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CN108795928A - A method of for DNA and RNA in separation and Extraction cell - Google Patents

A method of for DNA and RNA in separation and Extraction cell Download PDF

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CN108795928A
CN108795928A CN201810709793.2A CN201810709793A CN108795928A CN 108795928 A CN108795928 A CN 108795928A CN 201810709793 A CN201810709793 A CN 201810709793A CN 108795928 A CN108795928 A CN 108795928A
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dna
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rna
precipitation
cleaning agent
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江南
李丹
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Suzhou Hu Health Technology Co Ltd
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor

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Abstract

The present invention relates to biotechnologies, in particular to a kind of method for DNA and RNA in separation and Extraction cell.Described includes a) obtaining pyrolysis product using Trizol lytic cell samples release nucleic acid;B) it is centrifuged after contacting the pyrolysis product at least one organic extraction solvent, so that the pyrolysis product is layered to obtain upper layer RNA water phases, the batt layer of middle level DNA and lower layer's organic phase;C) batt layer of the RNA water phases and the DNA precipitated respectively, cleaned;Wherein, when carrying out the precipitation, DNA precipitation reagents used include 1,2-PD.The problem of DNA yields are low when this method can effectively avoid while extract DNA and RNA, purity difference.

Description

A method of for DNA and RNA in separation and Extraction cell
Technical field
The present invention relates to biotechnologies, in particular to a kind of for DNA and RNA in separation and Extraction cell Method.
Background technology
It is related to complicated multi-step from the art methods of the concentration of cell origin material, extracting and developing and purification of nucleic acid Process.When handling some biological samples, or carrying out clinical examination, the sample size obtained is usually very rare, thus is Make full use of sample, it usually needs while extracting DNA and RNA.
In the prior art, the method for extracting DNA and RNA simultaneously from sample is generally Trizol cracking process.Trizol is tried Agent is a kind of RNA extracts reagents of maturation suitable for the quick separating RNA from cell and tissue.Trizol reagents have multicomponent Centrifugation, it is maximum special compared with other methods such as guanidine thiocyanate/phenol method, phenol/SDS methods, guanidine hydrochloride method, guanidine thiocyanate method Point be can detach simultaneously a sample RNA DNA protein.Trizol makes sample homogenization, and cell cracking, dissolving is into the cell Inclusion, while the integrality because RNA can be kept containing RNase inhibitor.After chloroform centrifugation is added, solution is divided into water phase and has Machine phase, RNA is in water phase.Take out the recyclable RNA of water phase isopropanol precipitating;With the recyclable DNA of ethanol precipitation middle layer;With different Propyl alcohol precipitates the recyclable protein of organic phase.
However, effect is but often not satisfactory when Trizol extracts DNA, DNA concentration and purity have larger promotion empty Between.
In view of this, special propose the present invention.
Invention content
The purpose of the present invention is to provide a kind of method for DNA and RNA in separation and Extraction cell, this method is extracted The nucleic acid purity that arrives is more preferable, yield higher, and has better extraction efficiency.
In order to realize that the above-mentioned purpose of the present invention, spy use following technical scheme:
The present invention relates to a kind of methods for DNA and RNA in separation and Extraction cell, including:
A) pyrolysis product is obtained using Trizol lytic cell samples release nucleic acid;
B) it is centrifuged after contacting the pyrolysis product at least one organic extraction solvent, so that the pyrolysis product point Layer obtains upper layer RNA water phases, the batt layer of middle level DNA and lower layer's organic phase;
C) batt layer of the RNA water phases and the DNA precipitated respectively, cleaned;
Wherein, when carrying out the precipitation, DNA precipitation reagents used include 1,2-PD.
Specific implementation mode
The present invention can by subsequently some embodiments of the invention is described and wherein included embodiment it is detailed Thin content and be easier to be appreciated that.
Before being further discussed below the present invention, it should be apparent that the present invention is not limited in the particular embodiment, because It is necessarily various for these embodiments.Also it should be apparent that term as used in this specification is merely to illustrate particular implementation Scheme, rather than as limitation, because the scope of the present invention will be defined only in the appended claims.
The present invention relates to a kind of methods for DNA and RNA in separation and Extraction cell, including:
A) pyrolysis product is obtained using Trizol lytic cell samples release nucleic acid;
B) it is centrifuged after contacting the pyrolysis product at least one organic extraction solvent, so that the pyrolysis product point Layer obtains upper layer RNA water phases, the batt layer of middle level DNA and lower layer's organic phase;
C) batt layer of the RNA water phases and the DNA precipitated respectively, cleaned;
Wherein, when carrying out the precipitation, DNA precipitation reagents used include 1,2-PD.
