CN108486108B - Cell strain for knocking out human HMGB1 gene and application thereof - Google Patents
Cell strain for knocking out human HMGB1 gene and application thereof Download PDFInfo
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Abstract
本发明公开一种敲除人HMGB1基因的细胞株及其应用,属于分子生物学领域。本发明提供一种靶向敲除人HMGB1基因的gRNA序列,其核苷酸序列如SEQ ID NO:1所示。利用CRISPR‑Cas9技术首次在人Huh7细胞基因组上敲除HMGB1基因,使得HMGB1蛋白的表达完全丧失,获得HMGB1敲除的Huh7细胞株,且敲除细胞株形态、生长速度等方面均与对照细胞无明显差异,是较为理想的HMGB1敲除的细胞模型;且操作简便,周期短,成本低,改造后细胞株稳定,可用于研究HMGB1蛋白在自噬、凋亡、细胞炎症、病毒感染等方面的具体作用机制。本发明获得的细胞株能够显著增强乙型脑炎病毒毒株的感染。
The invention discloses a cell line knocking out human HMGB1 gene and its application, belonging to the field of molecular biology. The present invention provides a gRNA sequence for targeted knockout of human HMGB1 gene, the nucleotide sequence of which is shown in SEQ ID NO: 1. Using CRISPR-Cas9 technology to knock out the HMGB1 gene on the human Huh7 cell genome for the first time, the expression of HMGB1 protein was completely lost, and the HMGB1 knockout Huh7 cell line was obtained. It is an ideal HMGB1 knockout cell model; it is easy to operate, has a short cycle, low cost, and the modified cell line is stable. It can be used to study the role of HMGB1 protein in autophagy, apoptosis, cell inflammation, virus infection, etc. specific mechanism of action. The cell line obtained by the invention can significantly enhance the infection of the Japanese encephalitis virus strain.
Description
技术领域technical field
本发明属于分子生物学领域,涉及一种敲除人HMGB1基因的细胞株及其应用。The invention belongs to the field of molecular biology, and relates to a cell line knocking out human HMGB1 gene and its application.
背景技术Background technique
CRISPR(Clustered regularly interspaced short palindromic repeats)是细菌为了将病毒的外来入侵基因清除,进化出的特有的免疫系统---CRISPR系统,利用这个系统,细菌可以把病毒基因从自己的染色体上切除。近年来,科学家们从细菌中解析了这个系统的关键蛋白(Cas9),并掌握了这个关键蛋白的操作技术。以该关键蛋白为核心的复合物能在一段RNA的指导下,定向寻找目标DNA序列,然后编辑DNA以扰乱基因或插入想要的序列。CRISPR方法正快速超越锌指核酸酶和其他编辑工具,能够快速的对生物DNA序列进行修剪、切断、替换或添加,且操作简单,成本低廉。CRISPR (Clustered regularly interspaced short palindromic repeats) is a unique immune system evolved by bacteria in order to remove the foreign invasion genes of viruses, the CRISPR system. Using this system, bacteria can cut viral genes from their own chromosomes. In recent years, scientists have analyzed the key protein (Cas9) of this system from bacteria, and mastered the operation technology of this key protein. The complex with this key protein as the core can, under the guidance of a piece of RNA, search for the target DNA sequence, and then edit the DNA to disturb the gene or insert the desired sequence. CRISPR methods are rapidly surpassing zinc-finger nucleases and other editing tools, capable of rapidly trimming, cutting, replacing or adding biological DNA sequences with simple and low cost.
高迁移率蛋白(high-mobility group proteins,HMG proteins),广泛存在于真核生物细胞中,因其在聚丙烯凝胶电泳中的高迁移率而得名。HMG蛋白是真核细胞基因调控的动力体现者,是真核细胞内继组蛋白之后含量最为丰富的一组染色质蛋白质,它们在染色质的结构与功能及基因表达调控过程中均发挥着重要作用。HMG蛋白家族可分为HMGA、HMGB和HMGN三类亚家族。高迁移率族蛋白1(High mobile group box1,HMGB1)隶属于HMGB蛋白亚家族,是一种DNA结合蛋白,存在于细胞核与细胞质中。细胞核中,HMGB1参与DNA的复制、修复、重组、转录以及维持基因组稳定性等多种功能。胞外的HMGB1在炎症、免疫、细胞生长、增殖、死亡中均发挥重要的作用。除了核内和胞外功能,细胞质中的HMGB1还可以和多种蛋白结合,参与自噬、癌演进过程,可能还参与非传统分泌通路。在受到外部细菌感染(内毒素或内在致炎因子等)时,巨噬细胞和和单核细胞可以主动释放HMGB1;而坏死或损伤的细胞会因为细胞裂解等被动释放HMGB1。High-mobility group proteins (HMG proteins), widely present in eukaryotic cells, are named for their high mobility in polypropylene gel electrophoresis. HMG proteins are the drivers of gene regulation in eukaryotic cells, and are the most abundant group of chromatin proteins after histones in eukaryotic cells. They play an important role in the structure and function of chromatin and the regulation of gene expression. effect. The HMG protein family can be divided into three subfamilies: HMGA, HMGB and HMGN. High mobility group box 1 (HMGB1) belongs to the HMGB protein subfamily and is a DNA-binding protein that exists in the nucleus and cytoplasm. In the nucleus, HMGB1 is involved in various functions such as DNA replication, repair, recombination, transcription, and maintenance of genome stability. Extracellular HMGB1 plays an important role in inflammation, immunity, cell growth, proliferation, and death. In addition to its intranuclear and extracellular functions, HMGB1 in the cytoplasm can also bind to various proteins, participate in autophagy, cancer progression, and possibly non-traditional secretory pathways. When infected by external bacteria (endotoxins or intrinsic pro-inflammatory factors, etc.), macrophages and monocytes can actively release HMGB1; while necrotic or damaged cells passively release HMGB1 due to cell lysis.
