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CN109890839B - T cell receptors that recognize SAGE1 antigenic short peptides - Google Patents

T cell receptors that recognize SAGE1 antigenic short peptides Download PDF

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CN109890839B
CN109890839B CN201780066440.9A CN201780066440A CN109890839B CN 109890839 B CN109890839 B CN 109890839B CN 201780066440 A CN201780066440 A CN 201780066440A CN 109890839 B CN109890839 B CN 109890839B
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李懿
陈安安
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Abstract

Provided is a T Cell Receptor (TCR) capable of specifically binding the short peptide VFSTVPPAFI derived from SAGE1 antigen, a nucleic acid molecule encoding the TCR, a vector comprising the nucleic acid molecule, and a cell transducing the TCR. The antigen short peptide VFSTVPPAFI can form a complex with HLA A2402 and is presented on the surface of a cell together.

Description

识别SAGE1抗原短肽的T细胞受体T cell receptors that recognize SAGE1 antigenic short peptides

技术领域technical field

本发明涉及能够识别源自SAGE1抗原短肽的TCR,本发明还涉及转导上述TCR来获得的SAGE1特异性的T细胞,及他们在预防和治疗SAGE1相关疾病中的用途。The present invention relates to TCRs capable of recognizing short peptides derived from SAGE1 antigen, the present invention also relates to SAGE1-specific T cells obtained by transducing the above-mentioned TCRs, and their use in preventing and treating SAGE1-related diseases.

背景技术Background technique

SAGE1作为一种内源性肿瘤抗原,在细胞内生成后被降解成小分子多肽,并与MHC(主组织相容性复合体)分子结合形成复合物,被呈递到细胞表面。研究显示,VFSTVPPAFI是衍生自SAGE1的短肽。SAGE1抗原在黑色素瘤、膀胱癌、肝癌、表皮样癌、非小细胞肺癌和鳞状细胞癌等肿瘤组织中均有表达,而在除睾丸外的多数正常组织中不表达(Martelange V1,De Smet C,De Plaen E,Lurquin C,Boon T.Cancer Res.2000;60(14):3848-55;Atanackovic D,etal.,Cancer BiolTher.2006;5(9):1218-25)。对于上述疾病的治疗,可以采用化疗和放射性治疗等方法,但都会对自身的正常细胞造成损害。As an endogenous tumor antigen, SAGE1 is degraded into small molecule polypeptides after being generated in cells, and combined with MHC (major histocompatibility complex) molecules to form complexes, which are presented to the cell surface. Studies have shown that VFSTVPPAFI is a short peptide derived from SAGE1. SAGE1 antigen is expressed in tumor tissues such as melanoma, bladder cancer, liver cancer, epidermoid carcinoma, non-small cell lung cancer and squamous cell carcinoma, but not in most normal tissues except testis (Martelange V1, De Smet C, De Plaen E, Lurquin C, Boon T. Cancer Res. 2000; 60(14): 3848-55; Atanackovic D, et al., Cancer Biol Ther. 2006; 5(9): 1218-25). For the treatment of the above diseases, chemotherapy and radiation therapy can be used, but they will cause damage to their own normal cells.

T细胞过继免疫治疗是将对靶细胞抗原具有特异性的反应性T细胞转入病人体内,使其针对靶细胞发挥作用。T细胞受体(TCR)是T细胞表面的一种膜蛋白,其能够识别相应的靶细胞表面的抗原短肽。在免疫系统中,通过抗原短肽特异性的TCR与短肽-主组织相容性复合体(pMHC复合物)的结合引发T细胞与抗原呈递细胞(APC)直接的物理接触,然后T细胞及APC两者的其他细胞膜表面分子就发生相互作用,引起一系列后续的细胞信号传递和其他生理反应,从而使得不同抗原特异性的T细胞对其靶细胞发挥免疫效应。因此,本领域技术人员致力于分离出对SAGE1抗原短肽具有特异性的TCR,使其发挥作用,或者将该TCR转导T细胞来获得对SAGE1抗原短肽具有特异性的T细胞,从而使他们在细胞免疫治疗中发挥作用。T cell adoptive immunotherapy is the transfer of T cells specific for target cell antigens into the patient's body, so that they can play a role against the target cells. T cell receptor (TCR) is a membrane protein on the surface of T cells that can recognize short antigenic peptides on the surface of the corresponding target cells. In the immune system, direct physical contact between T cells and antigen presenting cells (APCs) is triggered by the binding of antigen peptide-specific TCRs to the peptide-major histocompatibility complex (pMHC complex), and then T cells and The other cell membrane surface molecules of the two APCs interact, causing a series of subsequent cell signaling and other physiological responses, so that T cells with different antigen specificities can exert immune effects on their target cells. Therefore, those skilled in the art are devoted to isolating TCRs specific for SAGE1 antigen short peptides, making them work, or transducing the TCRs into T cells to obtain T cells specific for SAGE1 antigen short peptides, so that the They play a role in cellular immunotherapy.

发明内容SUMMARY OF THE INVENTION

本发明的目的在于提供一种识别SAGE1抗原短肽的T细胞受体。The object of the present invention is to provide a T cell receptor that recognizes the SAGE1 antigenic short peptide.

本发明的第一方面,提供了一种T细胞受体(TCR),所述TCR能够与VFSTVPPAFI-HLAA2402复合物结合。The first aspect of the present invention provides a T cell receptor (TCR), the TCR can bind to the VFSTVPPAFI-HLAA2402 complex.

在另一优选例中,所述TCR包含TCRα链可变域和TCR链可变域,所述TCRα链可变域的CDR3的氨基酸序列为CAVLYTGANSKLTF(SEQ ID NO.12);和/或所述TCR链可变域的CDR3的氨基酸序列为CASSLVGKQPQHF(SEQ ID NO.15)。In another preferred embodiment, the TCR comprises a TCRα chain variable domain and a TCR chain variable domain, and the amino acid sequence of CDR3 of the TCRα chain variable domain is CAVLYTGANSKLTF (SEQ ID NO. 12); and/or the The amino acid sequence of CDR3 of the variable domain of the TCR chain is CASSLVGKQPQHF (SEQ ID NO. 15).

在另一优选例中,所述TCRα链可变域的3个互补决定区(CDR)为:In another preferred embodiment, the three complementarity determining regions (CDRs) of the variable domain of the TCRα chain are:

αCDR1-DSAIYN(SEQ ID NO.10)αCDR1-DSAIYN (SEQ ID NO. 10)

αCDR2-IQSSQRE(SEQ ID NO.11)αCDR2-IQSSQRE (SEQ ID NO. 11)

αCDR3-CAVLYTGANSKLTF(SEQ ID NO.12);和/或αCDR3-CAVLYTGANSKLTF (SEQ ID NO. 12); and/or

所述TCR链可变域的3个互补决定区为:The three complementarity determining regions of the variable domain of the TCR chain are:

CDR1-SGHDT(SEQ ID NO.13)CDR1-SGHDT (SEQ ID NO. 13)

CDR2-YYEEEE(SEQ ID NO.14)CDR2-YYEEEE (SEQ ID NO. 14)

CDR3-CASSLVGKQPQHF(SEQ ID NO.15)。CDR3-CASSLVGKQPQHF (SEQ ID NO. 15).

在另一优选例中,所述TCR包含TCRα链可变域和TCR链可变域,所述TCRα链可变域为与SEQ ID NO.1具有至少90%序列相同性的氨基酸序列;和/或所述TCR链可变域为与SEQID NO:5具有至少90%序列相同性的氨基酸序列。In another preferred embodiment, the TCR comprises a TCRα chain variable domain and a TCR chain variable domain, and the TCRα chain variable domain is an amino acid sequence having at least 90% sequence identity with SEQ ID NO. 1; and/ Or the TCR chain variable domain is an amino acid sequence with at least 90% sequence identity to SEQ ID NO:5.

在另一优选例中,所述TCR包含α链可变域氨基酸序列SEQ ID NO.1。In another preferred embodiment, the TCR comprises the α chain variable domain amino acid sequence SEQ ID NO.1.

在另一优选例中,所述TCR包含β链可变域氨基酸序列SEQ ID NO.5。In another preferred embodiment, the TCR comprises a beta chain variable domain amino acid sequence of SEQ ID NO.5.

在另一优选例中,所述TCR为αβ异质二聚体,其包含TCRα链恒定区TRAC*01和TCRβ链恒定区TRBC1*01或TRBC2*01。In another preferred embodiment, the TCR is an αβ heterodimer, which comprises a TCRα chain constant region TRAC*01 and a TCRβ chain constant region TRBC1*01 or TRBC2*01.

在另一优选例中,所述TCR的α链氨基酸序列为SEQ ID NO:3和/或所述TCR的β链氨基酸序列为SEQ ID NO.7。In another preferred embodiment, the amino acid sequence of the α chain of the TCR is SEQ ID NO: 3 and/or the amino acid sequence of the β chain of the TCR is SEQ ID NO.7.

在另一优选例中,所述TCR是可溶的。In another preferred embodiment, the TCR is soluble.

在另一优选例中,所述TCR为单链。In another preferred embodiment, the TCR is a single chain.

在另一优选例中,所述TCR是由α链可变域与β链可变域通过肽连接序列连接而成。In another preferred embodiment, the TCR is formed by linking the α chain variable domain and the β chain variable domain through a peptide linker sequence.

