精巢、输精管、储精囊、前列腺、精荚、肠和胰的总RNA,反转录制备real-time PCR实验所需的cDNA模板;反转录之前需去除提取的总RNA中基因组DNA对于real-time PCR实验的干扰,具体步骤如下:The analysis of tissue expression specificity includes extraction of total RNA from each tissue and reverse transcription: extract the brain, optic lobe, muscle, stomach, gills, liver, heart, testis, vas deferens, seminal vesicle, The total RNA of prostate, spermatophore, intestine and pancreas was reverse transcribed to prepare the cDNA template required for real-time PCR experiments; before reverse transcription, the interference of genomic DNA in the extracted total RNA to real-time PCR experiments should be removed, specifically Proceed as follows:
200ml离心管中加入以下反应体系:Add the following reaction system to the 200ml centrifuge tube:
总RNA 1ngTotal RNA 1ng
5×gDNA Eraser Buffer 2µl5×gDNA Eraser Buffer 2µl
gDNA Eraser 1µlgDNA Eraser 1µl
水(Rnase-) 8µlWater (Rnase - ) 8µl
混匀后稍许离心,离心管置于PCR仪内,设定反应条件为:42℃ 2min,反应结束后迅速取出置于冰浴中2min。Mix well and centrifuge for a while, place the centrifuge tube in a PCR instrument, set the reaction conditions as follows: 42°C for 2 minutes, take it out quickly after the reaction and place it in an ice bath for 2 minutes.
组织表达特异性分析包括real-time PCR引物设计:根据得到的Sp17基因全长cDNA序列设计用于real-time PCR的引物,具体为:Sp17-YF:TCATTCAGTTCGGAGCCA;Sp17-YR:CCTATCTTCCAAATCAGCACA;Actin-F:TGAGAGGGAGATTGTGCGTG;Actin-R:GAACATAGATTCTGGAGCACGG。Tissue expression specific analysis includes real-time PCR primer design: design primers for real-time PCR based on the obtained Sp17 gene full-length cDNA sequence, specifically: Sp17-YF: TCATTCAGTTCGGAGCCA; Sp17-YR: CCTATCTTCCAAATCAGCACA; Actin-F : TGAGAGGGAGATTGTGCGTG; Actin-R: GAACATAGATTCTGGAGCACGG.
组织表达特异性分析包括荧光定量PCR:采用相对荧光定量的方法,选取肌肉中Sp17基因表达量作为参照,并使用曼氏无针乌贼β-actin基因(S.japonicaJN564496.1)作为内参基因,比较Sp17基因在曼氏无针乌贼脑、视叶、肌肉、胃、鰓、肝、心、精巢、输精管、储精囊、前列腺、精荚、肠和胰14种不同组织中的表达量差异,并进行差异显著性分析。The analysis of tissue expression specificity includes fluorescent quantitative PCR: using the relative fluorescent quantitative method, the expression of Sp17 gene in muscle was selected as a reference, and the squid squid β-actin gene ( S.japonica JN564496.1) was used as an internal reference gene, The expression of Sp17 gene was compared in 14 different tissues of squid squid brain, optic lobe, muscle, stomach, gill, liver, heart, testis, vas deferens, seminal vesicle, prostate, spermatophore, intestine and pancreas, and Perform a significant difference analysis.
曼氏无针乌贼精子表面蛋白,用于提高曼氏无针乌贼的生殖调控和癌症检测及治疗中的用途。Squid mansoni sperm surface protein for use in improving reproductive regulation and cancer detection and treatment of squid mansoni.
与现有技术相比,本发明的优点在于:首次克隆了曼氏无针乌贼精子表面蛋白Sp17的cDNA序列全长,并根据cDNA的氨基酸序列对其物理、化学性质进行预测并构建系统进化树。通过荧光定量PCR方法对曼氏无针乌贼精子表面蛋白Sp17进行了不同组织表达特异性分析。本发明制备的曼氏无针乌贼精子表面蛋白Sp17,对曼氏无针乌贼精子的发生、形成起到重要的作用,并且参与顶体反应促进受精过程,对曼氏无针乌贼的生殖起到重大影响,可将其用于曼氏无针乌贼的人工生殖调控。曼氏无针乌贼精子表面蛋白Sp17还可用于癌症检测及治疗中的用途。本发明制备曼氏无针乌贼精子表面蛋白Sp17的方法重现性好,得率高,特别是反转录效率明显高于现有技术。Compared with the prior art, the present invention has the advantages of cloning the full-length cDNA sequence of the sperm surface protein Sp17 of the needleless cuttlefish for the first time, predicting its physical and chemical properties and constructing a phylogenetic tree according to the amino acid sequence of the cDNA . The expression specificity of different tissues was analyzed for the surface protein Sp17 of squid mansoni sperm by fluorescence quantitative PCR method. The surface protein Sp17 of squid mansoni prepared by the invention plays an important role in the occurrence and formation of squid mansoni sperm, and participates in the acrosome reaction to promote the fertilization process, and plays a role in the reproduction of squid mansoni Significant impact, it can be used for artificial reproduction regulation of squid mansoni. The surface protein Sp17 of manson's needleless cuttlefish sperm can also be used in the detection and treatment of cancer. The method for preparing the surface protein Sp17 of the squid mansoni sperm of the present invention has good reproducibility and high yield, especially the reverse transcription efficiency is obviously higher than that of the prior art.
附图说明Description of drawings
图1为曼氏无针乌贼精巢总RNA提取电泳图;Fig. 1 is the electrophoresis picture extracted from the testis total RNA of Squid Mansoni;
图2 为Sp17基因核心片段扩增结果图;Figure 2 is a graph showing the amplification results of the core fragment of the Sp17 gene;
图3 为Sp17基因3’端扩增结果电泳图;Fig. 3 is the electrophoresis diagram of the amplification result of the 3' end of the Sp17 gene;
图4 为Sp17基因5’端扩增结果电泳图;Fig. 4 is the electrophoresis diagram of the amplification result of the 5' end of the Sp17 gene;
图5为曼氏无针乌贼Sp17基因cDNA全长;Figure 5 is the full-length cDNA of Sp17 gene of squid mansoni;
图6为跨膜区预测结果图;Figure 6 is a graph of the prediction results of the transmembrane region;
图7 为Sp17信号肽预测结果图;Figure 7 is a graph of the prediction results of the Sp17 signal peptide;
图8 为Sp17氨基酸同源性比对图;Figure 8 is a comparison diagram of Sp17 amino acid homology;
图9 为Sp17蛋白结构域比对分析图;Figure 9 is an alignment analysis diagram of Sp17 protein domains;
图10 为Sp17的二级结构预测图;Figure 10 is the secondary structure prediction diagram of Sp17;
图11为基于Sp17同源氨基酸序列构建的系统进化树;Figure 11 is a phylogenetic tree constructed based on the Sp17 homologous amino acid sequence;
图12为曼氏无针乌贼Sp17基因在不同组织的表达图。Fig. 12 is a graph showing the expression of Sp17 gene in different tissues of squid squid.
附图标记说明:图5中预测的开放阅读框用黑色线框标示出起始密码子(ATG)和终止密码子(TAA);图8中相同的氨基酸残基用黑色标示,保守氨基酸用灰色标示。Explanation of reference signs: the predicted open reading frame in Figure 5 is marked with a black line frame to mark the initiation codon (ATG) and stop codon (TAA); the same amino acid residues in Figure 8 are marked in black, and the conserved amino acids are marked in gray marked.