Preferably, method as described above also includes the second of ethyl alcohol and/or pH=5~5.4 in the DNA precipitation reagents Sour sodium.
Preferably, method as described above, the DNA precipitation reagents are mixed to get by the ingredient of following volumes part:
1~3 part of 1,2- propylene glycol, 6~10 parts of ethyl alcohol, pH=5~5.4 1~1.5 part of 1.5M sodium acetates;
In some embodiments, the DNA precipitation reagents are mixed to get by the ingredient of following volumes part:
1.5~2.5 parts of 1,2- propylene glycol, 7~9 parts of ethyl alcohol, pH=5~5.4 1.1~1.4 parts of 1.5M sodium acetates;
In some embodiments, the DNA precipitation reagents are mixed to get by the ingredient of following volumes part:
2 parts of 1,2- propylene glycol, 8 parts of ethyl alcohol, pH=5~5.4 1.2 parts of 1.5M sodium acetates.
The buffer reagent of the 1.5M sodium acetates of pH=5~5.4 actually sodium acetate-acetic acid.
RNA or DNA is polar molecule, and nucleic acid contains a large amount of phosphate group (PO3-), it can be with polar hydrone Electrostatic interaction, thus it makes it easier to be dissolved in the water.
The precipitation of DNA mostly uses absolute ethyl alcohol or isopropanol in the prior art.Ethyl alcohol and isopropanol all have hydroxyl, can be with Nucleic acid molecules fight for water, this is the reason that it promotes nucleic acid molecules precipitation.The advantages of ethyl alcohol is, and second few to precipitation of salts The easy evaporative removal of alcohol, does not influence later experiment.But it is some larger that the polarity of ethyl alcohol compares isopropanol, required body when for precipitating Product is more.Isopropanol polarity is small, and required volume is small and speed is fast, low suitable for concentration, and the precipitation of the big DNA sample of volume, but Isopropanol easily makes salt (such as NaCl, sucrose) be co-precipitated with DNA.
For disadvantages mentioned above, 1,2-PD is added in the present application selection in precipitation system.
1,2-PD has lower polarity, and it possesses more hydroxyls, is more favorable for DNA and more precipitates, this Invention is mixed using 1,2-PD with the ethyl alcohol of appropriate amount, only to precipitate salt under the premise of ensureing Precipitation Potential more.
Extraction environment slant acidity can be adjusted using sodium acetate, to effective neutralization precipitation environment, control precipitation system is suitable It is carried out under suitable dielectric constant.In addition, the sodium ion of suitable concentration can neutralize the charge neutralized on sugared phosphate backbones, make molecule Hydrophily reduces, therefore solubility in water is lower.
When being extracted due to Trizol, the DNA content of middle layer is minimum, and it is usually very low to often lead to DNA ultimate yields.It uses The precipitation reagent that the present invention improves can greatly improve DNA yields.
Preferably, method as described above, when being precipitated to the batt layer of the DNA with the DNA precipitation reagents, It first mixes well, 15min~30min is stood at 18 DEG C~30 DEG C, it is also an option that 17min, 20min, 23min, 25min Or 28min.
Preferably, method as described above, the volume ratio of the batt layer of the DNA precipitation reagents and the DNA is 0.6~ 0.8:0.8~1.2;It is also an option that 0.7:1.
The present invention increases sedimentation effect using 1,2-PD and sodium acetate, thus lesser amount of DNA precipitations examination can be used Agent, to reduce the introducing of propylene glycol and sodium ion.
Preferably, method as described above, when being cleaned to the DNA after precipitation, it is clear that cleaning agent used is divided into first Lotion and the second cleaning agent;
First cleaning agent is absolute ethyl alcohol;
Second cleaning agent is the ethanol water of 70v/v%~80v/v%, it is also an option that 72v/v%, 74v/ The ethanol water of v%, 75v/v%, 76v/v% or 78v/v%.
Preferably, method as described above, with first cleaning agent or second cleaning agent to the DNA after precipitation into When row cleaning, directly centrifuged after precipitating mixing with upper step.
Preferably, method as described above, it is described when being cleaned to the DNA after precipitation with first cleaning agent Centrifugation carries out at 18 DEG C~30 DEG C;
The condition of centrifugation is 9000rpm~11000rpm, 10min~15min.
The condition of centrifugation can also select 10000rpm, 12min.