发明内容SUMMARY OF THE INVENTION
为了克服现有技术的缺点与不足,本发明的首要目的在于提供一种靶向敲除人HMGB1基因的gRNA序列。In order to overcome the shortcomings and deficiencies of the prior art, the primary purpose of the present invention is to provide a gRNA sequence for targeted knockout of the human HMGB1 gene.
本发明的另一目的在于提供一种靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统。Another object of the present invention is to provide a CRISPR/Cas9 lentiviral system for targeted knockout of human HMGB1 gene.
本发明的另一目的在于提供上述靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统的应用。Another object of the present invention is to provide the application of the above-mentioned CRISPR/Cas9 lentivirus system for targeting the knockout of the human HMGB1 gene.
本发明的另一目的在于提供一种敲除人HMGB1基因的细胞株。Another object of the present invention is to provide a cell line knocking out the human HMGB1 gene.
本发明的再一目的在于提供上述敲除人HMGB1基因的细胞株的应用。Another object of the present invention is to provide the application of the above-mentioned human HMGB1 gene knockout cell line.
本发明的目的通过下述技术方案实现:The object of the present invention is achieved through the following technical solutions:
本发明提供一种靶向敲除人HMGB1基因的gRNA序列,其核苷酸序列为:5′-GAGTATCGCCCAAAAATCAA-3′,SEQ ID NO:1;其位于SEQ ID NO:4所示的第322~341位。The present invention provides a gRNA sequence for targeting the knockout of human HMGB1 gene, the nucleotide sequence of which is: 5'-GAGTATCGCCCAAAAATCAA-3', SEQ ID NO: 1; it is located in the 322nd ~ 341 bits.
一种靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统,含有上述靶向敲除人HMGB1基因的gRNA序列。A CRISPR/Cas9 lentiviral system for targeting the knockout of the human HMGB1 gene, comprising the above-mentioned gRNA sequence for targeting the knockout of the human HMGB1 gene.
所述的靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统的构建方法,包括如下步骤:The construction method of the CRISPR/Cas9 lentivirus system for targeting and knocking out the human HMGB1 gene includes the following steps:
(1)根据上述靶向敲除人HMGB1基因的gRNA序列,设计gHMGB1-F和gHMGB1-R,将gHMGB1-F和gHMGB1-R进行退火磷酸化后形成含有粘性末端的片段gHMGB1;(1) Design gHMGB1-F and gHMGB1-R according to the above-mentioned gRNA sequence of targeted knockout of human HMGB1 gene, and anneal and phosphorylate gHMGB1-F and gHMGB1-R to form a fragment gHMGB1 containing sticky ends;
(2)使用BsmBI酶切CRISPR/Cas9慢病毒载体LentiCRISPRv2,得到酶切后的LentiCRISPRv2载体;(2) Use BsmBI to digest the CRISPR/Cas9 lentiviral vector LentiCRISPRv2 to obtain the LentiCRISPRv2 vector after enzyme digestion;
(3)将步骤(1)的gHMGB1与酶切后的LentiCRISPRv2载体连接,得到靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统,命名为LentiCRISPRv2-HMGB1。(3) The gHMGB1 in step (1) is connected with the LentiCRISPRv2 vector after restriction enzyme digestion to obtain a CRISPR/Cas9 lentivirus system targeting the knockout of the human HMGB1 gene, which is named LentiCRISPRv2-HMGB1.
gHMGB1-F:5′-caccgGAGTATCGCCCAAAAATCAA-3′,gHMGB1-F: 5′-caccgGAGTATCGCCCAAAAATCAA-3′,
gHMGB1-R:5′-aaacTTGATTTTTGGGCGATACTCc-3′;gHMGB1-R: 5′-aaacTTGATTTTTGGGCGATACTCc-3′;
所述的靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统在制备敲除人HMGB1基因的细胞株中的应用。优选的,在制备敲除人HMGB1基因的人Huh7细胞株中的应用。The application of the CRISPR/Cas9 lentivirus system targeting the knockout of the human HMGB1 gene in the preparation of a cell line for the knockout of the human HMGB1 gene. Preferably, the application is in the preparation of a human Huh7 cell line knocking out the human HMGB1 gene.
一种敲除人HMGB1基因的细胞株,是将上述所述的靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统转染目的细胞株得到的。该细胞株是HMGB1基因沉默的细胞株,即该细胞株完全不表达HMGB1蛋白。A cell line for knocking out the human HMGB1 gene is obtained by transfecting the above-mentioned CRISPR/Cas9 lentivirus system targeting the knocking out of the human HMGB1 gene into a target cell line. The cell line is a HMGB1 gene-silenced cell line, that is, the cell line does not express the HMGB1 protein at all.
一种敲除人HMGB1基因的细胞株,通过如下步骤构建得到:A cell line knocking out the human HMGB1 gene is constructed through the following steps:
(1)将上述靶向敲除人HMGB1基因的CRISPR/Cas9慢病毒系统通过包装细胞进行包装,得到慢病毒颗粒;(1) packaging the above-mentioned CRISPR/Cas9 lentiviral system targeting the knockout of the human HMGB1 gene through packaging cells to obtain lentiviral particles;
(2)将慢病毒颗粒感染目的细胞株,得到敲除人HMGB1基因的细胞株。(2) Infecting the target cell line with lentiviral particles to obtain a cell line knocking out the human HMGB1 gene.