具体实施方式Detailed ways
下面通过附图和实施例对本发明方案作进一步说明:The scheme of the present invention is further described below by accompanying drawing and embodiment:
实施例1:Example 1:
①精巢组织总RNA的提取① Extraction of total RNA from testis tissue
1)RNA提取前的准备工作:1) Preparations before RNA extraction:
为了保证RNA提取过程不被污染而造成降解,开始提取RNA之前需要将镊子、剪刀等会直接接触到待提取RNA样本的工具进行DEPC处理,即将这些工具放置于含0.1%DEPC的水溶液中浸泡过夜,并在高温条件下灭菌30min,使用前于无水乙醇中浸泡半小时。实验中使用到的移液器枪头以及离心管均需经过无RNase处理。In order to ensure that the RNA extraction process will not be contaminated and cause degradation, before starting to extract RNA, tools such as tweezers and scissors that will directly contact the RNA sample to be extracted should be treated with DEPC, that is, these tools should be soaked overnight in an aqueous solution containing 0.1% DEPC , and sterilized at high temperature for 30 minutes, soaked in absolute ethanol for half an hour before use. The pipette tips and centrifuge tubes used in the experiment must be RNase-free.
2)RNA提取步骤:2) RNA extraction steps:
a)于1.5ml离心管中加入250mlTrizol试剂,用镊子及剪刀取保存于RNA保存液中的待提取样本约30mg浸入Trizol试剂中,迅速使用手持式电动匀浆器充分匀浆,直至组织分散,液体混浊,补加Trizol试剂至最终体积为1ml;a) Add 250ml Trizol reagent to a 1.5ml centrifuge tube, use tweezers and scissors to take about 30 mg of the sample to be extracted stored in the RNA preservation solution and immerse it in Trizol reagent, and quickly use a hand-held electric homogenizer to fully homogenize until the tissue is dispersed. If the liquid is cloudy, add Trizol reagent to a final volume of 1ml;
b)将离心管轻轻混匀,并于室温条件下静置5min,待组织充分裂解;b) Gently mix the centrifuge tube and let it stand at room temperature for 5 minutes until the tissue is fully lysed;
c)4℃条件下12000g,离心10min;c) Centrifuge at 12000g for 10min at 4°C;
d)轻取上层清液,防止搅动下层沉淀,加入到盛有200ml提前预冷的氯仿的新离心管中,剧烈震荡混匀15s,室温静置5min;d) Gently remove the supernatant to avoid agitating the lower layer to precipitate, add it to a new centrifuge tube filled with 200ml pre-cooled chloroform, shake vigorously for 15 seconds, and let stand at room temperature for 5 minutes;
e)4℃,12000g,离心15min;e) 4°C, 12000g, centrifuge for 15 minutes;
f)离心结束后可见离心管中明显的分为上中下三层,轻取上层清液加入到提前预冷的盛有500ml异丙醇的新离心管中,轻轻混匀后于-20℃条件下静置约1小时;f) After centrifugation, it can be seen that the centrifuge tube is clearly divided into upper, middle and lower layers. Gently take the supernatant and add it to a new pre-cooled centrifuge tube containing 500ml of isopropanol. Mix gently and store at -20°C. Stand for about 1 hour under the condition;
g)4℃,12000g,离心10min;g) 4°C, 12000g, centrifuge for 10min;
h)离心后可见少量附着于管底内侧的白色沉淀,除去上清,加入预冷的75%乙醇溶液1ml,吹吸均匀;h) After centrifugation, a small amount of white precipitate attached to the bottom of the tube can be seen, remove the supernatant, add 1ml of pre-cooled 75% ethanol solution, and blow evenly;
i)4℃,7500g,离心5min;i) 4°C, 7500g, centrifuge for 5min;
j)除去上清,保留沉淀,超净工作台中干燥约15~20min,直至乙醇挥干,待管壁上的沉淀变为透明时,加入20mlDEPC处理水溶解RNA。j) Remove the supernatant, keep the precipitate, and dry it in the ultra-clean workbench for about 15-20 minutes until the ethanol evaporates to dryness. When the precipitate on the tube wall becomes transparent, add 20ml of DEPC-treated water to dissolve the RNA.
3)RNA质量的检验:3) Inspection of RNA quality:
溶解于DEPC处理水的RNA利用核酸蛋白检测仪测定其在260nm以及280nm处的吸收波长,根据有关资料,260/280值在1.8~2.0之间显示所提取的RNA质量较纯,含有的杂蛋白以及多糖类物质含量较少,低于此范围的RNA不建议使用,高于2.0则说明所提取的RNA有较多降解,不适合下一步扩增基因全长cDNA实验用。测定完成后,取2~3ml上样于1%琼脂糖凝胶电泳,电泳条件设定为135V和150mA,电泳15min,在凝胶成像分析系统下扫描得到电泳结果如图1所示。取少量溶解后的RNA于核酸蛋白检测仪中测定260nm以及280nm处的吸光值,测定结果表明A260/A280比值介于1.80~2.00之间,而且电泳图显示28S条带明显。以上结果说明本次提取的精巢总RNA纯度较高,虽存在少量降解但仍适用于下一步cDNA第一链的合成反应。The RNA dissolved in DEPC treated water was measured with a nucleic acid protein detector at the absorption wavelengths at 260nm and 280nm. According to relevant data, the 260/280 value between 1.8 and 2.0 indicates that the quality of the extracted RNA is relatively pure, and the impurities contained in it are relatively pure. And the content of polysaccharides is low. RNA below this range is not recommended to be used. If it is higher than 2.0, it means that the extracted RNA is more degraded, and it is not suitable for the next step to amplify the full-length cDNA of the gene. After the measurement is completed, take 2~3ml of the sample and load it on 1% agarose gel electrophoresis. The electrophoresis conditions are set at 135V and 150mA, and the electrophoresis is performed for 15 minutes. The electrophoresis results are obtained by scanning under the gel imaging analysis system, as shown in Figure 1. Take a small amount of dissolved RNA and measure the absorbance at 260nm and 280nm in a nucleic acid and protein detector. The measurement results show that the ratio of A260/A280 is between 1.80 and 2.00, and the electropherogram shows that the 28S band is obvious. The above results indicate that the total RNA extracted from the testis is relatively high in purity, and although there is a small amount of degradation, it is still suitable for the next step of cDNA first-strand synthesis reaction.
②cDNA第一链的合成:② Synthesis of the first strand of cDNA:
该步骤采用Takara公司生产的M-MLV Reverse Transcriptase试剂盒,以曼氏无针乌贼精巢组织中提取的总RNA为模板,进行cDNA第一链的合成,具体的加样体系以及反应条件如下:In this step, the M-MLV Reverse Transcriptase kit produced by Takara Company was used to synthesize the first strand of cDNA using the total RNA extracted from the testicular tissue of Squid mansoni as a template. The specific loading system and reaction conditions were as follows:
200ml微量离心管中加入以下反应体系:Add the following reaction system to a 200ml microcentrifuge tube:
总RNA 2µlTotal RNA 2µl
Oligo dt 1µlOligo dt 1µl
DEPC水 3µlDEPC water 3µl
混匀后离心,并置于PCR仪内,设置温度为70℃,反应10min后立即取出,冰浴2min结束。在上述反应体系中继续加入以下试剂:Mix well, centrifuge, and place in a PCR instrument, set the temperature at 70°C, take it out immediately after 10 minutes of reaction, and end the ice bath for 2 minutes. Continue to add the following reagents in the above reaction system:
RNase Inhibitor (40U/l) 0.25µlRNase Inhibitor (40U/l) 0.25µl
dNTP Mixture (10mM) 0.5µldNTP Mixture (10mM) 0.5µl
M-MLV Rtase(200U/l) 0.25µlM-MLV Rtase (200U/l) 0.25µl
5×M-MLV Buffer 2.0µl5×M-MLV Buffer 2.0µl
H2O(RNase-) 7.0µlH 2 O (RNase - ) 7.0 µl
硫代糠酸甲酯 0.3µlMethyl thiofuroate 0.3µl
甲基环戊二烯 0.1µlMethylcyclopentadiene 0.1µl
混匀后离心,于PCR仪内设定反应条件为42℃60min,70℃15min,结束后迅速取出,冰浴15min,保存至-20℃备用,长期保存则放置于-80℃冰箱。本发明采用的硫代糠酸甲酯和甲基环戊二烯与反应体系中其他成分相互作用,可避免因RNA二级结构的不同而产生额外的反转录产物,并且可明显提高反转录酶的活性,提高反转录效率,提高cDNA模板起始浓度。Mix well and centrifuge. Set the reaction conditions in the PCR instrument as 42°C for 60 minutes and 70°C for 15 minutes. After the end, take it out quickly, put it in an ice bath for 15 minutes, and store it at -20°C for later use. For long-term storage, place it in a -80°C refrigerator. The methyl thiofuroate and methylcyclopentadiene used in the present invention interact with other components in the reaction system, which can avoid the production of additional reverse transcription products due to the difference in the secondary structure of RNA, and can significantly improve the efficiency of reverse transcription. Increase the activity of transcriptase, improve the efficiency of reverse transcription, and increase the initial concentration of cDNA template.