Preferably, method as described above, when being cleaned to the DNA after precipitation with second cleaning agent, centrifugation Condition be 11000rpm~13000rpm, 3min~7min;
The condition of centrifugation can also select 12000rpm, 5min.
1,2-PD is not volatile compared to for isopropanol, thus the method that the present invention uses the elution of two steps, exhausted big portion Divide 1,2- propylene glycol that can all be eluted in the process.
Centrifugation carries out at 18 DEG C~30 DEG C when eluting for the first time, can further promote 1,2-PD and remaining phenol It is mixed into absolute ethyl alcohol and is removed.
Preferably, method as described above, the RNA precipitate reagent includes isopropanol.
Preferably, method as described above, the RNA precipitate reagent further include that RNase inhibitor is appropriate.
Preferably, method as described above, the RNase inhibitor are selected from 8-hydroxyquinoline, guanidinium isothiocyanate, vanadyl core It is one kind of multiple in riboside compound, RNasin, SDS, beta -mercaptoethanol.
Preferably, method as described above, when being precipitated to the RNA water phases with the RNA precipitate reagent, fully 10min~20min is stood after mixing at 18 DEG C~30 DEG C, it is also an option that 12min, 14min, 16min or 18min.
Preferably, the volume ratio of method as described above, the RNA precipitate reagent and the RNA water phases is 0.8~1.2: 0.8~1.2;It is also an option that 1:1.
Preferably, method as described above, when being cleaned to the RNA after precipitation, cleaning agent used is 70v/v% The ethanol water of~80v/v%;
In some embodiments, cleaning agent used is 72v/v%, 74v/v%, 75v/v%, 76v/v% or 78v/v% Ethanol water.
Preferably, method as described above, the cleaning are 1~2 time.
Preferably, method as described above when being cleaned to the RNA after precipitation with the cleaning agent, is precipitated with upper step 2 DEG C~6 DEG C incubation 1min~5min, centrifugation after mixing;
The condition of centrifugation is 2 DEG C~6 DEG C, 11000rpm~13000rpm, 3min~7min;
The condition of centrifugation is also an option that 4 DEG C, 12000rpm, 5min.
Preferably, method as described above also contains linear when cracking PBMC samples using Trizol, in cracking system Change acrylamide.
Acrylamide solution is linearized, is a kind of coprecipitator, contributes to the precipitation of nucleic acid purification process amplifying nucleic acid.
Preferably, the condition of method as described above, the cracking is:
Trizol reagents and the cell sample mixing are first used, linearisation acryloyl is added after standing 15min~25min Amine stands 3min~8min after mixing;
The condition of the cracking is also an option that:
Trizol reagents and the cell sample mixing are first used, linearisation acryloyl is added after standing 18min~22min Amine stands 4min~6min after mixing;
Or, first using Trizol reagents and the cell sample mixing, linearisation acrylamide is added after standing 20min, 5min is stood after mixing.
Preferably, method as described above, the organic extraction solvent are selected from chloroform or the bromo- 3- chloropropanes of 1-;More preferably For the bromo- 3- chloropropanes (BCP) of 1-.
BCP low toxicities, boiling point is high, not volatile (BCP, bp:142-145℃;chloroform,bp:60.5-61.5 DEG C), Using upper safer, it need not move in draught cupboard and operate.
Preferably, method as described above, the centrifugation are 10000rpm~14000rpm under conditions of 2 DEG C~6 DEG C Centrifuge 10min~20min;
The centrifugation can also be under conditions of 2 DEG C~6 DEG C, and 11000rpm~13000rpm centrifuges 13min~17min;
The centrifugation can also be under conditions of 4 DEG C, and 12000rpm centrifuges 15min.
Preferably, method as described above, the cell sample are zooblast sample.
Preferably, method as described above, the zooblast sample are mammalian cell sample.
Preferably, method as described above, the mammalian cell sample are primates zooblast sample.
Preferably, method as described above, the primates zooblast sample are the cell sample of people.
This method is particularly suitable for treasuring the separation of cell sample amplifying nucleic acid, such as PBMC samples.
The separation of PBMC can be used that well known to a person skilled in the art method progress.Preferably, method as described above, institute It states PBMC samples and passes through Ficoll-Hypaque density-gradient centrifugation methods, Percoll density-gradient centrifugation methods, Iodixanol ladders It is isolated to spend any one of centrifugal process, hydroxyethyl starch (HES) centrifugal method.
PBMC separation methods are illustrated
(a) whole blood of heparin lithium anti-freezing is numbered, trim, 2000rpm/min centrifuges 10min.Blood plasma is taken out, in -80 It DEG C freezes.Remaining haemocyte adds PBS to l0ml, mixing.