在另一优选例中,所述TCR在α链可变区氨基酸第11、13、19、21、53、76、89、91、或第94位,和/或α链J基因短肽氨基酸倒数第3位、倒数第5位或倒数第7位中具有一个或多个突变;和/或所述TCR在β链可变区氨基酸第11、13、19、21、53、76、89、91、或第94位,和/或β链J基因短肽氨基酸倒数第2位、倒数第4位或倒数第6位中具有一个或多个突变,其中氨基酸位置编号按IMGT(国际免疫遗传学信息系统)中列出的位置编号。In another preferred embodiment, the TCR is at the 11th, 13th, 19th, 21st, 53rd, 76th, 89th, 91st, or 94th amino acid position of the α chain variable region, and/or the reciprocal amino acid of the α chain J gene short peptide has one or more mutations in position 3, 5 from the bottom, or 7 from the bottom; and/or the TCR is at amino acids 11, 13, 19, 21, 53, 76, 89, 91 of the beta chain variable region , or position 94, and/or one or more mutations in the penultimate amino acid position 2, 4 or 6 of the β-chain J gene short peptide, wherein the amino acid positions are numbered according to IMGT (International Information on Immunogenetics) system) listed in the position number.

在另一优选例中,所述TCR包括(a)除跨膜结构域以外的全部或部分TCRα链;以及(b)除跨膜结构域以外的全部或部分TCRβ链;In another preferred embodiment, the TCR comprises (a) all or part of the TCRα chain excluding the transmembrane domain; and (b) all or part of the TCRβ chain excluding the transmembrane domain;

并且(a)和(b)各自包含功能性可变结构域,或包含功能性可变结构域和所述TCR链恒定结构域的至少一部分。And (a) and (b) each comprise a functional variable domain, or comprise a functional variable domain and at least a portion of said TCR chain constant domain.

在另一优选例中,半胱氨酸残基在所述TCR的α和β链恒定域之间形成人工二硫键。In another preferred embodiment, cysteine residues form an artificial disulfide bond between the constant domains of the α and β chains of the TCR.

在另一优选例中,在所述TCR中形成人工二硫键的半胱氨酸残基取代了选自下列的一组或多组位点:In another preferred embodiment, the cysteine residues forming artificial disulfide bonds in the TCR are substituted with one or more sites selected from the following groups:

TRAC*01外显子1的Thr48和TRBC1*01或TRBC2*01外显子1的Ser57;Thr48 in exon 1 of TRAC*01 and Ser57 in exon 1 of TRBC1*01 or TRBC2*01;

TRAC*01外显子1的Thr45和TRBC1*01或TRBC2*01外显子1的Ser77;Thr45 in exon 1 of TRAC*01 and Ser77 in exon 1 of TRBC1*01 or TRBC2*01;

TRAC*01外显子1的Tyr10和TRBC1*01或TRBC2*01外显子1的Ser17;Tyr10 of exon 1 of TRAC*01 and Ser17 of exon 1 of TRBC1*01 or TRBC2*01;

TRAC*01外显子1的Thr45和TRBC1*01或TRBC2*01外显子1的Asp59;Thr45 of exon 1 of TRAC*01 and Asp59 of exon 1 of TRBC1*01 or TRBC2*01;

TRAC*01外显子1的Ser15和TRBC1*01或TRBC2*01外显子1的Glu15;Ser15 of exon 1 of TRAC*01 and Glu15 of exon 1 of TRBC1*01 or TRBC2*01;

TRAC*01外显子1的Arg53和TRBC1*01或TRBC2*01外显子1的Ser54;Arg53 in exon 1 of TRAC*01 and Ser54 in exon 1 of TRBC1*01 or TRBC2*01;

TRAC*01外显子1的Pro89和TRBC1*01或TRBC2*01外显子1的Ala19;和Pro89 of exon 1 of TRAC*01 and Ala19 of exon 1 of TRBC1*01 or TRBC2*01; and

TRAC*01外显子1的Tyr10和TRBC1*01或TRBC2*01外显子1的Glu20。Tyr10 of exon 1 of TRAC*01 and Glu20 of exon 1 of TRBC1*01 or TRBC2*01.

在另一优选例中,所述TCR的α链氨基酸序列为SEQ ID NO.26和/或所述TCR的β链氨基酸序列为SEQ ID NO.28。In another preferred embodiment, the amino acid sequence of the α chain of the TCR is SEQ ID NO.26 and/or the amino acid sequence of the β chain of the TCR is SEQ ID NO.28.

在另一优选例中,所述TCR的α链可变区与β链恒定区之间含有人工链间二硫键。In another preferred embodiment, an artificial interchain disulfide bond is contained between the variable region of the α chain and the constant region of the β chain of the TCR.

在另一优选例中,其特征在于,在所述TCR中形成人工链间二硫键的半胱氨酸残基取代了选自下列的一组或多组位点:In another preferred embodiment, it is characterized in that the cysteine residues that form artificial interchain disulfide bonds in the TCR are substituted with one or more sites selected from the following groups:

TRAV的第46位氨基酸和TRBC1*01或TRBC2*01外显子1的第60位氨基酸;Amino acid 46 of TRAV and amino acid 60 of exon 1 of TRBC1*01 or TRBC2*01;

TRAV的第47位氨基酸和TRBC1*01或TRBC2*01外显子1的61位氨基酸;Amino acid 47 of TRAV and amino acid 61 of exon 1 of TRBC1*01 or TRBC2*01;

TRAV的第46位氨基酸和TRBC1*01或TRBC2*01外显子1的第61位氨基酸;或Amino acid 46 of TRAV and amino acid 61 of exon 1 of TRBC1*01 or TRBC2*01; or

TRAV的第47位氨基酸和TRBC1*01或TRBC2*01外显子1的第60位氨基酸。Amino acid 47 of TRAV and amino acid 60 of exon 1 of TRBC1*01 or TRBC2*01.

在另一优选例中,所述TCR包含α链可变域和β链可变域以及除跨膜结构域以外的全部或部分β链恒定域,但其不包含α链恒定域,所述TCR的α链可变域与β链形成异质二聚体。In another preferred embodiment, the TCR comprises an α-chain variable domain and a β-chain variable domain and all or part of the β-chain constant domain except the transmembrane domain, but it does not comprise an α-chain constant domain, and the TCR The α chain variable domain forms a heterodimer with the β chain.

在另一优选例中,所述TCR的α链和/或β链的C-或N-末端结合有偶联物。In another preferred embodiment, a conjugate is bound to the C- or N-terminus of the α chain and/or the β chain of the TCR.

在另一优选例中,与所述T细胞受体结合的偶联物为可检测标记物、治疗剂、PK修饰部分或任何这些物质的组合。优选地,所述治疗剂为抗-CD3抗体。In another preferred embodiment, the conjugate bound to the T cell receptor is a detectable label, a therapeutic agent, a PK modification moiety or a combination of any of these substances. Preferably, the therapeutic agent is an anti-CD3 antibody.

本发明的第二方面,提供了一种多价TCR复合物,其包含至少两个TCR分子,并且其中的至少一个TCR分子为本发明第一方面所述的TCR。The second aspect of the present invention provides a multivalent TCR complex comprising at least two TCR molecules, and at least one of the TCR molecules is the TCR described in the first aspect of the present invention.

本发明的第三方面,提供了一种核酸分子,所述核酸分子包含编码本发明第一方面所述的TCR分子的核酸序列或其互补序列。The third aspect of the present invention provides a nucleic acid molecule comprising a nucleic acid sequence encoding the TCR molecule described in the first aspect of the present invention or a complementary sequence thereof.

在另一优选例中,所述核酸分子包含编码TCRα链可变域的核苷酸序列SEQ ID NO:2。In another preferred embodiment, the nucleic acid molecule comprises the nucleotide sequence of SEQ ID NO: 2 encoding the variable domain of the TCRα chain.

在另一优选例中,所述的核酸分子包含编码TCRβ链可变域的核苷酸序列SEQ IDNO:6。In another preferred embodiment, the nucleic acid molecule comprises the nucleotide sequence of SEQ ID NO: 6 encoding the variable domain of the TCRβ chain.

在另一优选例中,所述核酸分子包含编码TCRα链的核苷酸序列SEQ ID NO:4和/或包含编码TCRβ链的核苷酸序列SEQ ID NO:8。In another preferred embodiment, the nucleic acid molecule comprises the nucleotide sequence of SEQ ID NO:4 encoding the TCRα chain and/or the nucleotide sequence of SEQ ID NO:8 encoding the TCRβ chain.

本发明的第四方面,提供了一种载体,所述的载体含有本发明第三方面所述的核酸分子;优选地,所述的载体为病毒载体;更优选地,所述的载体为慢病毒载体。The fourth aspect of the present invention provides a vector, which contains the nucleic acid molecule described in the third aspect of the present invention; preferably, the vector is a viral vector; more preferably, the vector is a viral vector viral vector.

本发明的第五方面,提供了一种分离的宿主细胞,所述的宿主细胞中含有本发明第四方面所述的载体或基因组中整合有外源的本发明第三方面所述的核酸分子。The fifth aspect of the present invention provides an isolated host cell, wherein the host cell contains the vector described in the fourth aspect of the present invention or the exogenous nucleic acid molecule described in the third aspect of the present invention is integrated into the genome .

本发明的第六方面,提供了一种细胞,所述细胞转导本发明第三方面所述的核酸分子或本发明第四方面所述的载体;优选地,所述细胞为T细胞或干细胞。The sixth aspect of the present invention provides a cell that transduces the nucleic acid molecule described in the third aspect of the present invention or the vector described in the fourth aspect of the present invention; preferably, the cell is a T cell or a stem cell .