③曼氏无针乌贼Sp17基因核心序列的扩增:③ Amplification of the core sequence of the Sp17 gene of squid mansoni:
以成熟的曼氏无针乌贼雄性个体精巢组织的cDNA为模板,利用表1中引物分别扩增得到不同长度的产物片段,该过程所涉及到的反应体系如下:Using the cDNA of the testis tissue of a mature male squid mansoni as a template, the primers in Table 1 were used to amplify the product fragments of different lengths respectively. The reaction system involved in this process is as follows:
2×Es Taq MasterMix (Dye) 12.5µl2×Es Taq MasterMix (Dye) 12.5µl
Primer F 0.5µlPrimer F 0.5µl
Primer R 0.5µlPrimer R 0.5 µl
cDNA 0.5µlcDNA 0.5µl
H2O 11µlH 2 O 11 µl
PCR反应条件:95℃ 5min;94℃ 30s,55℃ 30s,72℃ 30s,反应30个循环;72℃ 7min;12℃ 5min结束;PCR reaction conditions: 95°C for 5min; 30 cycles at 94°C for 30s, 55°C for 30s, and 72°C for 30s; 72°C for 7min; 12°C for 5min to end;
表1克隆Sp17基因核心片段所用引物Table 1 The primers used for cloning the core fragment of Sp17 gene
Tab 1 Primers used for Sp17 gene clone
反应完成后的PCR扩增产物经过1%琼脂糖凝胶电泳检测,对存在目的条带的PCR产物进行纯化回收,具体操作如下:After the reaction is completed, the PCR amplification products are detected by 1% agarose gel electrophoresis, and the PCR products with the target bands are purified and recovered. The specific operations are as follows:
a)制备1%的琼脂糖凝胶,上样后电泳,电泳条件100V,150mA,20min,电泳结束后,凝胶置于凝胶成像系统扫描电泳条带并保存,用干净的刀片割取目的条带于1.5ml离心管(Rnase-)中,电子天平上称取胶条的质量,按照E.Z.N.A TM Gel Extraction Kit说明书给定的比例加入试剂1,置于56℃的恒温水浴中加热10min,期间每隔5min取出震荡混匀,加速溶解;a) Prepare 1% agarose gel, electrophoresis after loading the sample, the electrophoresis condition is 100V, 150mA, 20min, after the electrophoresis, the gel is placed in the gel imaging system to scan the electrophoresis band and save it, and cut the target with a clean blade Put the strip in a 1.5ml centrifuge tube (Rnase-), weigh the mass of the strip on an electronic balance, add reagent 1 according to the ratio given in the E.Z.N.A TM Gel Extraction Kit manual, and heat it in a constant temperature water bath at 56°C for 10 minutes. Take it out every 5 minutes and shake it to mix well to speed up the dissolution;
b)将上述溶解后的混合液全部加入到试剂盒配备的离心柱中,10000rpm离心2min;b) Add all the above dissolved mixture into the spin column equipped with the kit, and centrifuge at 10000rpm for 2min;
c)将收集管中的全部液体再次加入到离心柱中,重复上述操作一次;c) Add all the liquid in the collection tube to the spin column again, and repeat the above operation once;
d)清空收集管中的残液,并向离心柱中加入700ml的漂洗液,10000rpm离心1min,弃去废液;d) Empty the residual liquid in the collection tube, add 700ml of rinse solution to the spin column, centrifuge at 10000rpm for 1min, and discard the waste liquid;
e)再次向离心柱中加入700ml漂洗液,并离心;e) Add 700ml rinse solution to the spin column again and centrifuge;
f)换取干净的收集管,在吸附膜上均匀的滴加20mlEB洗脱液,室温静置2min,12000rpm条件下离心5min,收集得到回收的目的PCR产物片段;f) Change to a clean collection tube, evenly add 20ml of EB eluent dropwise on the adsorption membrane, let it stand at room temperature for 2 minutes, centrifuge at 12000rpm for 5 minutes, and collect the recovered target PCR product fragment;
g)取1ml回收产物使用核酸蛋白检测仪测定浓度,并送上海生工生物工程有限公司测序。经过三次PCR扩增,分别得到了长度为338bp、256bp以及336bp的目的片段,如图2所示,送样测序并最终拼接得到了曼氏无针乌贼Sp17基因的核心片段。g) Take 1ml of the recovered product to measure its concentration with a nucleic acid and protein detector, and send it to Shanghai Sangon Bioengineering Co., Ltd. for sequencing. After three times of PCR amplification, the target fragments with lengths of 338bp, 256bp and 336bp were respectively obtained, as shown in Figure 2, the samples were sent for sequencing and finally spliced to obtain the core fragment of the squid squid Sp17 gene.
④曼氏无针乌贼Sp17基因3,RACE扩增:④ RACE amplification of Sp17 gene 3 of squid mansoni:
a)3’RACE cDNA模板的制备:a) Preparation of 3'RACE cDNA template:
提取曼氏无针乌贼精巢组织的总RNA,根据SMART™ RACE cDNA Amplification Kit试剂盒建议的方法制备3’RACE模板cDNA,具体操作如下:Extract the total RNA from the testis tissue of Squid mansoni, and prepare the 3'RACE template cDNA according to the method suggested by the SMART ™ RACE cDNA Amplification Kit kit. The specific operations are as follows:
200ml微量离心管中加入以下试剂:Add the following reagents to a 200ml microcentrifuge tube:
精巢总RNA 2µlTestis total RNA 2µl
3’RACE Adapter 2µl3’RACE Adapter 2µl
H2O(Rnase-) 6µlH 2 O (Rnase-) 6 µl
震荡混匀反应体系,离心后置于PCR仪内,设定条件为70℃2min,反应结束后立即取出,冰浴2min;Shake and mix the reaction system, centrifuge and place it in a PCR instrument, set the condition at 70°C for 2 minutes, take it out immediately after the reaction, and place it in an ice bath for 2 minutes;
向上一步的微量离心管中加入以下试剂:Add the following reagents to the microcentrifuge tube from the previous step:
DTT 2µlDTT 2 µl
5×Buffer 4µl5×Buffer 4µl
dNTP Mixture(10mM) 2µldNTP Mixture (10mM) 2µl
PowerScript Reverse Transcriptase 2µlPowerScript Reverse Transcriptase 2µl
震荡混匀反应体系,离心后置于PCR仪内,设定条件:42℃1.5小时,70℃7min,反应结束后立即取出冰浴2min,经过核酸蛋白检测仪测定浓度后,稀释至合适浓度后分装于-20℃保存备用。Shake and mix the reaction system, centrifuge and place it in a PCR instrument. Set the conditions: 42°C for 1.5 hours, 70°C for 7 minutes. Immediately after the reaction, take out the ice bath for 2 minutes. After the concentration is measured by a nucleic acid and protein detector, dilute to an appropriate concentration. Aliquot and store at -20°C for later use.