优选的,所述的目的细胞株为人Huh7细胞株。Preferably, the target cell line is human Huh7 cell line.
具体包括以下步骤:Specifically include the following steps:
1)在293T细胞上包装慢病毒颗粒1) Packaging lentiviral particles on 293T cells
转染293T细胞,慢病毒包装质粒LentiCRISPRv2-HMGB1:psPAX2:pMD2.G=2:2:1,收取293T包装慢病毒上清,离心后得含有慢病毒粒颗粒的悬液;293T cells were transfected with the lentivirus packaging plasmid LentiCRISPRv2-HMGB1:psPAX2:pMD2.G=2:2:1, and the 293T packaging lentivirus supernatant was collected and centrifuged to obtain a suspension containing lentiviral particles;
2)Huh7细胞感染慢病毒2) Huh7 cells were infected with lentivirus
感染Huh7细胞,DMEM完全培养基体积:含有慢病毒粒颗粒的悬液体积比=1~3:1;优选为2:1;Infect Huh7 cells, the volume of DMEM complete medium: the volume ratio of the suspension containing lentiviral particles=1~3:1; preferably 2:1;
3)嘌呤霉素筛选敲除细胞株3) Puromycin screening knockout cell line
将所收慢病毒接种Huh7细胞培养24h后,加入有效浓度的嘌呤霉素,继续培养至细胞长满后传代;利用嘌呤霉素继续筛选传代细胞,2天更换一次培养液,筛选3~5代;鉴定后得到敲除人HMGB1基因的人Huh7细胞株。After the collected lentivirus was inoculated into Huh7 cells and cultured for 24 hours, an effective concentration of puromycin was added, and the culture was continued until the cells became full and then passaged; the passaged cells were continued to be screened with puromycin, and the culture medium was replaced every 2 days, and the cells were screened for 3 to 5 generations. ; After identification, a human Huh7 cell line with knockout of the human HMGB1 gene was obtained.
步骤3)中,根据Huh7细胞的敏感性加入的嘌呤霉素的浓度为1~2μg/mL;优选为1.5μg/mL。In step 3), the concentration of puromycin added according to the sensitivity of Huh7 cells is 1-2 μg/mL; preferably 1.5 μg/mL.
所述的敲除人HMGB1基因的细胞株在病毒增殖中的应用。The application of the cell line knocking out the human HMGB1 gene in virus propagation.
所述的病毒为乙型脑炎病毒。The virus is Japanese encephalitis virus.
所述的敲除人HMGB1基因的细胞株在乙脑研究上的应用。The application of the cell line knocking out the human HMGB1 gene in the study of JE.
乙脑病毒SA14毒株在该细胞株上能大量增殖,该细胞株感染乙脑病毒SA14毒株后,与正常细胞株相比,其TCID50显著升高。JE virus SA14 strain can proliferate on this cell line, and the TCID 50 of JE B virus SA14 strain is significantly higher than that of normal cell line after this cell line is infected with JE B virus SA14 strain.
所述的乙脑即流行性乙型脑炎(Japanese encephalitis,简称乙脑)。The JE is Japanese encephalitis (JE for short).
本发明的机理是:The mechanism of the present invention is:
Huh7是人类肝癌的传代细胞株,利用CRISPR/Cas9系统,在Huh7细胞中敲除HMGB1基因使其丧失该蛋白的表达,用于研究HMGB1蛋白在自噬、凋亡、细胞炎症、病毒感染等方面的具体作用机制。此前未见报道过关于HMGB1敲除的Huh7细胞株,而且本发明筛选出的细胞敲除细胞株能够稳定传代,该敲除细胞株在细胞形态、生长速度等方面均与对照细胞无明显的差异,可作为理想的细胞模型。本发明公开的HMGB1基因敲除的人Huh7细胞株已证实能够显著增强乙型脑炎病毒SA14毒株的感染。Huh7 is a passaged cell line of human liver cancer. Using the CRISPR/Cas9 system, the HMGB1 gene was knocked out in Huh7 cells to lose the expression of this protein. specific mechanism of action. The Huh7 cell line with HMGB1 knockout has not been reported before, and the knockout cell line screened by the present invention can be stably passaged, and the knockout cell line has no obvious difference from the control cells in terms of cell shape, growth rate, etc. , can be used as an ideal cell model. The HMGB1 gene knockout human Huh7 cell line disclosed in the present invention has been proved to be able to significantly enhance the infection of the Japanese encephalitis virus SA14 strain.