(b) 2 centrifuge tubes are taken, often pipe plus 4m1 lymphocyte separation mediums, it is thin to be added slowly to lymph by above-mentioned mixed whole blood The upper layer of born of the same parents' separating liquid makes the two form a clearly interface.
(c) trim, 2500rpm/min centrifugation 20min after obtain 4 cellular layers, be followed successively by from top to bottom diluted blood plasma, PBMC, granulocyte, red blood cell.
(d) it takes in second layer tunica albuginea layer to centrifuge tube, adds PBS to l0ml, trim, 1500rpm/min centrifuges 10min.
(e) supernatant is abandoned, adds PBS to 10ml to be uniformly mixed, and carry out cell count.
If isolated PBMC need not be used at once, further include:
(f) 1500rpm/min centrifuges 5min, abandons supernatant, and gently bullet dissipates cell mass, by 1:1 plus A, B liquid, mixing, with 5 × 106~1 × 107/ pipe is positioned in freezing storing box rapidly.
(g) freezing storing box is put into -80 DEG C of refrigerators.
(h) next day moves into freeze-stored cell in liquid nitrogen.
Points for attention:
(a) pay attention to whole process sterile working.
(b) pay attention to trim when centrifuging, prevent shakiness from causing cell centrifugal effect bad.
(c) whole blood is noticed that speed is slow toward the lymphocyte separation medium upper layer added-time, forms a clearly liquid levels layer, It prevents from mixing, influences separating effect.
(d) A, B liquid are mixed into frozen stock solution, for freezing for cell.
(e) A liquid is cow's serum;B liquid is the mixing of cow's serum and DMSO, ratio 4:1.
(f) cell not put the long time in freezing storing box, influenced the survival service life of cell, be transplanted in liquid nitrogen container as early as possible It preserves.
Embodiment of the present invention is described in detail below in conjunction with embodiment, but those skilled in the art will Understand, the following example is merely to illustrate the present invention, and is not construed as limiting the scope of the invention.It is not specified in embodiment specific Condition person carries out according to conventional conditions or manufacturer's recommended conditions.Reagents or instruments used without specified manufacturer is It can be with conventional products that are commercially available.
Embodiment 1
A kind of method of extraction Hippocampal Neuron Cells nucleic acid is present embodiments provided, including:
1. taking out Hippocampal Neuron Cells sample, 1mL Trizol reagents are added, under piping and druming 12~16,18 DEG C of standings 30min is added 1 μ L and linearizes acrylamide solution, overturns mixing, 18 DEG C of standing 8min;
2. the BCP reagents of 100 μ L precoolings are added, under firmly rocking 20~30 with hand, wait for that solution is creamy white state, 18 DEG C Stand 18min;
3. 4 DEG C of centrifugations of 10000rpm 20min prepare the EP pipes of corresponding labeled RNA printed words;
4. after centrifugation, solution is divided into three layers in EP pipes, and upper layer is the aqueous phase solution containing RNA, and centre is to contain genome The batt layer of DNA, lower layer are red organic solution layer.
It is careful to take out about 500 μ L upper strata aqueous phase solution, move to the EP pipes of new labeled RNA printed words;
It is careful to take out about 300 μ L middle layer aqueous phase solutions, move to the EP pipes of new marker DNA printed words.
5. being separately added into 1 μ L RNasin and 500 μ L isopropanols in RNA EP pipes, mixing, 18 DEG C of standing 20min are overturned.
4 DEG C of 12000rpm 15min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
RNA precipitate is washed 2 times with 1mL 70v/v% ethyl alcohol, i.e., is first incubated 3min, 4 DEG C of centrifugations of rear 12000rpm 5min.
After RNA precipitate washes, lies low to be positioned on toilet paper and dry (40~60min) afterwards with 30 μ L ddH2O dissolves, and 55 DEG C water-bath 30min, nano drop survey RNA concentration and purity.
6. 210 μ L of DNA precipitation reagents are added in DNA EP pipes, the DNA precipitation reagents are by 1~3 part of 1,2-PD, second 1~1.5 part of preparation of 1.5M sodium acetates of 6~10 parts of alcohol, pH=5~5.4 obtains.
It mixes well, cotton-shaped DNA precipitations visible at this time occur, 18 DEG C of standing 30min;
4 DEG C of 10000rpm 20min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
DNA precipitations are washed once with absolute ethyl alcohol, and at 18 DEG C, 11000rpm centrifuges 10min;
After discarding supernatant, DNA precipitations continue to use the ethanol aqueous wash of 70v/v% primary, and the condition of centrifugation is 11000rpm, 7min, 4 DEG C or room temperature (18 DEG C~30 DEG C).