本发明的第七方面,提供了一种药物组合物,所述组合物含有药学上可接受的载体以及本发明第一方面所述的TCR、本发明第二方面所述的TCR复合物、本发明第三方面所述的核酸分子、本发明第四方面所述的载体、或本发明第六方面所述的细胞。A seventh aspect of the present invention provides a pharmaceutical composition comprising a pharmaceutically acceptable carrier, the TCR described in the first aspect of the present invention, the TCR complex described in the second aspect of the present invention, the present The nucleic acid molecule of the third aspect of the present invention, the vector of the fourth aspect of the present invention, or the cell of the sixth aspect of the present invention.

本发明的第八方面,提供了本发明第一方面所述的T细胞受体、或本发明第二方面所述的TCR复合物、本发明第三方面所述的核酸分子、本发明第四方面所述的载体、或本发明第六方面所述的细胞的用途,用于制备治疗肿瘤或自身免疫疾病的药物。The eighth aspect of the present invention provides the T cell receptor of the first aspect of the present invention, or the TCR complex of the second aspect of the present invention, the nucleic acid molecule of the third aspect of the present invention, and the fourth aspect of the present invention. The use of the vector described in the aspect, or the cell described in the sixth aspect of the present invention, is used to prepare a medicament for treating tumors or autoimmune diseases.

本发明的第九方面,提供了一种治疗疾病的方法,包括给需要治疗的对象施用适量的本发明第一方面所述的T细胞受体、或本发明第二方面所述的TCR复合物、本发明第三方面所述的核酸分子、本发明第四方面所述的载体、或本发明第六方面所述的细胞、或本发明第七方面所述的药物组合物;The ninth aspect of the present invention provides a method for treating a disease, comprising administering an appropriate amount of the T cell receptor described in the first aspect of the present invention or the TCR complex described in the second aspect of the present invention to a subject in need of treatment , the nucleic acid molecule described in the third aspect of the present invention, the vector described in the fourth aspect of the present invention, or the cell described in the sixth aspect of the present invention, or the pharmaceutical composition described in the seventh aspect of the present invention;

优选地,所述的疾病为肿瘤,优选地所述肿瘤包括黑色素瘤,以及其他肿瘤如胃癌、肺癌(如,肺鳞状细胞癌)、食道癌、膀胱癌、头颈部肿瘤(如,头颈部鳞状细胞癌)、前列腺癌、乳腺癌、结肠癌、卵巢癌、肾细胞癌、霍杰金氏淋巴瘤、肉瘤、成神经管细胞瘤、白血病等。Preferably, the disease is a tumor, preferably the tumor includes melanoma, and other tumors such as gastric cancer, lung cancer (eg, lung squamous cell carcinoma), esophagus cancer, bladder cancer, head and neck tumors (eg, head and neck cancers). Neck squamous cell carcinoma), prostate cancer, breast cancer, colon cancer, ovarian cancer, renal cell carcinoma, Hodgkin's lymphoma, sarcoma, medulloblastoma, leukemia, etc.

在另一优选例中,所述肿瘤包括黑色素瘤、膀胱癌、肝癌、表皮样癌、非小细胞肺癌和鳞状细胞癌。In another preferred embodiment, the tumor includes melanoma, bladder cancer, liver cancer, epidermoid carcinoma, non-small cell lung cancer and squamous cell carcinoma.

应理解,在本发明范围内中,本发明的上述各技术特征和在下文(如实施例)中具体描述的各技术特征之间都可以互相组合,从而构成新的或优选的技术方案。限于篇幅,在此不再一一累述。It should be understood that within the scope of the present invention, the above -mentioned technical characteristics of the present invention and the technical characteristics described in the following (implementation examples) can be combined with each other to form a new or preferred technical solution. Due to space limitations, it is not repeated here.

附图说明Description of drawings

图1a、图1b、图1c、图1d、图1e和图1f分别为TCRα链可变域氨基酸序列、TCRα链可变域核苷酸序列、TCRα链氨基酸序列、TCRα链核苷酸序列、具有前导序列的TCRα链氨基酸序列以及具有前导序列的TCRα链核苷酸序列。Fig. 1a, Fig. 1b, Fig. 1c, Fig. 1d, Fig. 1e and Fig. 1f are respectively the amino acid sequence of TCRα chain variable domain, the nucleotide sequence of TCRα chain variable domain, the amino acid sequence of TCRα chain, the nucleotide sequence of TCRα chain, with The amino acid sequence of the TCRα chain of the leader sequence and the nucleotide sequence of the TCRα chain with the leader sequence.

图2a、图2b、图2c、图2d、图2e和图2f分别为TCRβ链可变域氨基酸序列、TCRβ链可变域核苷酸序列、TCRβ链氨基酸序列、TCRβ链核苷酸序列、具有前导序列的TCRβ链氨基酸序列以及具有前导序列的TCRβ链核苷酸序列。Figure 2a, Figure 2b, Figure 2c, Figure 2d, Figure 2e and Figure 2f are the amino acid sequence of the variable domain of the TCRβ chain, the nucleotide sequence of the variable domain of the TCRβ chain, the amino acid sequence of the TCRβ chain, and the nucleotide sequence of the TCRβ chain, respectively. The amino acid sequence of the TCR beta chain of the leader sequence and the nucleotide sequence of the TCR beta chain with the leader sequence.

图3为单克隆细胞的CD8+及四聚体-PE双阳性染色结果。Figure 3 shows the results of CD8 + and tetramer-PE double positive staining of monoclonal cells.

图4a和图4b分别为可溶性TCRα链的氨基酸序列和核苷酸序列。Figure 4a and Figure 4b show the amino acid sequence and nucleotide sequence of the soluble TCRα chain, respectively.

图5a和图5b分别为可溶性TCRβ链的氨基酸序列和核苷酸序列。Figure 5a and Figure 5b are the amino acid sequence and nucleotide sequence of the soluble TCR beta chain, respectively.

图6为纯化后得到的可溶性TCR的胶图。最左侧泳道为还原胶,中间泳道为分子量标记(marker),最右侧泳道为非还原胶。Figure 6 is a gel image of the soluble TCR obtained after purification. The leftmost lane is the reducing gel, the middle lane is the molecular weight marker, and the rightmost lane is the non-reducing gel.

图7为本发明可溶性TCR与VFSTVPPAFI-HLA A2402复合物结合的ProteOnFigure 7 is the ProteOn binding of soluble TCR of the present invention to VFSTVPPAFI-HLA A2402 complex

动力学图谱。Kinetic diagram.

图8为四聚体染色TCR转导的原代T细检测结果。Figure 8 shows the detection results of primary T cells transduced by tetramer staining TCR.

图9为ELISPOT试验检测结果。Figure 9 shows the detection results of the ELISPOT test.

图10本发明TCR转导的T细胞对特异性靶细胞的杀伤作用结果图。Fig. 10 is a graph showing the killing effect of T cells transduced by the TCR of the present invention on specific target cells.

具体实施方式Detailed ways

本发明人经过广泛而深入的研究,找到了与SAGE1抗原短肽VFSTVPPAFI(SEQ IDNO.9)能够特异性结合的TCR,所述抗原短肽VFSTVPPAFI可与HLA A2402形成复合物并一起被呈递到细胞表面。本发明还提供了编码所述TCR的核酸分子以及包含所述核酸分子的载体。另外,本发明还提供了转导本发明TCR的细胞。After extensive and in-depth research, the inventors found a TCR that can specifically bind to the SAGE1 antigen short peptide VFSTVPPAFI (SEQ ID NO. 9), which can form a complex with HLA A2402 and be presented to cells together surface. The present invention also provides a nucleic acid molecule encoding the TCR and a vector comprising the nucleic acid molecule. In addition, the present invention also provides cells transduced with the TCR of the present invention.

术语the term

MHC分子是免疫球蛋白超家族的蛋白质,可以是I类或II类MHC分子。因此,其对于抗原的呈递具有特异性,不同的个体有不同的MHC,能呈递一种蛋白抗原中不同的短肽到各自的APC细胞表面。人类的MHC通常称为HLA基因或HLA复合体。MHC molecules are proteins of the immunoglobulin superfamily and can be class I or class II MHC molecules. Therefore, it is specific for antigen presentation, and different individuals have different MHCs, which can present different short peptides in a protein antigen to their respective APC cell surfaces. The human MHC is often referred to as the HLA gene or HLA complex.

T细胞受体(TCR),是呈递在主组织相容性复合体(MHC)上的特异性抗原肽的唯一受体。在免疫系统中,通过抗原特异性的TCR与pMHC复合物的结合引发T细胞与抗原呈递细胞(APC)直接的物理接触,然后T细胞及APC两者的其他细胞膜表面分子就发生相互作用,这就引起了一系列后续的细胞信号传递和其他生理反应,从而使得不同抗原特异性的T细胞对其靶细胞发挥免疫效应。The T cell receptor (TCR) is the only receptor for specific antigenic peptides presented on the major histocompatibility complex (MHC). In the immune system, direct physical contact between T cells and antigen-presenting cells (APCs) is triggered by the binding of antigen-specific TCRs to pMHC complexes, and then other cell membrane surface molecules of both T cells and APCs interact. It causes a series of subsequent cell signaling and other physiological responses, so that T cells with different antigen specificities exert immune effects on their target cells.