本发明相对于现有技术具有如下的优点及效果:Compared with the prior art, the present invention has the following advantages and effects:
1)利用CRISPR-Cas9技术首次在人Huh7细胞基因组上敲除HMGB1基因,使得HMGB1基因完全丧失该蛋白的表达,获得HMGB1敲除的Huh7细胞株,操作简便,周期短,成本低,改造后细胞株稳定,可用于研究HMGB1蛋白在自噬、凋亡、细胞炎症、病毒感染等方面的具体作用机制;1) Using CRISPR-Cas9 technology to knock out the HMGB1 gene on the genome of human Huh7 cells for the first time, so that the expression of the HMGB1 gene is completely lost, and the Huh7 cell line with HMGB1 knockout is obtained. The operation is simple, the cycle is short, the cost is low, and the transformed cells The strain is stable and can be used to study the specific mechanism of HMGB1 protein in autophagy, apoptosis, cell inflammation, virus infection, etc.;
2)从基因、蛋白水平两方面检测都发现HMGB1蛋白已被敲除,说明HMGB1蛋白序列已被彻底改变,造成了HMGB1功能的彻底丧失,且敲除细胞株形态、生长速度等方面均与对照细胞无明显差异,是较为理想的HMGB1敲除的细胞模型;2) The HMGB1 protein was found to have been knocked out from both the gene and protein levels, indicating that the HMGB1 protein sequence had been completely changed, resulting in a complete loss of HMGB1 function, and the shape and growth rate of the knockout cell line were comparable to those of the control. There is no significant difference in cells, which is an ideal cell model for HMGB1 knockout;
3)乙脑病毒能在该细胞株上能大量增殖,该细胞株感染乙脑病毒毒株后,与正常细胞株相比,其TCID50显著升高;能够显著增强乙型脑炎病毒毒株的感染。3) Japanese encephalitis virus can proliferate in large quantities on this cell strain, after this cell strain is infected with Japanese encephalitis virus strain, compared with normal cell strains, its TCID 50 is significantly elevated; can significantly enhance Japanese encephalitis virus strain infection.
附图说明Description of drawings
图1是目的片段gHMGB1插入LentiCRISPRv2载体图谱。Figure 1 is a map of the target fragment gHMGB1 inserted into the LentiCRISPRv2 vector.
图2是构建的LentiCRISPRv2-HMGB1质粒测序结果图。Figure 2 is a diagram of the sequencing results of the constructed LentiCRISPRv2-HMGB1 plasmid.
图3是敲除细胞株测序出现插入和缺失导致移码突变图。Figure 3 is a picture of frameshift mutations caused by insertion and deletion in knockout cell line sequencing.
图4是HMGB1蛋白在敲除细胞株和对照细胞株中表达的WB检测图。Figure 4 is a WB detection chart of the expression of HMGB1 protein in knockout cell lines and control cell lines.
图5是敲除细胞株和对照细胞株形态上无明显差异图。Figure 5 is a graph showing no significant difference in morphology between the knockout cell line and the control cell line.
图6是乙型脑炎SA14毒株感染敲除细胞株测得TCID50显著高于对照细胞株。Figure 6 shows that the TCID 50 of the knockout cell line infected with the Japanese encephalitis SA14 strain was significantly higher than that of the control cell line.
具体实施方式Detailed ways
下面结合实施例及附图对本发明作进一步详细的描述,但本发明的实施方式不限于此。The present invention will be described in further detail below with reference to the embodiments and the accompanying drawings, but the embodiments of the present invention are not limited thereto.
实施例中未注明具体条件的实验方法,通常按照常规条件,如Sambrook等分子克隆实验手册(Sambrook J&Russell DW,Molecular Cloning:a Laboratory Manual,2001),或按照制造厂商说明书建议的条件。The experimental method of unreceipted specific conditions in the embodiment, usually according to conventional conditions, such as molecular cloning experimental manuals such as Sambrook (Sambrook J & Russell DW, Molecular Cloning: a Laboratory Manual, 2001), or according to the conditions suggested by the manufacturer's instructions.
实施例1构建HMGB1基因敲除的慢病毒颗粒Example 1 Construction of HMGB1 gene knockout lentiviral particles
1)构建LentiCRISPRv2-HMGB1质粒1) Construction of LentiCRISPRv2-HMGB1 plasmid
根据The genome-scale CRISPR knock-out(GeCKO)libraries选择靶标HMGB1基因的gRNA序列:5′-GAGTATCGCCCAAAAATCAA-3′。按照LentiViral CRISPR Toolbox,将HMGB1基因的gRNA克隆到LentiCRISPRv2(购自addgene,货号#98290)上(图1),所构建质粒命名为LentiCRISPRv2-HMGB1。HMGB1基因的编码序列如SEQ ID NO:4所示,其中,HMGB1CDS:CCDS9335.1。The gRNA sequence of the target HMGB1 gene was selected according to The genome-scale CRISPR knock-out (GeCKO) libraries: 5′-GAGTATCGCCCAAAAATCAA-3′. According to LentiViral CRISPR Toolbox, the gRNA of HMGB1 gene was cloned into LentiCRISPRv2 (purchased from addgene, catalog number #98290) (Figure 1), and the constructed plasmid was named LentiCRISPRv2-HMGB1. The coding sequence of HMGB1 gene is shown in SEQ ID NO: 4, wherein, HMGB1CDS:CCDS9335.1.
根据LentiCRISPRv2载体连接末端的序列特点,设计合成上下游引物序列:Design and synthesize upstream and downstream primer sequences according to the sequence characteristics of the ligated ends of the LentiCRISPRv2 vector:
gHMGB1-F:5′-caccgGAGTATCGCCCAAAAATCAA-3′,gHMGB1-F: 5′-caccgGAGTATCGCCCAAAAATCAA-3′,
gHMGB1-R:5′-aaacTTGATTTTTGGGCGATACTCc-3′;gHMGB1-R: 5′-aaacTTGATTTTTGGGCGATACTCc-3′;
将其按照固定的程序进行退火磷酸化后形成含有粘性末端的片段gHMGB1(25bp)。It was annealed and phosphorylated according to a fixed program to form a fragment gHMGB1 (25bp) containing sticky ends.