The EP pipes of DNA, which lie low to be positioned on toilet paper, dries (40~60min) afterwards with 30 μ L TE buffer dissolvings, 55 DEG C Water-bath 30min, nano drop survey RNA concentration and purity.
Embodiment 2
A kind of method of extraction fibroblast nucleic acid is present embodiments provided, including:
1. taking out fibroblast sample, 1mL Trizol reagents are added, under piping and druming 12~16,30 DEG C of standing 15min add Enter 1 μ L linearisation acrylamide solutions, overturns mixing, 30 DEG C of standing 3min;
2. the BCP reagents of 100 μ L precoolings are added, under firmly rocking 20~30 with hand, wait for that solution is creamy white state, 30 DEG C Stand 12min;
3. 4 DEG C of centrifugations of 14000rpm 10min prepare the EP pipes of corresponding labeled RNA printed words;
4. after centrifugation, solution is divided into three layers in EP pipes, and upper layer is the aqueous phase solution containing RNA, and centre is to contain genome The batt layer of DNA, lower layer are red organic solution layer.
It is careful to take out about 500 μ L upper strata aqueous phase solution, move to the EP pipes of new labeled RNA printed words;
It is careful to take out about 300 μ L middle layer aqueous phase solutions, move to the EP pipes of new marker DNA printed words.
5. being separately added into 1 μ L RNasin and 500 μ L isopropanols in RNA EP pipes, mixing, 30 DEG C of standing 12min are overturned.
4 DEG C of 12000rpm 15min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
RNA precipitate is washed 2 times with 1mL 80v/v% ethyl alcohol, i.e., is first incubated 3min, 4 DEG C of centrifugations of rear 12000rpm5min.
After RNA precipitate washes, lies low to be positioned on toilet paper and dry (40~60min) afterwards with 30 μ L ddH2O dissolves, and 55 DEG C water-bath 30min, nano drop survey RNA concentration and purity.
6. 210 μ L of DNA precipitation reagents are added in DNA EP pipes, the DNA precipitation reagents are by 1~3 part of 1,2-PD, second 1~1.5 part of preparation of 1.5M sodium acetates of 6~10 parts of alcohol, pH=5~5.4 obtains.
It mixes well, cotton-shaped DNA precipitations visible at this time occur, 30 DEG C of standing 15min;
4 DEG C of 14000rpm 10min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
DNA precipitations are washed once with absolute ethyl alcohol, and at 30 DEG C, 9000rpm centrifuges 15min;
After discarding supernatant, DNA precipitations continue to use the ethanol aqueous wash of 80v/v% primary, and the condition of centrifugation is 13000rpm, 3min, 4 DEG C or room temperature (18 DEG C~30 DEG C).
The EP pipes of DNA, which lie low to be positioned on toilet paper, dries (40~60min) afterwards with 30 μ L TE buffer dissolvings, 55 DEG C Water-bath 30min, nano drop survey RNA concentration and purity.
Embodiment 3
A kind of method of extraction PBMC nucleic acid is present embodiments provided, including:
1. taking out PBMC samples, 1mL Trizol reagents are added, under piping and druming 12~16,1 μ L are added in 20 DEG C of standing 25min Acrylamide solution is linearized, mixing, 20 DEG C of standing 4min are overturned;
2. the BCP reagents of 100 μ L precoolings are added, under firmly rocking 20~30 with hand, wait for that solution is creamy white state, 20 DEG C Stand 4min;
3. 4 DEG C of centrifugations of 13000rpm 12min prepare the EP pipes of corresponding labeled RNA printed words;
4. after centrifugation, solution is divided into three layers in EP pipes, and upper layer is the aqueous phase solution containing RNA, and centre is to contain genome The batt layer of DNA, lower layer are red organic solution layer.
It is careful to take out about 500 μ L upper strata aqueous phase solution, move to the EP pipes of new labeled RNA printed words;
It is careful to take out about 300 μ L middle layer aqueous phase solutions, move to the EP pipes of new marker DNA printed words.
5. being separately added into 1 μ L RNasin and 500 μ L isopropanols in RNA EP pipes, mixing, 20 DEG C of standing 15min are overturned.
4 DEG C of 12000rpm 15min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
RNA precipitate is washed 2 times with 1mL 73v/v% ethyl alcohol, i.e., is first incubated 3min, 4 DEG C of centrifugations of rear 12000rpm5min.