TCR是由α链/β链或者γ链/δ链以异质二聚体形式存在的细胞膜表面的糖蛋白。在95%的T细胞中TCR异质二聚体由α和β链组成,而5%的T细胞具有由γ和δ链组成的TCR。天然αβ异质二聚TCR具有α链和β链,α链和β链构成αβ异源二聚TCR的亚单位。广义上讲,α和β各链包含可变区、连接区和恒定区,β链通常还在可变区和连接区之间含有短的多变区,但该多变区常视作连接区的一部分。各可变区包含嵌合在框架结构(framework regions)中的3个CDR(互补决定区),CDR1、CDR2和CDR3。CDR区决定了TCR与pMHC复合物的结合,其中CDR3由可变区和连接区重组而成,被称为超变区。TCR的α和β链一般看作各有两个“结构域”即可变域和恒定域,可变域由连接的可变区和连接区构成。TCR恒定域的序列可以在国际免疫遗传学信息系统(IMGT)的公开数据库中找到,如TCR分子α链的恒定域序列为“TRAC*01”,TCR分子β链的恒定域序列为“TRBC1*01”或“TRBC2*01”。此外,TCR的α和β链还包含跨膜区和胞质区,胞质区很短。TCR is a glycoprotein on the surface of the cell membrane that exists in the form of heterodimers of α chain/β chain or γ chain/δ chain. TCR heterodimers consist of alpha and beta chains in 95% of T cells, whereas 5% of T cells have TCRs composed of gamma and delta chains. A native αβ heterodimeric TCR has an α chain and a β chain, and the α chain and the β chain constitute the subunits of the αβ heterodimeric TCR. Broadly speaking, the alpha and beta chains each contain a variable region, a linker region, and a constant region, and the beta chain usually also contains a short variable region between the variable region and the linker region, but the variable region is often regarded as the linker region a part of. Each variable region comprises 3 CDRs (complementarity determining regions), CDR1, CDR2 and CDR3, chimeric in framework regions. The CDR region determines the binding of TCR to the pMHC complex, and CDR3 is recombined from the variable region and the linker region, which is called the hypervariable region. The alpha and beta chains of a TCR are generally viewed as having two "domains" each, a variable domain and a constant domain, the variable domains being composed of linked variable and linking regions. The sequences of the TCR constant domains can be found in the public database of the International Immunogenetics Information System (IMGT). 01" or "TRBC2*01". In addition, the α and β chains of TCR also contain a transmembrane region and a cytoplasmic region, and the cytoplasmic region is very short.

在本发明中,术语“本发明多肽”、“本发明的TCR”、“本发明的T细胞受体”可互换使用。In the present invention, the terms "polypeptide of the present invention", "TCR of the present invention", "T cell receptor of the present invention" are used interchangeably.

天然链间二硫键与人工链间二硫键Natural interchain disulfide bonds and artificial interchain disulfide bonds

在天然TCR的近膜区Cα与Cβ链间存在一组二硫键,本发明中称为“天然链间二硫键”。在本发明中,将人工引入的,位置与天然链间二硫键的位置不同的链间共价二硫键称为“人工链间二硫键”。There is a set of disulfide bonds between the Cα and Cβ chains in the near-membrane region of the native TCR, which are referred to as "native interchain disulfide bonds" in the present invention. In the present invention, the artificially introduced interchain covalent disulfide bond whose position is different from that of the natural interchain disulfide bond is referred to as "artificial interchain disulfide bond".

为方便描述二硫键的位置,本发明中TRAC*01与TRBC1*01或TRBC2*01氨基酸序列的位置编号按从N端到C端依次的顺序进行位置编号,如TRBC1*01或TRBC2*01中,按从N端到C端依次的顺序第60个氨基酸为P(脯氨酸),则本发明中可将其描述为TRBC1*01或TRBC2*01外显子1的Pro60,也可将其表述为TRBC1*01或TRBC2*01外显子1的第60位氨基酸,又如TRBC1*01或TRBC2*01中,按从N端到C端依次的顺序第61个氨基酸为Q(谷氨酰胺),则本发明中可将其描述为TRBC1*01或TRBC2*01外显子1的Gln61,也可将其表述为TRBC1*01或TRBC2*01外显子1的第61位氨基酸,其他以此类推。本发明中,可变区TRAV与TRBV的氨基酸序列的位置编号,按照IMGT中列出的位置编号。如TRAV中的某个氨基酸,IMGT中列出的位置编号为46,则本发明中将其描述为TRAV第46位氨基酸,其他以此类推。本发明中,其他氨基酸的序列位置编号有特殊说明的,则按特殊说明。For the convenience of describing the position of the disulfide bond, the position numbers of the amino acid sequences of TRAC*01 and TRBC1*01 or TRBC2*01 in the present invention are numbered sequentially from the N-terminus to the C-terminus, such as TRBC1*01 or TRBC2*01 , the 60th amino acid in the sequence from the N-terminus to the C-terminus is P (proline), then in the present invention, it can be described as Pro60 of exon 1 of TRBC1*01 or TRBC2*01, or it can be described as Pro60 of exon 1 of TRBC1*01 It is expressed as the 60th amino acid of exon 1 of TRBC1*01 or TRBC2*01, and in TRBC1*01 or TRBC2*01, the 61st amino acid in the sequence from the N-terminus to the C-terminus is Q (glutamate). amide), in the present invention, it can be described as Gln61 of TRBC1*01 or TRBC2*01 exon 1, or it can be described as the 61st amino acid of TRBC1*01 or TRBC2*01 exon 1, other And so on. In the present invention, the position numbers of the amino acid sequences of the variable regions TRAV and TRBV are numbered according to the position numbers listed in IMGT. For example, for a certain amino acid in TRAV, the position number listed in IMGT is 46, then it is described as the 46th amino acid of TRAV in the present invention, and so on. In the present invention, if the sequence position numbering of other amino acids has special instructions, the special instructions are followed.

发明详述Detailed description of the invention

TCR分子TCR molecule

在抗原加工过程中,抗原在细胞内被降解,然后通过MHC分子携带至细胞表面。T细胞受体能够识别抗原呈递细胞表面的肽-MHC复合物。因此,本发明的第一方面提供了一种能够结合VFSTVPPAFI-HLA A2402复合物的TCR分子。优选地,所述TCR分子是分离的或纯化的。该TCR的α和β链各具有3个互补决定区(CDR)。During antigen processing, the antigen is degraded within the cell and then carried to the cell surface by MHC molecules. T cell receptors recognize peptide-MHC complexes on the surface of antigen-presenting cells. Accordingly, a first aspect of the present invention provides a TCR molecule capable of binding the VFSTVPPAFI-HLA A2402 complex. Preferably, the TCR molecule is isolated or purified. The alpha and beta chains of this TCR each have three complementarity determining regions (CDRs).

在本发明的一个优选地实施方式中,所述TCR的α链包含具有以下氨基酸序列的CDR:In a preferred embodiment of the present invention, the alpha chain of the TCR comprises a CDR having the following amino acid sequence:

αCDR1-DSAIYN(SEQ ID NO.10)αCDR1-DSAIYN (SEQ ID NO. 10)

αCDR2-IQSSQRE(SEQ ID NO.11)αCDR2-IQSSQRE (SEQ ID NO. 11)

αCDR3-CAVLYTGANSKLTF(SEQ ID NO.12);和/或αCDR3-CAVLYTGANSKLTF (SEQ ID NO. 12); and/or

所述TCRβ链可变域的3个互补决定区为:The three complementarity determining regions of the TCRβ chain variable domain are:

βCDR1-SGHDT(SEQ ID NO.13)βCDR1-SGHDT (SEQ ID NO. 13)

βCDR2-YYEEEE(SEQ ID NO.14)βCDR2-YYEEEE (SEQ ID NO. 14)

CDR3-CASSLVGKQPQHF(SEQ ID NO.15)。CDR3-CASSLVGKQPQHF (SEQ ID NO. 15).

可以将上述本发明的CDR区氨基酸序列嵌入到任何适合的框架结构中来制备嵌合TCR。只要框架结构与本发明的TCR的CDR区兼容,本领域技术人员根据本发明公开的CDR区就能够设计或合成出具有相应功能的TCR分子。因此,本发明TCR分子是指包含上述α和/或β链CDR区序列及任何适合的框架结构的TCR分子。本发明TCRα链可变域为与SEQ ID NO.1具有至少90%,优选地95%,更优选地98%序列相同性的氨基酸序列;和/或本发明TCR链可变域为与SEQ ID NO:5具有至少90%,优选地95%,更优选地98%序列相同性的氨基酸序列。Chimeric TCRs can be prepared by inserting the above-described amino acid sequences of the CDR regions of the present invention into any suitable framework structure. As long as the framework structure is compatible with the CDR regions of the TCR of the present invention, those skilled in the art can design or synthesize TCR molecules with corresponding functions based on the CDR regions disclosed in the present invention. Accordingly, the TCR molecule of the present invention refers to a TCR molecule comprising the above-mentioned alpha and/or beta chain CDR region sequences and any suitable framework structure. The TCRα chain variable domain of the present invention is an amino acid sequence having at least 90%, preferably 95%, more preferably 98% sequence identity with SEQ ID NO. 1; and/or the TCR chain variable domain of the present invention is an amino acid sequence with SEQ ID NO. NO:5 has an amino acid sequence of at least 90%, preferably 95%, more preferably 98% sequence identity.