退火体系(50μL):Annealing system (50 μL):
退火程序:95℃、5min,每一分钟下降一度至25℃。Annealing program: 95°C, 5min, drop once every minute to 25°C.
将含有粘性末端的片段gHMGB1连接到经过BsmBI酶切后的LentiCRISPRv2载体上,连接产物转化Stbl3感受态细胞(Stbl3感受态细胞的使用根据商品说明书进行,Stbl3购自北京全式金生物技术有限公司,货号CD512-01)经37℃培养过夜,菌液PCR电泳检测得到多个阳性克隆菌,测序结果显示目标序列成功连入载体(图2)。The fragment gHMGB1 containing sticky ends was connected to the LentiCRISPRv2 vector after BsmBI digestion, and the ligation product was transformed into Stbl3 competent cells (the use of Stbl3 competent cells was carried out according to the commercial instructions, and Stbl3 was purchased from Beijing Quanshijin Biotechnology Co., Ltd., Item number CD512-01) was cultured at 37°C overnight, and multiple positive clones were obtained by PCR electrophoresis of bacterial liquid. The sequencing results showed that the target sequence was successfully connected to the vector (Figure 2).
正确的阳性克隆菌液按1:500比例接种于具有Amp+抗性的LB液体培养基中,置37℃摇床中,180r/min振荡培养14~16h后,按照E.Z.N.A.Endo-free Plasmid Midi KitⅡ说明书进行去内毒素质粒抽提即得到LentiCRISPRv2-HMGB1质粒。The correct positive clones were inoculated into the LB liquid medium with Amp + resistance at a ratio of 1:500, placed in a shaker at 37 °C, and incubated at 180 r/min for 14-16 h. Follow the instructions of EZNA Endo-free Plasmid Midi Kit II. The LentiCRISPRv2-HMGB1 plasmid was obtained by extracting the endotoxin-depleted plasmid.
酶切体系(50μL):Enzyme digestion system (50μL):
酶切反应条件:55℃酶切2h。Reaction conditions for digestion: 55°C for 2h.
连接体系(20μL):Ligation system (20 μL):
连接反应条件:16℃过夜连接。Ligation reaction conditions: ligation overnight at 16°C.
2)慢病毒颗粒包装2) Lentiviral particle packaging
将293T细胞(购自上海中科院细胞库)铺至60mm的细胞培养皿中,细胞生长至70~80%进行转染。转染前细胞换入1mL预热的无血清培养基(DMEM)。首先,将6μgLentiCRISPRv2-HMGB1表达载体质粒与6μg psPAX2(购自addgene,货号#12260)和3μgpMD2.G(购自addgene,货号#12259)辅助质粒加入1mL DMEM中,混匀。然后,用HBS(配制的HBS平衡盐溶液,Balanced Salt Solution)将100μM的PEI(聚乙烯亚胺)储存液稀释成10μM,充分混匀。然后取稀释好的100μL 10μM PEI溶液加至上述含有质粒的DMEM中,充分混匀后室温静置5~10min。最后,将这混合液逐滴加入待转染的293T细胞上,轻轻摇动培养皿混匀,置于含5%CO2的37℃培养箱中孵育。3h后更换为4mL 37℃预热的DMEM。培养48h后收取含有慢病毒的细胞培养液,7000r/min 4℃离心15min,得到的上清即为含有慢病毒颗粒的悬液。293T cells (purchased from the Shanghai Chinese Academy of Sciences Cell Bank) were plated into 60 mm cell culture dishes, and the cells were grown to 70-80% for transfection. Cells were exchanged into 1 mL of pre-warmed serum-free medium (DMEM) prior to transfection. First, add 6μg LentiCRISPRv2-HMGB1 expression vector plasmid, 6μg psPAX2 (purchased from addgene, catalog #12260) and 3 μg pMD2.G (purchased from addgene, catalog #12259) helper plasmids into 1 mL of DMEM, and mix well. Then, the 100 μM PEI (polyethyleneimine) stock solution was diluted to 10 μM with HBS (Balanced Salt Solution of HBS) and mixed well. Then, 100 μL of the diluted 10 μM PEI solution was added to the above-mentioned DMEM containing the plasmid, mixed well, and then allowed to stand at room temperature for 5-10 min. Finally, this mixture was added dropwise to the 293T cells to be transfected, the dish was shaken gently to mix well, and then incubated in a 37°C incubator with 5% CO 2 . After 3 h, it was replaced with 4 mL of DMEM pre-warmed at 37°C. After culturing for 48 hours, the cell culture medium containing lentivirus was collected, centrifuged at 7000 r/min at 4°C for 15 minutes, and the obtained supernatant was the suspension containing lentivirus particles.