b)Sp17基因3’端的扩增:b) Amplification of the 3' end of the Sp17 gene:
该过程主要是利用巢式PCR技术,扩增得到基因的3’端序列,该步反应中涉及的引物序列见下表,具体操作如下:This process mainly uses nested PCR technology to amplify the 3' end sequence of the gene. The primer sequences involved in this step reaction are shown in the table below. The specific operation is as follows:
表2 Sp17基因3’RACE 所用引物Table 2 Primers used in 3'RACE of Sp17 gene
Tab 2 Primers used for Sp17 gene 3’RACE
i)巢式一轮PCR:i) Nested round PCR:
200ml离心管中加入以下反应体系:Add the following reaction system to the 200ml centrifuge tube:
2×Es Taq MasterMix (Dye) 12.5µl2×Es Taq MasterMix (Dye) 12.5µl
3’-Sp17-outter 0.5µl3'-Sp17-outter 0.5 µl
3’RACE Adapter 0.5µl3’RACE Adapter 0.5µl
cDNA 0.5µlcDNA 0.5µl
H2O 11µlH 2 O 11 µl
混匀该体系离心后置于PCR仪内,设定反应条件为:94℃ 5min;94℃30s,60℃30s,72℃1min,反应30个循环;72℃5min;12℃5min。Mix the system and centrifuge it and place it in a PCR instrument. Set the reaction conditions as follows: 94°C for 5 minutes; 30 cycles at 94°C for 30s, 60°C for 30s, and 72°C for 1 minute; 72°C for 5 minutes; 12°C for 5 minutes.
ii)巢式二轮PCR:ii) Nested second-round PCR:
以一轮PCR产物为模板,200ml离心管中加入以下反应体系:Using a round of PCR product as a template, add the following reaction system to a 200ml centrifuge tube:
2×Es Taq MasterMix (Dye) 12.5µl2×Es Taq MasterMix (Dye) 12.5µl
3’-Sp17-outter 0.5µl3'-Sp17-outter 0.5µl
3’RACE Adapter 0.5µl3’RACE Adapter 0.5µl
一轮PCR产物 1.0µlOne-round PCR product 1.0µl
H2O 10µlH 2 O 10 µl
混匀反应体系,离心后置于PCR仪内,设定反应条件如下:94℃5min;94℃30s,60℃30s,72℃1min,反应35个循环;72℃5min;12℃5min;Mix the reaction system, centrifuge it and place it in a PCR instrument, and set the reaction conditions as follows: 94°C for 5 minutes; 94°C for 30 seconds, 60°C for 30 seconds, 72°C for 1 minute, and react for 35 cycles; 72°C for 5 minutes; 12°C for 5 minutes;
反应结束后产物经过1%琼脂糖凝胶电泳分析,条带如图3所示,目的片段长度为563bp。割取目的条带纯化回收,为提高PCR产物回收浓度,可以将多管PCR产物混合到一起,采用乙醇回收,具体方法:按照PCR产物与无水乙醇体积比1:9混合,静置5分钟后12000r/min,离心5min,弃上清,然后将沉淀用75%乙醇洗涤一次,离心后保留管底的沉淀并挥发干乙醇,加适量水溶解即可。回收后的PCR产物连接到PMD18-T载体上,挑取单菌培养,经过菌液PCR验证为阳性克隆的送至上海生工测序。After the reaction, the product was analyzed by 1% agarose gel electrophoresis, the bands are shown in Figure 3, and the target fragment length is 563bp. Cut out the target band for purification and recovery. In order to increase the recovery concentration of PCR products, multiple tubes of PCR products can be mixed together and recovered with ethanol. The specific method: mix according to the volume ratio of PCR products and absolute ethanol at 1:9, and let stand for 5 minutes Then centrifuge at 12000r/min for 5min, discard the supernatant, then wash the precipitate once with 75% ethanol, keep the precipitate at the bottom of the tube after centrifugation, evaporate the ethanol to dryness, and add an appropriate amount of water to dissolve it. The recovered PCR products were connected to the PMD18-T carrier, single bacteria were picked and cultured, and the positive clones verified by bacterial liquid PCR were sent to Shanghai Sangon for sequencing.
⑤曼氏无针乌贼Sp17基因5,RACE扩增:⑤ RACE amplification of Sp17 gene 5 of squid mansoni:
a)5’RACE模板的制备:a) Preparation of 5'RACE template:
以曼氏无针乌贼精巢总RNA为模板,反转录方法同样适用于5’RACE的模板cDNA制备,操作步骤如下:Using the total RNA of the testis of squid mansoni as the template, the reverse transcription method is also applicable to the template cDNA preparation of 5'RACE, and the operation steps are as follows:
200ml离心管中加入以下试剂:Add the following reagents to a 200ml centrifuge tube:
精巢总RNA 1.0µlTestis total RNA 1.0µl
5’RACE Adapter 1.0µl5'RACE Adapter 1.0µl
水(Rnase-) 13.5µlWater (Rnase - ) 13.5µl
混匀反应体系后离心,放置于PCR仪内,设置反应条件为70℃10min,结束后迅速取出冰浴2min。After mixing the reaction system, centrifuge it, place it in a PCR instrument, set the reaction condition to 70°C for 10 minutes, and quickly take it out of the ice bath for 2 minutes after the end.
向上一步反应结束的体系中加入以下试剂:Add the following reagents to the system where the reaction in the previous step is completed:
dNTP Mixture(10mM) 1.0µldNTP Mixture (10mM) 1.0µl
10×PCR Buffer 2.5µl10×PCR Buffer 2.5µl
0.1M DTT 2.5µl0.1M DTT 2.5µl
MgCl2(25mM) 2.5µlMgCl 2 (25mM) 2.5µl
混匀反应体系后离心,将离心管置于PCR仪内,设置反应条件为:42℃1min;取出加入SuperScript™ II RT1ml混匀离心后,放回PCR仪内,42℃50min,70℃15min反应结束,取出加入RNase mix 1ml后放回,37℃反应30min。Mix the reaction system and centrifuge, put the centrifuge tube in the PCR instrument, set the reaction conditions as follows: 42°C for 1min; take out and add SuperScript™ II RT 1ml to mix and centrifuge, put it back into the PCR instrument, react at 42°C for 50min, and 70°C for 15min After the end, take it out and add 1ml of RNase mix, put it back, and react at 37°C for 30min.
b)RACE模板cDNA的纯化b) Purification of RACE template cDNA
根据PCR产物纯化试剂盒操作方法向上一步反应结束的产物中加入5倍体积SolutionI,混合均匀后转移至离心柱中,10000rpm条件下离心1min,除去收集管中的废液,向离心柱中加入350ml的Solution II,12000rpm离心1min,重复一次;更换新的收集管,向离心柱中加入25ml DEPC处理水,室温条件下孵育1min,最后12000rpm条件下离心5min,得到纯化后的cDNA。According to the operation method of the PCR product purification kit, add 5 times the volume of Solution I to the product of the previous reaction, mix well and transfer to the spin column, centrifuge at 10000rpm for 1min, remove the waste liquid in the collection tube, and add 350ml to the spin column For Solution II, centrifuge at 12000rpm for 1min, repeat once; replace with a new collection tube, add 25ml of DEPC-treated water to the spin column, incubate at room temperature for 1min, and finally centrifuge at 12000rpm for 5min to obtain purified cDNA.