在本发明的一个优选例中,本发明的TCR分子是由α与β链构成的异质二聚体。具体地,一方面所述异质二聚TCR分子的α链包含可变域和恒定域,所述α链可变域氨基酸序列包含上述α链的CDR1(SEQ ID NO:10)、CDR2(SEQ ID NO:11)和CDR3(SEQ ID NO.12)。优选地,所述TCR分子包含α链可变域氨基酸序列SEQ ID NO.1。更优选地,所述TCR分子的α链可变域氨基酸序列为SEQ ID NO.1。另一方面,所述异质二聚TCR分子的β链包含可变域和恒定域,所述β链可变域氨基酸序列包含上述β链的CDR1(SEQ ID NO.13)、CDR2(SEQ ID NO:14)和CDR3(SEQ ID NO.15)。优选地,所述TCR分子包含β链可变域氨基酸序列SEQ ID NO.5。更优选地,所述TCR分子的β链可变域氨基酸序列为SEQ ID NO.5。In a preferred embodiment of the present invention, the TCR molecule of the present invention is a heterodimer composed of α and β chains. Specifically, on the one hand, the α chain of the heterodimeric TCR molecule comprises a variable domain and a constant domain, and the amino acid sequence of the α chain variable domain comprises CDR1 (SEQ ID NO: 10), CDR2 (SEQ ID NO: 10) and CDR2 (SEQ ID NO: 10) of the above-mentioned α chain. ID NO: 11) and CDR3 (SEQ ID NO. 12). Preferably, the TCR molecule comprises the alpha chain variable domain amino acid sequence of SEQ ID NO.1. More preferably, the amino acid sequence of the α chain variable domain of the TCR molecule is SEQ ID NO.1. On the other hand, the β chain of the heterodimeric TCR molecule comprises a variable domain and a constant domain, and the amino acid sequence of the β chain variable domain comprises CDR1 (SEQ ID NO. 13), CDR2 (SEQ ID NO. 13) of the above-mentioned β chain NO: 14) and CDR3 (SEQ ID NO. 15). Preferably, the TCR molecule comprises the beta chain variable domain amino acid sequence of SEQ ID NO.5. More preferably, the amino acid sequence of the beta chain variable domain of the TCR molecule is SEQ ID NO.5.

在本发明的一个优选例中,本发明的TCR分子是由α链的部分或全部和/或β链的部分或全部组成的单链TCR分子。有关单链TCR分子的描述可以参考文献Chung et al(1994)Proc.Natl.Acad.Sci.USA 91,12654-12658。根据文献中所述,本领域技术人员能够容易地构建包含本发明CDRs区的单链TCR分子。具体地,所述单链TCR分子包含Vα、Vβ和Cβ,优选地按照从N端到C端的顺序连接。In a preferred embodiment of the present invention, the TCR molecule of the present invention is a single-chain TCR molecule composed of part or all of the α chain and/or part or all of the β chain. A description of single-chain TCR molecules can be found in Chung et al (1994) Proc. Natl. Acad. Sci. USA 91, 12654-12658. Those skilled in the art can readily construct single-chain TCR molecules comprising the CDRs regions of the present invention as described in the literature. Specifically, the single-chain TCR molecule comprises Vα, Vβ and Cβ, preferably linked in order from the N-terminus to the C-terminus.

所述单链TCR分子的α链可变域氨基酸序列包含上述α链的CDR1(SEQ ID NO:10)、CDR2(SEQ ID NO:11)和CDR3(SEQ ID NO:12)。优选地,所述单链TCR分子包含α链可变域氨基酸序列SEQ ID NO.1。更优选地,所述单链TCR分子的α链可变域氨基酸序列为SEQ IDNO.1。所述单链TCR分子的β链可变域氨基酸序列包含上述β链的CDR1(SEQ ID NO:13)、CDR2(SEQ ID NO:14)和CDR3(SEQ ID NO:15)。优选地,所述单链TCR分子包含β链可变域氨基酸序列SEQ ID NO.5。更优选地,所述单链TCR分子的β链可变域氨基酸序列为SEQ ID NO.5。The α-chain variable domain amino acid sequence of the single-chain TCR molecule comprises CDR1 (SEQ ID NO: 10), CDR2 (SEQ ID NO: 11) and CDR3 (SEQ ID NO: 12) of the above-mentioned α chain. Preferably, the single-chain TCR molecule comprises the alpha chain variable domain amino acid sequence of SEQ ID NO.1. More preferably, the amino acid sequence of the α-chain variable domain of the single-chain TCR molecule is SEQ ID NO.1. The beta chain variable domain amino acid sequence of the single-chain TCR molecule comprises CDR1 (SEQ ID NO: 13), CDR2 (SEQ ID NO: 14) and CDR3 (SEQ ID NO: 15) of the above beta chain. Preferably, the single-chain TCR molecule comprises the beta chain variable domain amino acid sequence of SEQ ID NO.5. More preferably, the amino acid sequence of the beta chain variable domain of the single-chain TCR molecule is SEQ ID NO.5.

在本发明的一个优选例中,本发明的TCR分子的恒定域是人的恒定域。本领域技术人员知晓或可以通过查阅相关书籍或IMGT(国际免疫遗传学信息系统)的公开数据库来获得人的恒定域氨基酸序列。例如,本发明TCR分子α链的恒定域序列可以为“TRAC*01”,TCR分子β链的恒定域序列可以为“TRBC1*01”或“TRBC2*01”。IMGT的TRAC*01中给出的氨基酸序列的第53位为Arg,在此表示为:TRAC*01外显子1的Arg53,其他以此类推。优选地,本发明TCR分子α链的氨基酸序列为SEQ ID NO.3,和/或β链的氨基酸序列为SEQ ID NO.7。In a preferred embodiment of the present invention, the constant domain of the TCR molecule of the present invention is a human constant domain. Those skilled in the art know or can obtain the human constant domain amino acid sequence by consulting relevant books or the public database of IMGT (International Immunogenetics Information System). For example, the constant domain sequence of the alpha chain of the TCR molecule of the present invention can be "TRAC*01", and the constant domain sequence of the beta chain of the TCR molecule can be "TRBC1*01" or "TRBC2*01". The 53rd position of the amino acid sequence given in TRAC*01 of IMGT is Arg, which is represented here as: Arg53 of exon 1 of TRAC*01, and so on. Preferably, the amino acid sequence of the α chain of the TCR molecule of the present invention is SEQ ID NO.3, and/or the amino acid sequence of the β chain is SEQ ID NO.7.

天然存在的TCR是一种膜蛋白,通过其跨膜区得以稳定。如同免疫球蛋白(抗体)作为抗原识别分子一样,TCR也可以被开发应用于诊断和治疗,这时需要获得可溶性的TCR分子。可溶性的TCR分子不包括其跨膜区。可溶性TCR有很广泛的用途,它不仅可用于研究TCR与pMHC的相互作用,也可用作检测感染的诊断工具或作为自身免疫病的标志物。类似地,可溶性TCR可以被用来将治疗剂(如细胞毒素化合物或免疫刺激性化合物)输送到呈递特异性抗原的细胞,另外,可溶性TCR还可与其他分子(如,抗-CD3抗体)结合来重新定向T细胞,从而使其靶向呈递特定抗原的细胞。本发明也获得了对SAGE1抗原短肽具有特异性的可溶性TCR。The naturally occurring TCR is a membrane protein that is stabilized by its transmembrane region. Like immunoglobulins (antibodies) as antigen recognition molecules, TCRs can also be developed for diagnostic and therapeutic applications, where soluble TCR molecules need to be obtained. Soluble TCR molecules do not include their transmembrane domains. Soluble TCR has a wide range of uses, not only to study the interaction of TCR with pMHC, but also as a diagnostic tool to detect infection or as a marker for autoimmune diseases. Similarly, soluble TCRs can be used to deliver therapeutic agents (eg, cytotoxic or immunostimulatory compounds) to cells presenting specific antigens, and in addition, soluble TCRs can bind to other molecules (eg, anti-CD3 antibodies) to redirect T cells so that they target cells presenting specific antigens. The present invention also obtains a soluble TCR specific for the SAGE1 antigenic short peptide.

为获得可溶性TCR,一方面,本发明TCR可以是在其α和β链恒定域的残基之间引入人工二硫键的TCR。半胱氨酸残基在所述TCR的α和β链恒定域间形成人工链间二硫键。半胱氨酸残基可以取代在天然TCR中合适位点的其他氨基酸残基以形成人工链间二硫键。例如,取代TRAC*01外显子1的Thr48和取代TRBC1*01或TRBC2*01外显子1的Ser57的半胱氨酸残基来形成二硫键。引入半胱氨酸残基以形成二硫键的其他位点还可以是:TRAC*01外显子1的Thr45和TRBC1*01或TRBC2*01外显子1的Ser77;TRAC*01外显子1的Tyr10和TRBC1*01或TRBC2*01外显子1的Ser17;TRAC*01外显子1的Thr45和TRBC1*01或TRBC2*01外显子1的Asp59;TRAC*01外显子1的Ser15和TRBC1*01或TRBC2*01外显子1的Glu15;TRAC*01外显子1的Arg53和TRBC1*01或TRBC2*01外显子1的Ser54;TRAC*01外显子1的Pro89和TRBC1*01或TRBC2*01外显子1的Ala19;或TRAC*01外显子1的Tyr10和TRBC1*01或TRBC2*01外显子1的Glu20。即半胱氨酸残基取代了上述α与β链恒定域中任一组位点。可在本发明TCR恒定域的一个或多个C末端截短最多50个、或最多30个、或最多15个、或最多10个、或最多8个或更少的氨基酸,以使其不包括半胱氨酸残基来达到缺失天然二硫键的目的,也可通过将形成天然二硫键的半胱氨酸残基突变为另一氨基酸来达到上述目的。To obtain soluble TCRs, in one aspect, the TCRs of the invention may be TCRs in which artificial disulfide bonds are introduced between residues of their alpha and beta chain constant domains. Cysteine residues form artificial interchain disulfide bonds between the constant domains of the alpha and beta chains of the TCR. Cysteine residues can be substituted for other amino acid residues at appropriate sites in the native TCR to form artificial interchain disulfide bonds. For example, substitution of Thr48 of exon 1 of TRAC*01 and substitution of cysteine residues of Ser57 of exon 1 of TRBC1*01 or TRBC2*01 to form a disulfide bond. Other sites where cysteine residues are introduced to form disulfide bonds can also be: Thr45 in exon 1 of TRAC*01 and Ser77 in exon 1 of TRBC1*01 or TRBC2*01; exon 1 of TRAC*01 1 Tyr10 and TRBC1*01 or Ser17 of TRBC2*01 exon 1; Thr45 of TRAC*01 exon 1 and Asp59 of TRBC1*01 or TRBC2*01 exon 1; TRAC*01 exon 1 Ser15 and Glu15 in exon 1 of TRBC1*01 or TRBC2*01; Arg53 in exon 1 of TRAC*01 and Ser54 in exon 1 of TRBC1*01 or TRBC2*01; Pro89 and exon 1 of TRAC*01 Ala19 of exon 1 of TRBC1*01 or TRBC2*01; or Tyr10 of exon 1 of TRAC*01 and Glu20 of exon 1 of TRBC1*01 or TRBC2*01. That is, cysteine residues are substituted for any set of sites in the constant domains of the alpha and beta chains described above. One or more C-termini of the TCR constant domains of the invention may be truncated by up to 50, or up to 30, or up to 15, or up to 10, or up to 8 or fewer amino acids so that they do not include The purpose of deleting the natural disulfide bond can be achieved by the cysteine residue, or by mutating the cysteine residue forming the natural disulfide bond into another amino acid to achieve the above purpose.