实施例2 Huh7感染慢病毒颗粒并筛选获得细胞株Example 2 Huh7 infected lentiviral particles and screened to obtain cell lines
1)嘌呤霉素(Puromycin)最优有效浓度的确定1) Determination of the optimal effective concentration of Puromycin
Huh7细胞(购自上海中科院细胞库)按2×105个/mL的浓度接种于12孔板中,培养24h后,嘌呤霉素以浓度分别为0、0.3、0.6、0.9、1.2、1.5、1.8、2.1μg/mL的新鲜无抗无血清培养基溶液替换各孔中的旧培养基。每日观察细胞活力,根据细胞活力,每隔两天更换含嘌呤霉素的新鲜无抗无血清培养基溶液一次。选择能在3~5天内杀死所有细胞的浓度即为最优有效浓度。本次实验在Huh7细胞上测得的最优有效浓度为1.5μg/mL。Huh7 cells (purchased from the Shanghai Chinese Academy of Sciences Cell Bank) were seeded in 12-well plates at a concentration of 2×10 5 cells/mL. After culturing for 24 hours, puromycin was treated at concentrations of 0, 0.3, 0.6, 0.9, 1.2, 1.5, 1.8, 2.1 μg/mL fresh anti-serum-free medium solution replaces the old medium in each well. The cell viability was observed daily, and the fresh antiserum-free medium solution containing puromycin was replaced every two days according to the cell viability. The optimal effective concentration is the concentration that can kill all cells within 3 to 5 days. The optimal effective concentration measured on Huh7 cells in this experiment was 1.5 μg/mL.
2)慢病毒颗粒感染Huh7筛选细胞株2) Lentiviral particle infection of Huh7 screening cell line
将实施例1所收慢病毒颗粒接种Huh7细胞,培养24h后,加入最优有效浓度的嘌呤霉素1.5μg/mL,继续培养至细胞长满后传代。利用嘌呤霉素继续筛选传代细胞,2天更换一次培养液,筛选3~5代。The lentiviral particles collected in Example 1 were inoculated into Huh7 cells, and after culturing for 24 hours, the optimal effective concentration of puromycin 1.5 μg/mL was added, and the cells were further cultured until the cells became confluent and then passaged. Use puromycin to continue to screen the passaged cells, change the culture medium every 2 days, and screen for 3 to 5 generations.
实施例3 HMGB1基因敲除的细胞株鉴定Example 3 Identification of HMGB1 gene knockout cell lines
1)基因组DNA测序鉴定:1) Identification of genomic DNA sequencing:
按照E.Z.N.A Tissue DNA Kit试剂盒说明书,抽提细胞株基因组DNA。在gRNA所靶标的基因序列区域上下游各200~300bp处设计引物,PCR扩增该片段,将其克隆至pMDTM19-TVector(Takara),挑选阳性质粒送英潍捷基(上海)贸易有限公司进行测序。The genomic DNA of the cell line was extracted according to the instructions of the EZNA Tissue DNA Kit. Primers were designed at 200-300 bp upstream and downstream of the gene sequence region targeted by the gRNA, the fragment was amplified by PCR, cloned into pMD TM 19-TVector (Takara), and the positive plasmid was selected and sent to Yingweijieji (Shanghai) Trading Co., Ltd. The company conducts sequencing.
序列比对结果表明目标靶位点因插入或缺失碱基而发生了移码突变(图3)。记为细胞株1、细胞株2、细胞株3;其中,细胞株1是在野生型HMGB1基因的靶向敲除位点上有5个碱基缺失;细胞株2是在野生型HMGB1基因的靶向敲除位点上插入1个碱基;细胞株3是在野生型HMGB1基因的靶向敲除位点上有6个碱基缺失。The sequence alignment results showed that the target site had frameshift mutations due to insertion or deletion of bases (Figure 3). Denoted as cell line 1, cell line 2, and cell line 3; among them, cell line 1 has a 5-base deletion in the targeted knockout site of the wild-type HMGB1 gene; cell line 2 is in the wild-type HMGB1 gene. One base was inserted into the targeted knockout site; cell line 3 had a six-base deletion in the targeted knockout site of the wild-type HMGB1 gene.
HMGB1基因的具体敲除位点如下,以下序列依次对应:野生型、细胞株1、细胞株2、细胞株3:The specific knockout sites of the HMGB1 gene are as follows, and the following sequences correspond in sequence: wild type, cell line 1, cell line 2, and cell line 3:
TGCTCTGAGTATCGCCCAAAAATCAAAGGAGA;TGCTCT GAGTATCGCCCAAAAATCAAAGGAGA ;
TGCTCTGAGTATCGCCCAAAAA-----GGAGA;TGCTCT GAGTATCGCCCAAAAA----- GGAGA;
TGCTCTGAGTATCGCCCAAAAATTCAAAGGAGA;TGCTCT GAGTATCGCCCAAAAATTCAA AGGAGA;
TGCTCTGAGTATCGCCCAAAAA-------GAGA。TGCTCT GAGTATCGCCCAAAAA------- GAGA.
2)Western Blot(WB)验证基因蛋白敲除效果:2) Western Blot (WB) to verify gene protein knockout effect:
①蛋白胶配制:将玻璃板洗净、晾干后放入夹中卡紧,垂直卡在架子上准备灌胶。按表1的比例配制10%或15%分离胶,加入TEMED(四甲基乙二胺)后立即摇匀和灌胶,待胶面达到绿带中间线高度即可;胶上加入异丙醇液封。分离胶充分凝固后,倒去胶上层异丙醇,并用滤纸吸干。按表2配制5%的浓缩胶,加入TEMED后立即摇匀和灌胶;剩余空间灌满浓缩胶后,将梳子插入浓缩胶中,待到浓缩胶凝固后,轻轻将其拔出梳子。密封保存于4℃冰箱。①Protein glue preparation: After washing and drying the glass plate, put it in the clip and clamp it, and then clamp it vertically on the shelf to prepare for glue filling. Prepare 10% or 15% separating gel according to the ratio in Table 1, add TEMED (tetramethylethylenediamine), shake well and pour the gel immediately, until the surface of the glue reaches the height of the middle line of the green belt; add isopropyl alcohol to the glue Liquid seal. After the separating gel is fully solidified, the isopropanol layer on the gel is poured off and blotted dry with filter paper. Prepare 5% stacking gel according to Table 2, add TEMED, shake well and pour the gel immediately; after the remaining space is filled with stacking gel, insert the comb into the stacking gel, and when the stacking gel solidifies, gently pull out the comb. Store in an airtight refrigerator at 4°C.