After RNA precipitate washes, lies low to be positioned on toilet paper and dry (40~60min) afterwards with 30 μ L ddH2O dissolves, and 55 DEG C water-bath 30min, nano drop survey RNA concentration and purity.
6. 210 μ L of DNA precipitation reagents are added in DNA EP pipes, the DNA precipitation reagents are by 2.5 parts of 1,2-PD, second 1 part of preparation of 1.5M sodium acetates of 9 parts of alcohol, pH=5~5.4 obtains.
It mixes well, cotton-shaped DNA precipitations visible at this time occur, 20 DEG C of standing 12min;
4 DEG C of 12000rpm 12min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
DNA precipitations are washed once with absolute ethyl alcohol, and at 18 DEG C~30 DEG C, 9000rpm centrifuges 15min;
After discarding supernatant, DNA precipitations continue to use the ethanol aqueous wash of 77v/v% primary, and the condition of centrifugation is 12000rpm, 6min, 4 DEG C or room temperature (20 DEG C).
The EP pipes of DNA, which lie low to be positioned on toilet paper, dries (40~60min) afterwards with 30 μ L TE buffer dissolvings, 55 DEG C Water-bath 30min, nano drop survey RNA concentration and purity.
Embodiment 4
A kind of method of extraction PBMC nucleic acid is present embodiments provided, including:
1. taking out PBMC samples, 1mL Trizol reagents are added, under piping and druming 12~16,1 μ L are added in 25 DEG C of standing 25min Acrylamide solution is linearized, mixing, 25 DEG C of standing 5min are overturned;
2. the BCP reagents of 100 μ L precoolings are added, under firmly rocking 20~30 with hand, wait for that solution is creamy white state, 25 DEG C Stand 15min;
3. 4 DEG C of centrifugations of 12000rpm 15min prepare the EP pipes of corresponding labeled RNA printed words;
4. after centrifugation, solution is divided into three layers in EP pipes, and upper layer is the aqueous phase solution containing RNA, and centre is to contain genome The batt layer of DNA, lower layer are red organic solution layer.
It is careful to take out about 500 μ L upper strata aqueous phase solution, move to the EP pipes of new labeled RNA printed words;
It is careful to take out about 300 μ L middle layer aqueous phase solutions, move to the EP pipes of new marker DNA printed words.
5. being separately added into 1 μ L RNasin and 500 μ L isopropanols in RNA EP pipes, mixing, 25 DEG C of standing 15min are overturned.
4 DEG C of 12000rpm 15min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
RNA precipitate is washed 2 times with 1mL 75v/v% ethyl alcohol, i.e., is first incubated 3min, 4 DEG C of centrifugations of rear 12000rpm 5min.
After RNA precipitate washes, lies low to be positioned on toilet paper and dry (40~60min) afterwards with 30 μ L ddH2O dissolves, and 55 DEG C water-bath 30min, nano drop survey RNA concentration and purity.
6. 210 μ L of DNA precipitation reagents are added in DNA EP pipes, the DNA precipitation reagents are by 2 parts of 1,2-PD, ethyl alcohol 8 1.25 parts of preparations of 1.5M sodium acetates of part, pH=5~5.4 obtain.
It mixes well, cotton-shaped DNA precipitations visible at this time occur, 25 DEG C of standing 25min;
4 DEG C of 12000rpm 15min are centrifuged, at this time visible EP bottom of the tube white precipitate.It is careful that supernatant is sucked out, it discards.
DNA precipitations are washed once with absolute ethyl alcohol, and at 25 DEG C, 10000rpm centrifuges 12min;
After discarding supernatant, DNA precipitations continue to use the ethanol aqueous wash of 75v/v% primary, and the condition of centrifugation is 12000rpm, 5min, 4 DEG C or 25 DEG C.
The EP pipes of DNA, which lie low to be positioned on toilet paper, dries (40~60min) afterwards with 30 μ L TE buffer dissolvings, 55 DEG C Water-bath 30min, Nano drop survey RNA concentration and purity.
Experimental example 1
DNA and RNA is carried out using the embodiment of the present invention 4 to 10 PBMC samples to extract, using Thermo companies NanoDrop spectrophotometers distinguish the 10 PBMC cell DNAs and RNA concentration (ng/ μ L), purity (OD260/ of Detection and Extraction OD280) and the degree that desalts (OD260/OD230) the results are shown in table below:
1 DNA testing results of table:(pure dna:OD260/OD280 ≈ 1.8, OD260/OD230 > 2.0)
2 RNA testing results of table:(pure rna:OD260/OD280 ≈ 2.0, OD260/OD230 > 2.0)
Experimental example 2
Comparative example is set on the basis of embodiment 4, and only extracts DNA, to evaluate DNA extraction effects.