如上所述,本发明的TCR可以包含在其α和β链恒定域的残基间引入的人工二硫键。应注意,恒定域间含或不含上文所述的引入的人工二硫键,本发明的TCR均可含有TRAC恒定域序列和TRBC1或TRBC2恒定域序列。TCR的TRAC恒定域序列和TRBC1或TRBC2恒定域序列可通过存在于TCR中的天然二硫键连接。As mentioned above, the TCRs of the present invention may contain artificial disulfide bonds introduced between residues of their alpha and beta chain constant domains. It should be noted that the TCRs of the invention may contain both a TRAC constant domain sequence and a TRBC1 or TRBC2 constant domain sequence, with or without the artificial disulfide bonds introduced above between the constant domains. The TRAC constant domain sequence of the TCR and the TRBC1 or TRBC2 constant domain sequence may be linked by natural disulfide bonds present in the TCR.

为获得可溶性TCR,另一方面,本发明TCR还包括在其疏水芯区域发生突变的TCR,这些疏水芯区域的突变优选为能够使本发明可溶性TCR的稳定性提高的突变,如在公开号为WO2014/206304的专利文献中所述。这样的TCR可在其下列可变域疏水芯位置发生突变:(α和/或β链)可变区氨基酸第11,13,19,21,53,76,89,91,94位,和/或α链J基因(TRAJ)短肽氨基酸位置倒数第3,5,7位,和/或β链J基因(TRBJ)短肽氨基酸位置倒数第2,4,6位,其中氨基酸序列的位置编号按国际免疫遗传学信息系统(IMGT)中列出的位置编号。本领域技术人员知晓上述国际免疫遗传学信息系统,并可根据该数据库得到不同TCR的氨基酸残基在IMGT中的位置编号。In order to obtain a soluble TCR, on the other hand, the TCR of the present invention also includes a TCR with mutation in its hydrophobic core region, and the mutation of these hydrophobic core regions is preferably a mutation that can improve the stability of the soluble TCR of the present invention, such as in Publication No. Described in the patent document of WO2014/206304. Such a TCR may be mutated at the following variable domain hydrophobic core positions: (alpha and/or beta chain) variable domain amino acids 11, 13, 19, 21, 53, 76, 89, 91, 94, and/or Or the 3rd, 5th, 7th amino acid position from the bottom of the alpha chain J gene (TRAJ) short peptide, and/or the 2nd, 4th, and 6th position from the bottom of the amino acid position of the beta chain J gene (TRBJ) short peptide, wherein the position number of the amino acid sequence Numbered by position as listed in the International Information System on Immunogenetics (IMGT). Those skilled in the art are aware of the above-mentioned International Immunogenetics Information System, and can obtain the position numbers of amino acid residues of different TCRs in IMGT according to the database.

本发明中疏水芯区域发生突变的TCR可以是由一柔性肽链连接TCR的α与β链的可变域而构成的稳定性可溶单链TCR。应注意,本发明中柔性肽链可以是任何适合连接TCRα与β链可变域的肽链。In the present invention, the mutated TCR in the hydrophobic core region can be a stable soluble single-chain TCR composed of a flexible peptide chain linking the variable domains of the α and β chains of the TCR. It should be noted that the flexible peptide chain in the present invention can be any peptide chain suitable for linking the variable domains of TCRα and β chain.

另外,对于稳定性而言,专利文献PCT/CN2016/077680还公开了在TCR的α链可变区与β链恒定区之间引入人工链间二硫键能够使TCR的稳定性显著提高。因此,本发明的高亲和力TCR的α链可变区与β链恒定区之间还可以含有人工链间二硫键。具体地,在所述TCR的α链可变区与β链恒定区之间形成人工链间二硫键的半胱氨酸残基取代了:TRAV的第46位氨基酸和TRBC1*01或TRBC2*01外显子1的第60位氨基酸;TRAV的第47位氨基酸和TRBC1*01或TRBC2*01外显子1的61位氨基酸;TRAV的第46位氨基酸和TRBC1*01或TRBC2*01外显子1的第61位氨基酸;或TRAV的第47位氨基酸和TRBC1*01或TRBC2*01外显子1的第60位氨基酸。优选地,这样的TCR可以包含(i)除其跨膜结构域以外的全部或部分TCRα链,和(ii)除其跨膜结构域以外的全部或部分TCR链,其中(i)和(ii)均包含TCR链的可变域和至少一部分恒定域,α链与β链形成异质二聚体。更优选地,这样的TCR可以包含α链可变域和β链可变域以及除跨膜结构域以外的全部或部分β链恒定域,但其不包含α链恒定域,所述TCR的α链可变域与β链形成异质二聚体。In addition, in terms of stability, patent document PCT/CN2016/077680 also discloses that the introduction of artificial interchain disulfide bonds between the α chain variable region and the β chain constant region of TCR can significantly improve the stability of TCR. Therefore, the high-affinity TCR of the present invention may also contain artificial interchain disulfide bonds between the variable region of the α chain and the constant region of the β chain. Specifically, the cysteine residue that forms an artificial interchain disulfide bond between the α chain variable region and the β chain constant region of the TCR is substituted for: amino acid 46 of TRAV and TRBC1*01 or TRBC2* 01 amino acid 60 of exon 1; TRAV amino acid 47 and TRBC1*01 or TRBC2*01 exon 1 amino acid 61; TRAV 46 amino acid and TRBC1*01 or TRBC2*01 exon Amino acid 61 of exon 1; or amino acid 47 of TRAV and amino acid 60 of exon 1 of TRBC1*01 or TRBC2*01. Preferably, such a TCR may comprise (i) all or part of the TCR alpha chain excluding its transmembrane domain, and (ii) all or part of the TCR chain excluding its transmembrane domain, wherein (i) and (ii) ) both contain the variable domain and at least a part of the constant domain of the TCR chain, and the α chain and the β chain form a heterodimer. More preferably, such a TCR may contain an alpha chain variable domain and a beta chain variable domain and all or part of the beta chain constant domain except the transmembrane domain, but it does not contain the alpha chain constant domain, the alpha chain of the TCR. The chain variable domains form heterodimers with beta chains.

本发明的TCR也可以多价复合体的形式提供。本发明的多价TCR复合体包含两个、三个、四个或更多个本发明TCR相结合而形成的多聚物,如可以用p53的四聚结构域来产生四聚体,或多个本发明TCR与另一分子结合而形成的复合物。本发明的TCR复合物可用于体外或体内追踪或靶向呈递特定抗原的细胞,也可用于产生具有此类应用的其他多价TCR复合物的中间体。The TCRs of the present invention may also be provided in the form of multivalent complexes. The multivalent TCR complexes of the present invention comprise two, three, four or more multimers formed by combining the TCRs of the present invention, for example, the tetramerization domain of p53 can be used to generate tetramers, or multiple A complex formed by combining a TCR of the present invention with another molecule. The TCR complexes of the present invention can be used to track or target cells presenting specific antigens in vitro or in vivo, as well as to generate intermediates for other multivalent TCR complexes with such applications.

本发明的TCR可以单独使用,也可与偶联物以共价或其他方式结合,优选以共价方式结合。所述偶联物包括可检测标记物(为诊断目的,其中所述TCR用于检测呈递VFSTVPPAFI-HLA A2402复合物的细胞的存在)、治疗剂、PK(蛋白激酶)修饰部分或任何以上这些物质的组合结合或偶联。The TCR of the present invention can be used alone, or can be combined with the conjugate in a covalent or other manner, preferably in a covalent manner. The conjugate includes a detectable label (for diagnostic purposes, wherein the TCR is used to detect the presence of cells presenting the VFSTVPPAFI-HLA A2402 complex), a therapeutic agent, a PK (protein kinase) modification moiety, or any of the above combination or conjugation.