c)cDNA加尾,反应体系如下:c) cDNA tailing, the reaction system is as follows:
纯化后cDNA 20µlPurified cDNA 20µl
2mM dCTP 5µl2mM dCTP 5µl
5×Tailing Buffer 10µl5×Tailing Buffer 10µl
水(RNase-) 13µlWater (RNase-) 13µl
混匀后离心,PCR反应条件设定为:94℃ 3min,结束后迅速取出置于冰上静置2min,加入1ml TdT;37℃ 10min,65℃ 10min后结束反应,取出产物利用核酸蛋白检测仪测定浓度,并用H2O(RNase-)稀释至合适浓度,于-20℃保存备用;After mixing and centrifuging, the PCR reaction conditions are set as follows: 94°C for 3 minutes, quickly take it out and place it on ice for 2 minutes, add 1ml TdT; 37°C for 10 minutes, and 65°C for 10 minutes to end the reaction, take out the product using a nucleic acid and protein detector Measure the concentration, dilute it with H 2 O (RNase-) to an appropriate concentration, and store it at -20°C for later use;
d)Sp17基因5’端扩增:d) Amplification of the 5' end of the Sp17 gene:
5’RACE方法依然采用试剂盒推荐的巢式PCR方法进行,涉及的引物序列见下表,具体步骤如下:The 5’RACE method is still carried out using the nested PCR method recommended by the kit. The sequences of the primers involved are shown in the table below. The specific steps are as follows:
表3 Sp17基因5’RACE所用引物Table 3 Primers used in 5'RACE of Sp17 gene
Tab 3 Primers used for sp17 5’RACE
i)一轮PCR:i) One round of PCR:
200ml离心管中加入以下试剂:Add the following reagents to a 200ml centrifuge tube:
2×Es Taq MasterMix (Dye) 12.5µl2×Es Taq MasterMix (Dye) 12.5µl
5’-Sp17-outter 0.5µl5'-Sp17-outter 0.5µl
5’RACE Adapter 0.5µl5'RACE Adapter 0.5µl
cDNA 0.5µlcDNA 0.5µl
H2O 11µlH 2 O 11 µl
混匀反应体系后离心,离心管置于PCR仪中,设定反应条件如下:94℃5min;94℃30s,60℃30s,72℃30s,反应30个循环;72℃5min,12℃5min,反应结束后取出;After mixing the reaction system and centrifuging, the centrifuge tube was placed in a PCR instrument, and the reaction conditions were set as follows: 94°C for 5 minutes; 94°C for 30s, 60°C for 30s, 72°C for 30s, 30 cycles of reaction; 72°C for 5min, 12°C for 5min, Take out after the reaction is over;
ii)二轮PCR:ii) Second round of PCR:
向反应体系中加入以下试剂:Add the following reagents to the reaction system:
2×Es Taq MasterMix (Dye) 12.5µl2×Es Taq MasterMix (Dye) 12.5µl
5’-Sp17-inner 0.5µl5'-Sp17-inner 0.5µl
5’RACE Adapter 0.5µl5'RACE Adapter 0.5µl
一轮PCR产物 1µlOne-round PCR product 1µl
H2O 11µlH 2 O 11 µl
将反应体系混匀并离心,离心管置于PCR仪中,设定反应条件如下:94℃5min;94℃30s,60℃30s,72℃30s,反应35个循环;72℃5min,12℃5min,反应结束后取出;Mix the reaction system evenly and centrifuge, put the centrifuge tube in the PCR instrument, set the reaction conditions as follows: 94°C for 5 minutes; 94°C for 30s, 60°C for 30s, 72°C for 30s, 35 cycles of reaction; 72°C for 5min, 12°C for 5min , take out after the reaction;
将以上反应结束的PCR产物电泳回收目的条带,产物经过1%琼脂糖凝胶电泳分析,条带如图4所示,目的片段长度为210bp。纯化后的PCR产物连接至PMD18-T载体并转至DH5α感受态细胞中,涂板后挑取单克隆培养,菌液PCR验证后送上海生工测序。The target band was recovered by electrophoresis of the PCR product after the above reaction, and the product was analyzed by 1% agarose gel electrophoresis. The band was shown in Figure 4, and the target fragment was 210 bp in length. The purified PCR product was connected to the PMD18-T vector and transferred to DH5α competent cells. After plated, a single clone was picked and cultured. The bacterial solution was verified by PCR and sent to Shanghai Sangon for sequencing.
⑥Sp177基因cDNA全长及序列分析:⑥Sp177 gene cDNA full-length and sequence analysis:
使用DNAMAN软件对测序得到的核苷酸序列进行比对和全长拼接,得到经过验证的Sp17核心序列以及3’和5’端序列,并拼接得到基因的全长cDNA序列。使用ORFfinder(https://www.ncbi.nlm.nih.gov/orffinder/)在线工具预测基因的开放阅读框(ORF)位置,然后用DNAMAN软件将ORF区核苷酸序列翻译为相应的氨基酸序列。预测Sp17的相对分子质量和等电点使用的是在线工具Expasy-ProtParam(http://web.expasy.org/protparam/)。氨基酸亲/疏水性分析采用在线工具Expasy-ProtScale (http://web.expasy.org/cgi-bin/protscale/protscale.pl),NetPhos 3.1 Server(http://www.cbs.dtu.dk/services/NetPhos/)进行氨基酸磷酸化位点分析,scratch protein predictor(http://scratch.proteomics.ics.uci.edu/)分析氨基酸序列中二硫键位置,蛋白质二级结构预测采用Antheprot5.0软件分析,应用在线工具SignaIP(http://www.cbs.dtu.dk/services/SignalP/)对编码的氨基酸序列进行信号肽预测,并用TMHMM Server v .2.0 (http://www.cbs.dtu.dk/servi-ces/TMHMM/)进行跨膜区结构预测。应用NCBI在线工具对Sp17氨基酸序列进行Blastx和Blastn分析,并用ClustalW2(http://www.ebi.ac.uk/Tools/msa/clustalo/)对Sp17及其同源氨基酸序列进行比对,保守结构域分析采用的是NCBI的在线搜索工具Conserved domain search(https://www.ncbi.nlm.nih.gov/Structure/cdd/-wrpsb.cgi)。系统进化分析所选取的其它65条Sp17同源氨基酸序列均来自于NCBI数据库,使用MEGA5.0软件比对并用ClustalW功能对这些氨基酸序列进行初步的处理,然后使用Phylogeny.fr(http://www.phylogeny.fr/)在线网站的Gblooks功能对氨基酸序列进行保守氨基酸的分析,导出相应结果后,应用Modelgenerator软件对氨基酸替代模型进行预测,确定进化树模型参数,最后使用mrBayes软件基于贝叶斯理论构建系统进化树。PEST序列分析采用在线网站PEST FIND(http://emboss.bioinformatics.nl/cgibin/emboss/epestfind)工具。The DNAMAN software was used to compare and full-length splicing of the nucleotide sequences obtained by sequencing to obtain the verified Sp17 core sequence and 3' and 5' end sequences, and splicing to obtain the full-length cDNA sequence of the gene. Use the ORFfinder (https://www.ncbi.nlm.nih.gov/orffinder/) online tool to predict the open reading frame (ORF) position of the gene, and then use DNAMAN software to translate the nucleotide sequence of the ORF region into the corresponding amino acid sequence . The relative molecular mass and isoelectric point of Sp17 were predicted using the online tool Expasy-ProtParam (http://web.expasy.org/protparam/). Amino acid affinity/hydrophobicity analysis was performed using the online tool Expasy-ProtScale (http://web.expasy.org/cgi-bin/protscale/protscale.pl), NetPhos 3.1 Server (http://www.cbs.dtu.dk/ services/NetPhos/) for analysis of amino acid phosphorylation sites, scratch protein predictor (http://scratch.proteomics.ics.uci.edu/) for analysis of disulfide bond positions in amino acid sequences, and protein secondary structure prediction using Antheprot5.0 Software analysis, using the online tool SignaIP (http://www.cbs.dtu.dk/services/SignalP/) to predict the signal peptide of the encoded amino acid sequence, and using TMHMM Server v .2.0 (http://www.cbs. dtu.dk/servi-ces/TMHMM/) for structure prediction of the transmembrane region. Blastx and Blastn analysis of the amino acid sequence of Sp17 were performed using NCBI online tools, and Sp17 and its homologous amino acid sequences were compared with ClustalW2 (http://www.ebi.ac.uk/Tools/msa/clustalo/), the conserved structure Domain analysis uses NCBI's online search tool Conserved domain search (https://www.ncbi.nlm.nih.gov/Structure/cdd/-wrpsb.cgi). The other 65 Sp17 homologous amino acid sequences selected for phylogenetic analysis were all from the NCBI database, and the MEGA5.0 software was used for alignment and the ClustalW function was used for preliminary processing of these amino acid sequences, and then Phylogeny.fr (http://www.phylogeny.fr. .phylogeny.fr/) The Gblooks function of the online website analyzes the conservative amino acids of the amino acid sequence. After exporting the corresponding results, the Modelgenerator software is used to predict the amino acid substitution model, and the parameters of the evolutionary tree model are determined. Finally, the mrBayes software is used based on Bayesian theory Build a phylogenetic tree. PEST sequence analysis was performed using the online website PEST FIND (http://emboss.bioinformatics.nl/cgibin/emboss/epestfind) tool.