1,2-PD in the DNA precipitation reagents is replaced with isometric 1,3-PD by comparative example 1;
1,2-PD in the DNA precipitation reagents is replaced with isometric ethyl alcohol by comparative example 2;
Sodium acetate in the DNA precipitation reagents is replaced with isometric ethyl alcohol by comparative example 3;
The DNA precipitation reagents are replaced with absolute ethyl alcohol by comparative example 4.
The DNA precipitation reagents are replaced with isopropanol by comparative example 5.
When experiment, first multigroup water in intermediate layer is mixed, then is packed as five parts, is precipitated respectively with five groups of DNA precipitation reagents, To ensure that the consistency of experiment, experiment do 6 repetitions, compare average value.
Influence of the table 3 using different DNA precipitation reagents to DNA testing results
* p < 0.05, vs embodiment 4;* p < 0.01, vs embodiments 4.
Compared with Example 4, DNA concentration is declined comparative example 1, and OD260/OD280, OD260/OD230 do not conform to Lattice.Although 1,3-PD compared with 1,2-PD, contains, there are two hydroxyls, and more symmetrical from the point of view of its molecular formula, pole Property may smaller, but because it can form intramolecular hydrogen bond, two terminal hydroxy groups are easy to constitute six-membered ring structure, and possible reagent is striven The ability for taking water by force is weaker, and DNA yields is caused to decline;Also it is not easy to be removed by ethyl alcohol after cyclization.
Compared with Example 4, DNA concentration is declined comparative example 2.Show that suitable 1,2- propylene glycol, which is added, effectively to be carried High DNA yield.
Compared with Example 4, DNA concentration is declined comparative example 3.Show that suitable sodium acetate, which is added, to be effectively improved DNA yields.
Compared with Example 4, DNA concentration declines to a great extent comparative example 4.Show that compound system of the present invention can be effective Promote DNA yields.
Compared with Example 4, DNA concentration declines to a great extent comparative example 5, and OD260/OD280, OD260/OD230 do not conform to Lattice.Show being not thorough for the removal of the phenol in system, either participates in many oil-soluble impurities or small molecule salt.Since PBMC comes Derived from tissue samples, when extraction, may carry the substances such as some plasma compositions, under isopropanol may precipitate these impurity together It splits.If the general this fields l Trizol+ isopropyl alcohol extractings, when subsequent wash, uses 0.1M sodium citrates, 10% ethyl alcohol to wash Effect is better.
Finally it should be noted that:The above embodiments are only used to illustrate the technical solution of the present invention., rather than its limitations;To the greatest extent Present invention has been described in detail with reference to the aforementioned embodiments for pipe, but it will be understood by those of ordinary skill in the art that:Its It still can be with technical scheme described in the above embodiments is modified, either to which part or all technical features Carry out equivalent replacement;And these modifications or replacements, various embodiments of the present invention skill that it does not separate the essence of the corresponding technical solution The range of art scheme.

Claims (1)

1. a kind of method for DNA and RNA in separation and Extraction cell, which is characterized in that including:
A) pyrolysis product is obtained using Trizol lytic cell samples release nucleic acid;
B) it is centrifuged after contacting the pyrolysis product at least one organic extraction solvent, so that the pyrolysis product is layered To upper layer RNA water phases, the batt layer of middle level DNA and lower layer's organic phase;
C) batt layer of the RNA water phases and the DNA precipitated respectively, cleaned;
Wherein, when carrying out the precipitation, DNA precipitation reagents used include 1,2-PD;
Optionally, also include ethyl alcohol and/or the sodium acetate of pH=5~5.4 in the DNA precipitation reagents;
Optionally, the DNA precipitation reagents are mixed to get by the ingredient of following volumes part:
1~3 part of 1,2- propylene glycol, 6~10 parts of ethyl alcohol, pH=5~5.4 1~1.5 part of 1.5M sodium acetates;
Optionally, it when being precipitated to the batt layer of the DNA with the DNA precipitation reagents, first mixes well, then at 18 DEG C 15min~30min is stood at~30 DEG C;
Optionally, the volume ratio of the DNA precipitation reagents and the batt layer of the DNA is 0.6~0.8:0.8~1.2;