用于诊断目的的可检测标记物包括但不限于:荧光或发光标记物、放射性标记物、MRI(磁共振成像)或CT(电子计算机X射线断层扫描技术)造影剂、或能够产生可检测产物的酶。Detectable labels for diagnostic purposes include, but are not limited to, fluorescent or luminescent labels, radiolabels, MRI (magnetic resonance imaging) or CT (computed tomography) contrast agents, or capable of producing detectable products enzyme.

可与本发明TCR结合或偶联的治疗剂包括但不限于:1.放射性核素(Koppe等,2005,癌转移评论(Cancer metastasis reviews)24,539);2.生物毒(Chaudhary等,1989,自然(Nature)339,394;Epel等,2002,癌症免疫学和免疫治疗(Cancer Immunology andImmunotherapy)51,565);3.细胞因子如IL-2等(Gillies等,1992,美国国家科学院院刊(PNAS)89,1428;Card等,2004,癌症免疫学和免疫治疗(Cancer Immunology andImmunotherapy)53,345;Halin等,2003,癌症研究(Cancer Research)63,3202);4.抗体Fc片段(Mosquera等,2005,免疫学杂志(The Journal Of Immunology)174,4381);5.抗体scFv片段(Zhu等,1995,癌症国际期刊(International Journal of Cancer)62,319);6.金纳米颗粒/纳米棒(Lapotko等,2005,癌症通信(Cancer letters)239,36;Huang等,2006,美国化学学会杂志(Journal of the American Chemical Society)128,2115);7.病毒颗粒(Peng等,2004,基因治疗(Gene therapy)11,1234);8.脂质体(Mamot等,2005,癌症研究(Cancer research)65,11631);9.纳米磁粒;10.前药激活酶(例如,DT-心肌黄酶(DTD)或联苯基水解酶-样蛋白质(BPHL));11.化疗剂(例如,顺铂)或任何形式的纳米颗粒等。Therapeutic agents that can be conjugated or conjugated to the TCRs of the present invention include, but are not limited to: 1. Radionuclides (Koppe et al., 2005, Cancer metastasis reviews 24, 539); 2. Biotoxicity (Chaudhary et al., 1989) , Nature 339, 394; Epel et al., 2002, Cancer Immunology and Immunotherapy 51, 565); 3. Cytokines such as IL-2, etc. (Gillies et al., 1992, Proceedings of the National Academy of Sciences of the United States of America) (PNAS) 89, 1428; Card et al, 2004, Cancer Immunology and Immunotherapy 53, 345; Halin et al, 2003, Cancer Research 63, 3202); 4. Antibody Fc fragment (Mosquera et al, 2005, The Journal Of Immunology 174, 4381); 5. Antibody scFv fragments (Zhu et al, 1995, International Journal of Cancer 62, 319); 6. Gold nanoparticles/nanoparticles Rod (Lapotko et al, 2005, Cancer letters 239, 36; Huang et al, 2006, Journal of the American Chemical Society 128, 2115); 7. Viral particles (Peng et al, 2004, Genes Gene therapy 11, 1234); 8. Liposomes (Mamot et al., 2005, Cancer research 65, 11631); 9. Nanomagnetic particles; 10. Prodrug-activating enzymes (eg, DT-myocardial flavinase (DTD) or biphenyl hydrolase-like protein (BPHL)); 11. chemotherapeutic agents (eg, cisplatin) or nanoparticles in any form, etc.

另外,本发明的TCR还可以是包含衍生自超过一种物种序列的杂合TCR。例如,有研究显示鼠科TCR在人T细胞中比人TCR能够更有效地表达。因此,本发明TCR可包含人可变域和鼠的恒定域。这一方法的缺陷是可能引发免疫应答。因此,在其用于过继性T细胞治疗时应当有调节方案来进行免疫抑制,以允许表达鼠科的T细胞的植入。Additionally, the TCRs of the present invention may also be hybrid TCRs comprising sequences derived from more than one species. For example, studies have shown that murine TCRs are more efficiently expressed in human T cells than human TCRs. Thus, the TCRs of the present invention may comprise human variable domains and murine constant domains. The downside of this approach is the potential to elicit an immune response. Therefore, there should be a regulatory regime for immunosuppression when it is used in adoptive T cell therapy to allow engraftment of murine expressing T cells.

应理解,本文中氨基酸名称采用国际通用的单英文字母或三英文字母表示,氨基酸名称的单英文字母与三英文字母的对应关系如下:Ala(A)、Arg(R)、Asn(N)、Asp(D)、Cys(C)、Gln(Q)、Glu(E)、Gly(G)、His(H)、Ile(I)、Leu(L)、Lys(K)、Met(M)、Phe(F)、Pro(P)、Ser(S)、Thr(T)、Trp(W)、Tyr(Y)、Val(V)。It should be understood that the names of amino acids in this paper are represented by the international single English letter or three English letters, and the correspondence between the single English letter and the three English letters of the amino acid name is as follows: Ala(A), Arg(R), Asn(N), Asp(D), Cys(C), Gln(Q), Glu(E), Gly(G), His(H), Ile(I), Leu(L), Lys(K), Met(M), Phe(F), Pro(P), Ser(S), Thr(T), Trp(W), Tyr(Y), Val(V).

核酸分子nucleic acid molecule

本发明的第二方面提供了编码本发明第一方面TCR分子或其部分的核酸分子,所述部分可以是一个或多个CDR,α和/或β链的可变域,以及α链和/或β链。A second aspect of the invention provides a nucleic acid molecule encoding a TCR molecule of the first aspect of the invention, or a portion thereof, which portion may be one or more CDRs, variable domains of alpha and/or beta chains, and alpha chains and/or or beta chains.

编码本发明第一方面TCR分子α链CDR区的核苷酸序列如下:The nucleotide sequence encoding the α chain CDR region of the TCR molecule according to the first aspect of the present invention is as follows:

αCDR1-

Figure GPA0000265729970000091
(SEQ ID NO.16)αCDR1-
Figure GPA0000265729970000091
(SEQ ID NO. 16)

αCDR2-

Figure GPA0000265729970000101
(SEQ ID NO.17)αCDR2-
Figure GPA0000265729970000101
(SEQ ID NO. 17)

αCDR3-

Figure GPA0000265729970000102
(SEQ ID NO.18)αCDR3-
Figure GPA0000265729970000102
(SEQ ID NO. 18)

编码本发明第一方面TCR分子β链CDR区的核苷酸序列如下:The nucleotide sequence encoding the beta chain CDR region of the TCR molecule according to the first aspect of the present invention is as follows:

βCDR1-

Figure GPA0000265729970000103
(SEQ ID NO.19)βCDR1-
Figure GPA0000265729970000103
(SEQ ID NO. 19)

βCDR2-

Figure GPA0000265729970000104
(SEQ ID NO.20)βCDR2-
Figure GPA0000265729970000104
(SEQ ID NO. 20)

βCDR3-

Figure GPA0000265729970000105
(SEQ ID NO.21)βCDR3-
Figure GPA0000265729970000105
(SEQ ID NO. 21)

因此,编码本发明TCRα链的本发明核酸分子的核苷酸序列包括SEQ ID NO.16、SEQID NO.17和SEQ ID NO.18,和/或编码本发明TCRβ链的本发明核酸分子的核苷酸序列包括SEQ ID NO.19、SEQ ID NO.20和SEQ ID NO.21。Accordingly, the nucleotide sequences of the nucleic acid molecules of the present invention encoding the TCR alpha chains of the present invention include SEQ ID NO. 16, SEQ ID NO. 17 and SEQ ID NO. 18, and/or the core of the nucleic acid molecules of the present invention encoding the TCR beta chains of the present invention The nucleotide sequences include SEQ ID NO. 19, SEQ ID NO. 20 and SEQ ID NO. 21.

本发明核酸分子的核苷酸序列可以是单链或双链的,该核酸分子可以是RNA或DNA,并且可以包含或不包含内含子。优选地,本发明核酸分子的核苷酸序列不包含内含子但能够编码本发明多肽,例如编码本发明TCRα链可变域的本发明核酸分子的核苷酸序列包括SEQ ID NO.2和/或编码本发明TCRβ链可变域的本发明核酸分子的核苷酸序列包括SEQID NO.6。更优选地,本发明核酸分子的核苷酸序列包含SEQ ID NO.4和/或SEQ ID NO.8。应理解,由于遗传密码的简并,不同的核苷酸序列可以编码相同的多肽。因此,编码本发明TCR的核酸序列可以与本发明附图中所示的核酸序列相同或是简并的变异体。以本发明中的其中一个例子来说明,“简并的变异体”是指编码具有SEQ ID NO.1的蛋白序列,但与SEQ IDNO.2的序列有差别的核酸序列。The nucleotide sequence of the nucleic acid molecule of the invention may be single-stranded or double-stranded, the nucleic acid molecule may be RNA or DNA, and may or may not contain introns. Preferably, the nucleotide sequence of the nucleic acid molecule of the present invention does not contain introns but is capable of encoding the polypeptide of the present invention, for example, the nucleotide sequence of the nucleic acid molecule of the present invention encoding the variable domain of the TCRα chain of the present invention includes SEQ ID NO. 2 and /or the nucleotide sequence of the nucleic acid molecule of the present invention encoding the variable domain of the TCR beta chain of the present invention includes SEQ ID NO.6. More preferably, the nucleotide sequence of the nucleic acid molecule of the present invention comprises SEQ ID NO.4 and/or SEQ ID NO.8. It will be appreciated that due to the degeneracy of the genetic code, different nucleotide sequences can encode the same polypeptide. Accordingly, the nucleic acid sequences encoding the TCRs of the present invention may be identical or degenerate variants of the nucleic acid sequences shown in the figures of the present invention. To illustrate with one of the examples in the present invention, "degenerate variant" refers to a nucleic acid sequence that encodes a protein sequence of SEQ ID NO. 1, but differs from the sequence of SEQ ID NO. 2.