最终拼接得到的曼氏无针乌贼Sp17基因cDNA序列全长共1463bp,5’UTR区92bp,3'UTR区222bp,预测的开放阅读框1149bp,共编码382个氨基酸(图5)。跨膜区分析表明该蛋白不含跨膜区结构(图6),在线信号肽预测结果显示Sp17不含信号肽(图7),因此该蛋白可能定位于在细胞外发挥作用。编码的蛋白质相对分子质量为42.058kDa,等电点4.66,为亲水性蛋白。进一步分析发现,该蛋白氨基酸序列中存在45个可能发生磷酸化修饰的位点,虽不存在明显的二硫键,但是在34和61位氨基酸处存在潜在形成二硫键的可能。The final spliced squid squid Sp17 gene cDNA sequence has a total length of 1463bp, 92bp in the 5'UTR region, 222bp in the 3'UTR region, and a predicted open reading frame of 1149bp, encoding a total of 382 amino acids (Figure 5). The analysis of the transmembrane region showed that the protein did not contain a transmembrane region structure (Figure 6), and the online signal peptide prediction results showed that Sp17 did not contain a signal peptide (Figure 7), so the protein may be positioned to function outside the cell. The encoded protein has a relative molecular mass of 42.058kDa and an isoelectric point of 4.66, which is a hydrophilic protein. Further analysis found that there were 45 sites in the amino acid sequence of the protein that might undergo phosphorylation modification. Although there were no obvious disulfide bonds, there was a possibility of potential disulfide bond formation at amino acids 34 and 61.
使用ClustalW在线分析(http://www.ebi.ac.uk/Tools/msa/clustalw2/)Sp17氨基酸同源性,比对结果显示曼氏无针乌贼Sp17氨基酸序列和太平洋牡蛎(Crassostrea gigas XP_011412976.1)、海蜗牛(Aplysia californica XP_012936202.1)、加州双斑蛸(Octopus bimaculoides XP_014778086.1)、光滑双脐螺(Biomphalaria glabrata XP_013090015.1)、紫海胆(Strongylocentrotus purpuratus XP_011680588.1)以及囊舌虫(Saccoglossus kowalevskii XP_006818979.1)的相似性分别为36%、36%、36%、31%、44%和38%,部分氨基酸在进化中的保守情况如图8所示。对应的氨基酸保守结构域如图9所示,在曼氏无针乌贼Sp17以及其同源蛋白中均含有DD CABYR SP17结构域以及至少一个IQ结构域,而且DD CABYR SP17均出现在同一位置(12-50aa)。Using ClustalW online analysis (http://www.ebi.ac.uk/Tools/msa/clustalw2/) Sp17 amino acid homology, the comparison results showed that the Sp17 amino acid sequence of squid mansoni and Pacific oyster ( Crassostrea gigas XP_011412976. 1), sea snail ( Aplysia californica XP_012936202.1), California double-spotted octopus ( Octopus bimaculoides XP_014778086.1), smooth double navel snail ( Biomphalaria glabrata XP_013090015.1), purple sea urchin ( Strongylocentrotus purpuratus XP_018.18) and 5 ( Saccoglossus kowalevskii XP_006818979.1) similarities were 36%, 36%, 36%, 31%, 44% and 38%, respectively, and the conservation of some amino acids in evolution is shown in Figure 8. The corresponding amino acid conserved domains are shown in Figure 9. The DD CABYR SP17 domain and at least one IQ domain are contained in the squid squid Sp17 and its homologous proteins, and the DD CABYR SP17 all appear at the same position (12 -50aa).
通过对Sp17蛋白的二级结构分析发现,其蛋白中含有54%的螺旋(Helix),3%的折叠(Sheet),6%的转角(Turn)以及38%的无规则卷曲(Coil)结构,各结构在在肽链上的相对位置如图10所示。Through the analysis of the secondary structure of Sp17 protein, it is found that the protein contains 54% helix (Helix), 3% fold (Sheet), 6% turn (Turn) and 38% random coil (Coil) structure, The relative position of each structure on the peptide chain is shown in FIG. 10 .
选取65条曼氏无针乌贼Sp17氨基酸同源序列,基于贝叶斯方法构建系统进化树,结果显示曼氏无针乌贼Sp17与加州双斑蛸在进化关系上最近,其次是太平洋牡蛎、海蜗牛、紫海胆、光滑双脐螺以及紫海胆等软体动物以及棘皮动物,与人以及东非狒狒的亲缘关系最远(图11)。Selecting 65 amino acid homologous sequences of Sp17 in squid squid and constructing a phylogenetic tree based on the Bayesian method, the results showed that Sp17 in squid squid was closest to the octopus in evolution, followed by Pacific oyster and sea snail Mollusks and echinoderms such as , purple sea urchin, smooth double navel, and purple sea urchin are most distantly related to humans and East African baboons (Figure 11).
⑦提取曼氏无针乌贼不同组织中总RNA:⑦ Extraction of total RNA from different tissues of squid mansoni:
按照上述提取曼氏无针乌贼精巢总RNA的提取方法提取脑、视叶、肌肉、胃、鰓、肝、心、精巢、输精管、储精囊、前列腺、精荚、肠、胰共14个组织的总RNA,提取的RNA经过测定260/280nm处吸光度以及电泳验证合格后于-20℃保存备用。According to the above-mentioned extraction method for extracting total RNA from the testis of Squid mansoni, extract samples from 14 tissues including brain, optic lobe, muscle, stomach, gills, liver, heart, testis, vas deferens, seminal vesicle, prostate, seminal pod, intestine, and pancreas. Total RNA and extracted RNA were stored at -20°C for later use after measuring the absorbance at 260/280nm and electrophoresis verification.