表1分离胶配方Table 1 formula of separating gel
表2浓缩胶配方Table 2 Stacking Gum Formulation
②上样和电泳:蛋白胶卡紧放入电泳槽后,往电泳槽加入1×SDS-PAGE电泳缓冲液,在蛋白胶的上样孔中按顺序加入5μL Protein Ladder和20μL蛋白样品。正确连接装置,80V电泳30min,120V电泳60min。至溴酚蓝刚好跑出蛋白胶即可停止电泳,进行转膜。②Sampling and electrophoresis: After the protein gel is clamped into the electrophoresis tank, add 1×SDS-PAGE electrophoresis buffer to the electrophoresis tank, and add 5μL Protein Ladder and 20μL protein sample in sequence to the sample hole of the protein gel. Connect the device correctly, electrophoresis at 80V for 30min, and electrophoresis at 120V for 60min. When the bromophenol blue just ran out of the protein gel, the electrophoresis was stopped and the membrane was transferred.
③转膜:按蛋白胶的大小剪好NC膜和滤纸,放入转膜液中浸泡平衡10min。按三层滤纸、蛋白胶、NC膜、三层滤纸的顺序放置于转移夹内侧面,将转移夹扣紧按正确方向放入转膜仪中,即蛋白胶位于负极,NC膜位于正极。转膜仪置于冰上,在200mA恒定电流下转膜55min。③ Transfer membrane: Cut the NC membrane and filter paper according to the size of the protein glue, put them in the membrane transfer solution and soak for 10 minutes. Place the three layers of filter paper, protein glue, NC membrane, and three layers of filter paper on the inner side of the transfer clip in the order. Fasten the transfer clip and put it into the film transfer machine in the correct direction, that is, the protein glue is located at the negative electrode, and the NC membrane is located at the positive electrode. The membrane transfer instrument was placed on ice, and the membrane was transferred under a constant current of 200 mA for 55 min.
④免疫印迹:转膜完成后,取出NC膜,用TBST缓冲液洗涤NC膜,加入含5%脱脂奶粉的封闭液室温封闭2h或4℃封闭过夜。弃去封闭液,TBST缓冲液洗涤NC膜三遍,每遍10min,加入以稀释的一抗(HMGB1兔多克隆抗体购自Abcam,货号ab18256;β-Actin兔多克隆抗体购自全式金公司,货号HC201-01),室温孵育2h或4℃孵育过夜。回收一抗,TBST缓冲液洗涤NC膜三遍,每遍10min,加入1:10000稀释的山羊抗鼠的荧光二抗(800CWGOAT Anti-RABBIT IgG(H+L)购自LICOR化学免疫试剂公司),室温孵育1h。回收二抗,TBST缓冲液洗涤NC膜三遍,每遍10min。使用Odyssey双色红外激光成像系统扫描NC膜成像。④Immunoblotting: After transfer, remove the NC membrane, wash the NC membrane with TBST buffer, and add blocking solution containing 5% nonfat milk powder to block for 2 hours at room temperature or overnight at 4°C. The blocking solution was discarded, and the NC membrane was washed three times with TBST buffer for 10 min each time, and the diluted primary antibody (HMGB1 rabbit polyclonal antibody was purchased from Abcam, product number ab18256; β-Actin rabbit polyclonal antibody was purchased from Quanzhou Gold Co., Ltd. , Cat. No. HC201-01), incubated for 2h at room temperature or overnight at 4°C. The primary antibody was recovered, the NC membrane was washed three times with TBST buffer for 10 min each time, and a 1:10000 diluted goat anti-mouse fluorescent secondary antibody ( 800CWGOAT Anti-RABBIT IgG (H+L) was purchased from LICOR Chemical Immunoreagent Company) and incubated at room temperature for 1 h. The secondary antibody was recovered, and the NC membrane was washed three times with TBST buffer for 10 min each time. The NC films were scanned using the Odyssey two-color infrared laser imaging system.
用碧云天的裂解液裂解细胞,收集细胞株的细胞裂解液,检测结果显示HMGB1蛋白的表达已被完全敲除(图4)。其中,图4中的KO-HMGB1表示HMGB1基因敲除细胞株。The cells were lysed with Biyuntian's lysate, and the cell lysate of the cell line was collected. The detection results showed that the expression of HMGB1 protein had been completely knocked out (Fig. 4). Among them, KO-HMGB1 in Fig. 4 represents a HMGB1 knockout cell line.
实施例4 HMGB1基因敲除细胞株的细胞形态观察Example 4 Observation of cell morphology of HMGB1 gene knockout cell line
HMGB1基因敲除细胞株(KO-HMGB1)与Huh7正常细胞株同时连续传代的过程中,发现二者形态上没有显著的差异(图5)。在连续传代后,检测细胞的HMGB1蛋白的表达以及对该段基因组测序,发现构建的细胞株十分稳定。不难想象,该敲除细胞株具有较大的应用前景。During the continuous passage of the HMGB1 gene knockout cell line (KO-HMGB1) and the Huh7 normal cell line at the same time, there was no significant difference in morphology between the two (Figure 5). After serial passage, the expression of HMGB1 protein in the cells was detected and the genome sequenced, and it was found that the constructed cell line was very stable. It is not difficult to imagine that the knockout cell line has great application prospects.