Optionally, when being cleaned to the DNA after precipitation, cleaning agent used is divided into the first cleaning agent and the second cleaning agent;
First cleaning agent is absolute ethyl alcohol;
Second cleaning agent is the ethanol water of 70v/v%~80v/v%;
Optionally, it when being cleaned to the DNA after precipitation with first cleaning agent or second cleaning agent, is precipitated with upper step It is directly centrifuged after mixing;
Optionally, when being cleaned to the DNA after precipitation with first cleaning agent, it is described centrifugation at 18 DEG C~30 DEG C into Row;
The condition of centrifugation is 9000rpm~11000rpm, 10min~15min;
Optionally, when being cleaned to the DNA after precipitation with second cleaning agent, the condition of centrifugation be 11000rpm~ 13000rpm, 3min~7min;
Optionally, the RNA precipitate reagent includes isopropanol;
Optionally, the RNA precipitate reagent further includes that RNase inhibitor is appropriate;
Optionally, the RNase inhibitor be selected from 8-hydroxyquinoline, guanidinium isothiocyanate, vanadyl-ribonucleoside complex, It is one or more in RNasin, SDS, beta -mercaptoethanol;
Optionally, when being precipitated to the RNA water phases with the RNA precipitate reagent, at 18 DEG C~30 DEG C after mixing well Lower standing 10min~20min;
Optionally, the volume ratio of the RNA precipitate reagent and the RNA water phases is 0.8~1.2:0.8~1.2;
Optionally, when being cleaned to the RNA after precipitation, cleaning agent used is that the ethyl alcohol of 70v/v%~80v/v% is water-soluble Liquid;
Optionally, when being cleaned to the RNA after precipitation with the cleaning agent, with 2 DEG C~6 DEG C incubations after upper step precipitation mixing 1min~5min, centrifugation;
The condition of centrifugation is 2 DEG C~6 DEG C, 11000rpm~13000rpm, 3min~7min;
Optionally, when cracking PBMC samples using Trizol, linearisation acrylamide is also contained in cracking system;
Optionally, the condition of the cracking is:
Trizol reagents and the cell sample mixing are first used, linearisation acrylamide is added after standing 15min~25min, 3min~8min is stood after mixing;
Optionally, the organic extraction solvent is selected from chloroform or the bromo- 3- chloropropanes of 1-;
Optionally, in step a), the centrifugation is under conditions of 2 DEG C~6 DEG C, 10000rpm~14000rpm centrifuges 10min~20min;
Optionally, the cell sample is zooblast sample;
Optionally, the zooblast sample is mammalian cell sample;
Optionally, the mammalian cell sample is primates zooblast sample;
Optionally, the primates zooblast sample is the cell sample of people;
Optionally, the cell sample of the people is PBMC samples;
Optionally, the PBMC samples pass through Ficoll-Hypaque density-gradient centrifugation methods, Percoll density gradient centrifugations Any one of method, Iodixanol gradient centrifugations, hydroxyethyl starch (HES) centrifugal method is isolated.
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CN110951724A (en) * 2019-12-20 2020-04-03 沈阳农业大学 Method for rapidly extracting nucleic acid DNA and/or RNA by Trizol
CN112501158A (en) * 2020-12-04 2021-03-16 麦凯(上海)生物科技有限公司 Human liquid sample whole nucleic acid extraction kit and application thereof
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CN119265282A (en) * 2024-11-26 2025-01-07 上海体育大学 Dried blood spot pretreatment method and RNA extraction method

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CN109609496A (en) * 2019-01-16 2019-04-12 浙江工商大学 A method for extracting total DNA of livestock and poultry manure for PCR amplification
CN110951724A (en) * 2019-12-20 2020-04-03 沈阳农业大学 Method for rapidly extracting nucleic acid DNA and/or RNA by Trizol
CN112501158A (en) * 2020-12-04 2021-03-16 麦凯(上海)生物科技有限公司 Human liquid sample whole nucleic acid extraction kit and application thereof
CN112746055A (en) * 2020-12-30 2021-05-04 华南农业大学 Optimization process for milk somatic cell separation process
CN112662739A (en) * 2021-01-04 2021-04-16 深圳海普洛斯医学检验实验室 Urine exosome RNA extraction and library construction method for NGS platform
CN117625740A (en) * 2023-11-01 2024-03-01 嘉应学院 A method to rapidly extract DNA from Trizol samples suitable for high-throughput sequencing
CN117625740B (en) * 2023-11-01 2024-07-19 嘉应学院 A method for rapidly extracting DNA suitable for high-throughput sequencing from Trizol samples
CN119265282A (en) * 2024-11-26 2025-01-07 上海体育大学 Dried blood spot pretreatment method and RNA extraction method

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Application publication date: 20181113