⑧cDNA第一链的合成及模板稀释:⑧Synthesis of the first strand of cDNA and template dilution:
将上一步已经提取的来自不同组织的总RNA反转录制备real-time PCR实验所需的cDNA模板,具体方法参照M-MLV Reverse Transcriptase试剂使用说明书。反转录之前需去除提取的总RNA中基因组DNA对于real-time PCR实验的干扰,具体步骤如下:The total RNA extracted in the previous step from different tissues was reverse transcribed to prepare the cDNA template required for the real-time PCR experiment. For the specific method, refer to the instruction manual of the M-MLV Reverse Transcriptase reagent. Before reverse transcription, it is necessary to remove the interference of genomic DNA in the extracted total RNA on the real-time PCR experiment. The specific steps are as follows:
200ml离心管中加入以下反应体系:Add the following reaction system to the 200ml centrifuge tube:
总RNA 1ngTotal RNA 1ng
5×gDNA Eraser Buffer 2µl5×gDNA Eraser Buffer 2µl
gDNA Eraser 1µlgDNA Eraser 1µl
水(Rnase-) 8µlWater (Rnase - ) 8µl
混匀后稍许离心,离心管置于PCR仪内,设定反应条件为:42℃ 2min,反应结束后迅速取出置于冰浴中2min。接下来利用已经去除基因组DNA污染的RNA合成cDNA第一链,这一步反应需要在离心管中加入以下反应体系:Mix well and centrifuge for a while, place the centrifuge tube in a PCR instrument, set the reaction conditions as follows: 42°C for 2 minutes, take it out quickly after the reaction and place it in an ice bath for 2 minutes. Next, use the RNA that has been decontaminated by genomic DNA to synthesize the first strand of cDNA. This step requires adding the following reaction system to the centrifuge tube:
Primer script buffer 24µlPrimer script buffer 24µl
Primerscript RT enzyme mix I1µlPrimerscript RT enzyme mix I1µl
Rt primer mix 1µlRt primer mix 1µl
水(Rnase-) 14µlWater (Rnase - ) 14µl
反应体系混匀后离心,置于PCR仪内设定反应条件为:37℃ 15min,85℃5s,结束后取出反转录产物迅速置于冰浴中15min。产物保存至-20℃冰箱中备用。上机实验之前,已制备的曼氏无针乌贼不同组织cDNA需要稀释到100ng/ml的浓度,该过程需要借助于核酸蛋白检测仪测定cDNA浓度,并计算稀释倍数。The reaction system was mixed and centrifuged, and placed in a PCR instrument to set the reaction conditions: 37°C for 15 minutes, 85°C for 5s, after the end, take out the reverse transcription product and quickly place it in an ice bath for 15 minutes. The product was stored in a -20°C refrigerator for later use. Before the computer experiment, the prepared cDNA of different tissues of Squid mansoni needs to be diluted to a concentration of 100ng/ml. This process requires the use of a nucleic acid and protein detector to measure the cDNA concentration and calculate the dilution factor.
⑨real-time PCR引物设计:⑨real-time PCR primer design:
设计用于real-time PCR的引物,并选择曼氏无针乌贼β-actin基因(S.japonicaJN564496.1)作为内参基因。设计的引物之间不存在互补,不会形成二聚体、发卡结构,具体信息为:Primers for real-time PCR were designed, and the β-actin gene of squid mansoni ( S.japonica JN564496.1) was selected as an internal reference gene. There is no complementarity between the designed primers, and no dimer or hairpin structure will be formed. The specific information is:
表4 曼氏无针乌贼Sp17基因荧光定量PCR使用到的引物Table 4 Primers used in real-time quantitative PCR of Squid squid Sp17 gene
Table 4 Primers of Sp17 in S.japonicaused in quantitative real-time PCR
⑩荧光定量PCR:⑩Fluorescence quantitative PCR:
采用的是相对荧光定量的方法,选取肌肉中Sp17基因表达量作为参照,并使用曼氏无针乌贼β-actin基因(S.japonicaJN564496.1)作为内参基因,比较Sp17基因在曼氏无针乌贼脑、视叶、精巢、输精管等14种不同组织中的表达量差异。按照SYBR Permix Ex TaqTM IIKit试剂使用说明书,反应体系如下:The method of relative fluorescence quantification was adopted, the expression of Sp17 gene in muscle was selected as a reference, and the β-actin gene ( S.japonica JN564496.1) was used as an internal reference gene to compare the Sp17 gene Differences in expression levels in 14 different tissues including squid brain, optic lobe, testis, and vas deferens. According to the instruction manual of SYBR Permix Ex TaqTM IIKit reagent, the reaction system is as follows:
2×SYBR 10.0µl2×SYBR 10.0µl
Sp17-YF 0.8µlSp17-YF 0.8 µl
Sp17-YR 0.8µlSp17-YR 0.8 µl
cDNA 0.8µlcDNA 0.8µl
ROX Reference Dye II 0.4µlROX Reference Dye II 0.4µl
H2O 7.2µlH 2 O 7.2 µl
混匀后的反应体系离心后置于荧光定量PCR仪内,每个样品三个副孔。设定反应条件为:94℃30s;94 5s;59℃30s,反应40个循环;55℃~95℃,2min结束。The mixed reaction system was centrifuged and then placed in a fluorescent quantitative PCR instrument, with three auxiliary holes for each sample. Set the reaction conditions as follows: 94°C for 30s; 94°C for 5s; 59°C for 30s, 40 cycles of reaction; 55°C~95°C, 2min to end.
通过real-time PCR方法对曼氏无针乌贼脑、视叶、肌肉、胃、肠、胰、心脏、肝、鳃、精巢、输精管、前列腺、储精囊、精荚共14个组织进行了Sp17基因组织表达特异性分析,实验中选取肌肉中Sp17基因的表达量作为参照。如图12所示,Sp17基因在性成熟时期曼氏无针乌贼的精巢、储精囊中均有显著性表达(p<0.05),在脑、精荚,输精管中也具有较高的表达量,而在其它组织中表达量极低。The Sp17 gene was detected in 14 tissues including brain, optic lobe, muscle, stomach, intestine, pancreas, heart, liver, gill, testis, vas deferens, prostate, seminal vesicle, and spermatophore by real-time PCR. For tissue expression specific analysis, the expression level of Sp17 gene in muscle was selected as a reference in the experiment. As shown in Figure 12, the Sp17 gene was significantly expressed in the testes and seminal vesicles of Squid mansoni during sexual maturity ( p <0.05), and it also had higher expression levels in the brain, spermatophores, and vas deferens. However, the expression levels in other tissues were extremely low.
曼氏无针乌贼精子表面蛋白17(Sp17)基因cDNA全长1463bp,预测的开放阅读框(ORF)共1149bp,编码382个氨基酸,3’UTR区222bp, 5’UTR区92bp。预测编码蛋白的相对分子质量为42.058kDa,pI 4.66。针对该蛋白的信号肽以及跨膜区分析发现,它不存在信号肽以及跨膜区结构,不是细胞内分泌的蛋白,该蛋白氨基酸序列中含有45个的磷酸化位点,这些位点在细胞信号转导过程中发挥作用。其N端的DD CABYR SP17结构域以及位于34和61位氨基酸处潜在的形成二硫键的位点与Sp17蛋白在顶体反应过程中形成的三聚体结构有关。进一步分析发现其氨基酸序列的C端存在一个潜在的PEST位点,这与Sp17蛋白能够被剪切为分子量较小的蛋白的过程有关。肽链上的IQ基序与它能够结合卵膜透明带上的糖基分子起作用有关。而二级结构分析发现螺旋结构在整个肽链上占很大比例,特别是位于IQ结构域内。通过氨基酸同源性比对发现该蛋白在进化中并不保守,与加州双斑蛸的进化关系最近,而相似性最高仅为44%。最后通过对Sp17基因表达量的组织差异性分析,我们发现Sp17基因主要在精巢与储精囊中有显著表达,在整个性腺中的表达量较其它组织也较高,因此,结合之前的研究成果我们推测Sp17在精子的形成以及成熟过程中起作用。The full-length cDNA of the sperm surface protein 17 (Sp17) gene of the needleless cuttlefish is 1463bp, the predicted open reading frame (ORF) is 1149bp, encoding 382 amino acids, 222bp in the 3'UTR region, and 92bp in the 5'UTR region. The predicted relative molecular mass of the encoded protein is 42.058kDa, pI 4.66. Analysis of the signal peptide and transmembrane region of the protein found that it does not have a signal peptide and transmembrane region structure, and is not a protein secreted in cells. The amino acid sequence of the protein contains 45 phosphorylation sites, which are in the cell signal function in the transduction process. The N-terminal DD CABYR SP17 domain and the potential disulfide bond formation sites at the 34th and 61st amino acids are related to the trimer structure formed by the Sp17 protein during the acrosome reaction. Further analysis found that there is a potential PEST site at the C-terminus of its amino acid sequence, which is related to the process that Sp17 protein can be cleaved into smaller molecular weight proteins. The IQ motif on the peptide chain is related to its ability to bind to the glycosyl molecules on the zona pellucida of the egg membrane. The secondary structure analysis found that the helical structure accounted for a large proportion of the entire peptide chain, especially in the IQ domain. Through amino acid homology comparison, it was found that the protein is not conserved in evolution, and has the closest evolutionary relationship with California double-spot octopus, while the highest similarity is only 44%. Finally, through the tissue difference analysis of Sp17 gene expression, we found that Sp17 gene was mainly expressed significantly in the testis and seminal vesicles, and the expression level in the whole gonad was higher than that in other tissues. Therefore, combined with the previous research results, we Speculated that Sp17 plays a role in the formation and maturation of spermatozoa.