实施例5 HMGB1基因敲除细胞株在乙脑上的功能验证Example 5 Functional verification of HMGB1 gene knockout cell line on JE
HMGB1基因敲除细胞株(KO-HMGB1)和Huh7正常细胞株分别接种于12孔板中,24h后,以病毒量为0.1MOI的乙型脑炎病毒SA14毒株(所述的SA14毒株在文献“一株强神经毒力乙脑病毒株的生物学及其分子特征.病毒学报.2010,4(26),265-270”中公开)接种。病毒接种48h后,收集细胞上清,置于-80℃冰箱保存。HMGB1 knockout cell line (KO-HMGB1) and Huh7 normal cell line were inoculated in 12-well plates, respectively. Document "Biology and molecular characteristics of a strong neurovirulent Japanese encephalitis virus strain. Acta Virology. 2010, 4(26), 265-270" published in inoculation). 48h after virus inoculation, the cell supernatant was collected and stored in a -80°C refrigerator.
将病毒上清液接种于70~80%BHK-21(购自上海中科院细胞库)单层细胞的96孔板中,48h后弃去DMEM,PBS缓冲液洗涤两遍,每孔加入50μL预冷甲醇,放置在-20℃固30min;弃去甲醇,PBS缓冲液洗涤三遍,每孔加入50μL一抗(JEV NS1蛋白单抗,定制于艾比玛特生物医药有限公司),37℃孵育1h;弃去一抗,PBS缓冲液洗涤三遍,每孔加入50μL HRP耦连的二抗(羊抗鼠的辣根过氧化物酶AffiniPure Goat Anti-Mouse IgG(H+L),货号115-035-003),37℃孵育30min;弃去二抗,PBS缓冲液洗涤三遍加入50μL AEC显色工作液,37℃避光孵育30min;显色完成后,弃去显示液,PBS缓冲液洗涤两遍。在显微镜下观察细胞染色情况(乙型脑炎病毒不入核),计数并计算TCID50。The virus supernatant was inoculated into a 96-well plate of 70-80% BHK-21 (purchased from the cell bank of Shanghai Chinese Academy of Sciences) monolayer cells. After 48 hours, DMEM was discarded, washed twice with PBS buffer, and 50 μL of pre-cooling was added to each well. Methanol, placed at -20 °C for 30 min; discarded methanol, washed three times with PBS buffer, added 50 μL of primary antibody (JEV NS1 protein monoclonal antibody, custom-made by Abimat Biopharmaceutical Co., Ltd.) to each well, and incubated at 37 °C for 1 h ; Discard the primary antibody, wash three times with PBS buffer, add 50 μL of HRP-coupled secondary antibody (goat anti-mouse horseradish peroxidase AffiniPure Goat Anti-Mouse IgG (H+L) to each well, cat. No. 115-035 -003), incubate at 37 °C for 30 min; discard the secondary antibody, wash with PBS buffer three times, add 50 μL of AEC color development working solution, and incubate at 37 °C for 30 min in the dark; after the color development is completed, discard the display solution and wash with PBS buffer for two times all over. Cell staining was observed under a microscope (Japanese encephalitis virus did not enter the nucleus), and TCID 50 was counted and calculated.
结果显示敲除细胞株中病毒滴度显著上升(图6),说明乙型脑炎病毒能在该细胞株内大量增殖。The results showed that the virus titer in the knockout cell line was significantly increased (Fig. 6), indicating that Japanese encephalitis virus can proliferate in this cell line.
上述实施例为本发明较佳的实施方式,但本发明的实施方式并不受上述实施例的限制,其他的任何未背离本发明的精神实质与原理下所作的改变、修饰、替代、组合、简化,均应为等效的置换方式,都包含在本发明的保护范围之内。The above-mentioned embodiments are preferred embodiments of the present invention, but the embodiments of the present invention are not limited by the above-mentioned embodiments, and any other changes, modifications, substitutions, combinations, The simplification should be equivalent replacement manners, which are all included in the protection scope of the present invention.
序列表sequence listing
<110> 华南农业大学<110> South China Agricultural University
<120> 一种敲除人HMGB1基因的细胞株及其应用<120> A cell line knocking out human HMGB1 gene and its application
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<223> 靶向敲除人HMGB1基因的gRNA序列<223> Targeted knockout gRNA sequence of human HMGB1 gene
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<223> HMGB1基因的编码序列<223> Coding sequence of HMGB1 gene
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atgggcaaag gagatcctaa gaagccgaga ggcaaaatgt catcatatgc attttttgtg 60atgggcaaag gagatcctaa gaagccgaga ggcaaaatgt catcatatgc atttttttgtg 60
caaacttgtc gggaggagca taagaagaag cacccagatg cttcagtcaa cttctcagag 120caaacttgtc gggaggagca taagaagaag cacccagatg cttcagtcaa cttctcagag 120
ttttctaaga agtgctcaga gaggtggaag accatgtctg ctaaagagaa aggaaaattt 180ttttctaaga agtgctcaga gaggtggaag accatgtctg ctaaagagaa aggaaaattt 180
gaagatatgg caaaagcgga caaggcccgt tatgaaagag aaatgaaaac ctatatccct 240gaagatatgg caaaagcgga caaggcccgt tatgaaagag aaatgaaaac ctatatccct 240
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