将制备得到的曼氏无针乌贼精子表面蛋白用于提高曼氏无针乌贼的生殖调控和癌症检测及治疗中的用途。The prepared squid squid sperm surface protein is used to improve the reproductive regulation of squid mansoni, and to detect and treat cancer.
本发明的操作步骤中的常规操作为本领域技术人员所熟知,在此不进行赘述。Conventional operations in the operation steps of the present invention are well known to those skilled in the art and will not be repeated here.
以上所述的实施例对本发明的技术方案进行了详细说明,应理解的是以上所述仅为本发明的具体实施例,并不用于限制本发明,凡在本发明的原则范围内所做的任何修改、补充或类似方式替代等,均应包含在本发明的保护范围之内。The embodiments described above have described the technical solutions of the present invention in detail. It should be understood that the above descriptions are only specific embodiments of the present invention, and are not intended to limit the present invention. All done within the principle scope of the present invention Any modification, supplement or substitution in a similar manner shall be included within the protection scope of the present invention.
序列表sequence listing
<110> 浙江海洋大学<110> Zhejiang Ocean University
<120> 曼氏无针乌贼精子表面蛋白及制备方法和用途<120> Sperm surface protein of Manson's needleless cuttlefish and its preparation method and use
<160> 1<160> 1
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
<210> 1<210> 1
<211> 1463<211> 1463
<212> DNA<212>DNA
<213> 曼氏无针乌贼(Sepiella japonica)<213> Sepiella japonica
<400> 1<400> 1
tgtgaccgga gagactgtcg agcacggaat aacacgtgta ccttgctatt gaactaaagg 60tgtgaccgga gagactgtcg agcacggaat aacacgtgta ccttgctatt gaactaaagg 60
acaaagttaa ttcttcgttt tgtaagttaa tcatgtctgt acccttttca aacacaaagt 120acaaagttaa ttcttcgttt tgtaagttaa tcatgtctgt acccttttca aacacaaagt 120
tgagggtacc cagaggtttt gaggctcttc tagagggttt cgctcgtgaa gttctacggg 180tgagggtacc cagaggtttt gaggctcttc tagagggttt cgctcgtgaa gttctacggg 180
ctcagccaaa atgtatcatt cagttcggag ccatgcattt ctccaatctt ctcaagattc 240ctcagccaaa atgtatcatt cagttcggag ccatgcattt ctccaatctt ctcaagattc 240
gaacagaaac aggccaagat cctgttgaag agtgtgctga tttggaagat aggttctata 300gaacagaaac aggccaagat cctgttgaag agtgtgctga tttggaagat aggttctata 300
acaatgattc attcaagcat gaagctcaag cagatgttag cccttttgtt gcagagacac 360acaatgattc attcaagcat gaagctcaag cagatgttag cccttttgtt gcagagacac 360
agatggaagc tcatgccagt gaagaagtaa aagctcctgc agaagagaaa gtgactgata 420agatggaagc tcatgccagt gaagaagtaa aagctcctgc agaagagaaa gtgactgata 420
atgctcaaga ggaaatttca cccagtgacg tcacaaatga tgaaaatatt tctgatgctg 480atgctcaaga ggaaatttca cccagtgacg tcacaaatga tgaaaatatt tctgatgctg 480
ctacaaagat tcaagctggg tttaaaggat acaaggttcg aaaagaaatg aaagaacgca 540ctacaaagat tcaagctggg tttaaaggat acaaggttcg aaaagaaatg aaagaacgca 540
agactgaaca ttctgaagag aaaacgactg caggtactat agaagatgct gaaggcacaa 600agactgaaca ttctgaagag aaaacgactg caggtactat agaagatgct gaaggcacaa 600
aagatgctga aggcactaaa actgctgaag aggctgcaaa tgctgaaagc accaaagata 660aagatgctga aggcactaaa actgctgaag aggctgcaaa tgctgaaagc accaaagata 660
ctgaagaggt taaaaatgca gaagacactg gagatgcagc agataataca aaagaacaag 720ctgaagaggt taaaaatgca gaagacactg gagatgcagc agataataca aaagaacaag 720
aaatacccaa tgaagaggtt atagatattg acctcaatga cccagaagtg gcaaacgctg 780aaatacccaa tgaagaggtt atagatattg acctcaatga cccagaagtg gcaaacgctg 780
ctagcaagat ccaggcaagt tttagaggtc ataaaaccag gagagatctg cttagtaagc 840ctagcaagat ccaggcaagt tttagaggtc ataaaaccag gagagatctg cttagtaagc 840
aacaatcaga acatctagaa aatgaaaaag atgctaacaa cagtgcaatt acagaagaca 900aacaatcaga acatctagaa aatgaaaaag atgctaacaa cagtgcaatt acagaagaca 900
atgctatcga cattgaccta actgacccag aggtcagtgc tgctgctaca aaaattcaag 960atgctatcga cattgaccta actgacccag aggtcagtgc tgctgctaca aaaattcaag 960
caatttttcg tggtcatcag arcaggcaaa aacttaaaga cactcctaag gatccagcaa 1020caatttttcg tggtcatcag arcaggcaaa aacttaaaga cactcctaag gatccagcaa 1020
gtgagaaaac catgtctcaa aaatctgata gtgccacacc tgttcaagat gctactggtg 1080gtgagaaaac catgtctcaa aaatctgata gtgccacacc tgttcaagat gctactggtg 1080
accagggaca ggaggatgac aagtctatca actatgagga tccacaggtc caactggctg 1140accagggaca ggaggatgac aagtctatca actatgagga tccacaggtc caactggctg 1140
ccactaaaat ccaagctggc tttaaaggct accaaacccg caagagccta aagaagcaag 1200ccactaaaat ccaagctggc tttaaaggct accaaacccg caagagccta aagaagcaag 1200
ctgggaattc agaggatctt gaaaaggaca gtggatccta acaagttggt ggatgaaaac 1260ctgggaattc agaggatctt gaaaaggaca gtggatccta acaagttggt ggatgaaaac 1260
agatggtgtc ttgatggaag aatcctctgt tcctcagtaa agctgataaa atttattgtt 1320agatggtgtc ttgatggaag aatcctctgt tcctcagtaa agctgataaa atttattgtt 1320
ctgatataat tatttgtatt gataaaataa ctctggtcct attcttattg gctttctccc 1380ctgatataat tatttgtatt gataaaataa ctctggtcct attcttattg gctttctccc 1380
ccttcatagt aagggaaatg ttctggcaaa gataaatttc ttattttctt taggaaaaaa 1440ccttcatagt aagggaaatg ttctggcaaa gataaatttc ttaattttctt taggaaaaaa 1440
aaaaaaaaaa aaaaaaaaaa aaa 1463aaaaaaaaaaaaaaaaaaaaaaa 1463
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| CN109868277A (en) * | 2019-03-13 | 2019-06-11 | 浙江海洋大学 | Sepiella maindroni Toll-like receptor gene and its immune defense function |
| CN110438130A (en) * | 2019-08-15 | 2019-11-12 | 浙江海洋大学 | Sepiella maindroni tnf gene and application thereof |
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