核苷酸序列可以是经密码子优化的。不同的细胞在具体密码子的利用上是不同的,可以根据细胞的类型,改变序列中的密码子来增加表达量。哺乳动物细胞以及多种其他生物的密码子选择表是本领域技术人员公知的。The nucleotide sequence may be codon-optimized. Different cells differ in the use of specific codons. Depending on the type of cell, the codons in the sequence can be changed to increase the amount of expression. Codon usage tables for mammalian cells, as well as various other organisms, are well known to those skilled in the art.

本发明的核酸分子全长序列或其片段通常可以用但不限于PCR扩增法、重组法或人工合成的方法获得。目前,已经可以完全通过化学合成来得到编码本发明TCR(或其片段,或其衍生物)的DNA序列。然后可将该DNA序列引入本领域中已知的各种现有的DNA分子(或如载体)和细胞中。DNA可以是编码链或非编码链。The full-length sequence of the nucleic acid molecule of the present invention or a fragment thereof can generally be obtained by, but not limited to, PCR amplification method, recombinant method or artificial synthesis method. At present, the DNA sequences encoding the TCRs of the present invention (or fragments thereof, or derivatives thereof) can be obtained entirely by chemical synthesis. This DNA sequence can then be introduced into various existing DNA molecules (or eg vectors) and cells known in the art. DNA can be the coding or non-coding strand.

载体carrier

本发明还涉及包含本发明的核酸分子的载体,包括表达载体,即能够在体内或体外表达的构建体。常用的载体包括细菌质粒、噬菌体和动植物病毒。The present invention also relates to vectors comprising the nucleic acid molecules of the present invention, including expression vectors, ie constructs capable of in vivo or in vitro expression. Commonly used vectors include bacterial plasmids, bacteriophages, and animal and plant viruses.

病毒递送系统包括但不限于腺病毒载体、腺相关病毒(AAV)载体、疱疹病毒载体、逆转录病毒载体、慢病毒载体、杆状病毒载体。Viral delivery systems include, but are not limited to, adenoviral vectors, adeno-associated virus (AAV) vectors, herpesvirus vectors, retroviral vectors, lentiviral vectors, baculovirus vectors.

优选地,载体可以将本发明的核苷酸转移至细胞中,例如T细胞中,使得该细胞表达SAGE1抗原特异性的TCR。理想的情况下,该载体应当能够在T细胞中持续高水平地表达。Preferably, the vector can transfer the nucleotides of the invention into cells, such as T cells, such that the cells express TCRs specific for the SAGE1 antigen. Ideally, the vector should be able to express consistently high levels in T cells.

细胞cell

本发明还涉及用本发明的载体或编码序列经基因工程产生的宿主细胞。所述宿主细胞中含有本发明的载体或染色体中整合有本发明的核酸分子。宿主细胞选自:原核细胞和真核细胞,例如大肠杆菌、酵母细胞、CHO细胞等。The present invention also relates to host cells genetically engineered with the vectors or coding sequences of the present invention. The host cell contains the vector of the present invention or the nucleic acid molecule of the present invention is integrated into the chromosome. The host cell is selected from: prokaryotic cells and eukaryotic cells, such as E. coli, yeast cells, CHO cells, and the like.

另外,本发明还包括表达本发明的TCR的分离的细胞,特别是T细胞。该T细胞可衍生自从受试者分离的T细胞,或者可以是从受试者中分离的混合细胞群,诸如外周血淋巴细胞(PBL)群的一部分。如,该细胞可以分离自外周血单核细胞(PBMC),可以是CD4+辅助T细胞或CD8+细胞毒性T细胞。该细胞可在CD4+辅助T细胞/CD8+细胞毒性T细胞的混合群中。一般地,该细胞可以用抗体(如,抗-CD3或抗-CD28的抗体)活化,以便使它们能够更容易接受转染,例如用包含编码本发明TCR分子的核苷酸序列的载体进行转染。In addition, the present invention also includes isolated cells, in particular T cells, expressing the TCRs of the present invention. The T cells can be derived from T cells isolated from the subject, or can be part of a mixed population of cells isolated from the subject, such as a peripheral blood lymphocyte (PBL) population. For example, the cells can be isolated from peripheral blood mononuclear cells (PBMCs) and can be CD4 + helper T cells or CD8 + cytotoxic T cells. The cells can be in a mixed population of CD4 + helper T cells/CD8 + cytotoxic T cells. Typically, the cells can be activated with antibodies (eg, anti-CD3 or anti-CD28 antibodies) to render them more receptive to transfection, eg, with a vector comprising a nucleotide sequence encoding a TCR molecule of the invention dye.

备选地,本发明的细胞还可以是或衍生自干细胞,如造血干细胞(HSC)。将基因转移至HSC不会导致在细胞表面表达TCR,因为干细胞表面不表达CD3分子。然而,当干细胞分化为迁移至胸腺的淋巴前体(lymphoid precursor)时,CD3分子的表达将启动在胸腺细胞的表面表达该引入的TCR分子。Alternatively, the cells of the invention may also be or derived from stem cells, such as hematopoietic stem cells (HSCs). Gene transfer to HSCs does not result in TCR expression on the cell surface because the CD3 molecule is not expressed on the surface of stem cells. However, when stem cells differentiate into lymphoid precursors that migrate to the thymus, expression of the CD3 molecule will initiate expression of the introduced TCR molecule on the surface of the thymocytes.

有许多方法适合于用编码本发明TCR的DNA或RNA进行T细胞转染(如,Robbins等.,(2008)J.Immunol.180:6116-6131)。表达本发明TCR的T细胞可以用于过继免疫治疗。本领域技术人员能够知晓进行过继性治疗的许多合适方法(如,Rosenberg等.,(2008)Nat RevCancer8(4):299-308)。There are a number of methods suitable for transfection of T cells with DNA or RNA encoding the TCRs of the invention (eg, Robbins et al., (2008) J. Immunol. 180:6116-6131). T cells expressing the TCR of the present invention can be used for adoptive immunotherapy. Those skilled in the art are aware of many suitable methods for adopting adoptive therapy (eg, Rosenberg et al., (2008) Nat RevCancer 8(4):299-308).

SAGE1抗原相关疾病SAGE1 antigen-related diseases

本发明还涉及在受试者中治疗和/或预防与SAGE1相关疾病的方法,其包括过继性转移SAGE1特异性T细胞至该受试者的步骤。该SAGE1特异性T细胞可识别VFSTVPPAFI-HLAA2402复合物。The present invention also relates to a method of treating and/or preventing a disease associated with SAGE1 in a subject comprising the step of adoptively transferring SAGE1-specific T cells to the subject. The SAGE1-specific T cells recognize the VFSTVPPAFI-HLAA2402 complex.

本发明的SAGE1特异性的T细胞可用于治疗任何呈递SAGE1抗原短肽VFSTVPPAFI-HLA A2402复合物的SAGE1相关疾病。包括但不限于肿瘤,如黑色素瘤,以及其他实体肿瘤如胃癌、肺癌、食道癌、膀胱癌、头颈部鳞状细胞癌、前列腺癌、乳腺癌、结肠癌、卵巢癌等。The SAGE1-specific T cells of the present invention can be used to treat any SAGE1-related disease that presents the SAGE1 antigen short peptide VFSTVPPAFI-HLA A2402 complex. Including but not limited to tumors, such as melanoma, and other solid tumors such as gastric, lung, esophageal, bladder, head and neck squamous cell carcinoma, prostate, breast, colon, ovarian, and the like.

治疗方法treatment method

可以通过分离患有与SAGE1抗原相关疾病的病人或志愿者的T细胞,并将本发明的TCR导入上述T细胞中,随后将这些基因工程修饰的细胞回输到病人体内来进行治疗。因此,本发明提供了一种治疗SAGE1相关疾病的方法,包括将分离的表达本发明TCR的T细胞,优选地,该T细胞来源于病人本身,输入到病人体内。一般地,包括(1)分离病人的T细胞,(2)用本发明核酸分子或能够编码本发明TCR分子的核酸分子体外转导T细胞,(3)将基因工程修饰的T细胞输入到病人体内。分离、转染及回输的细胞的数量可以由医师决定。Treatment can be performed by isolating T cells from patients or volunteers suffering from a disease associated with the SAGE1 antigen, introducing the TCR of the present invention into the above T cells, and then infusing these genetically engineered cells back into the patient. Therefore, the present invention provides a method for treating SAGE1-related diseases, comprising infusing the isolated T cells expressing the TCR of the present invention, preferably, the T cells are derived from the patient itself, into the patient. Typically, this involves (1) isolating T cells from a patient, (2) transducing T cells in vitro with a nucleic acid molecule of the invention or a nucleic acid molecule capable of encoding a TCR molecule of the invention, and (3) infusing genetically engineered T cells into a patient in vivo. The number of cells isolated, transfected, and reinfused can be determined by the physician.

本发明的主要优点在于:The main advantages of the present invention are:

(1)本发明的TCR能够与SAGE1抗原短肽复合物VFSTVPPAFI-HLA A2402结合,同时转导了本发明TCR的细胞能够被特异性激活并且对靶细胞具有很强的杀伤作用。(1) The TCR of the present invention can bind to the SAGE1 antigen short peptide complex VFSTVPPAFI-HLA A2402, and the cells transduced with the TCR of the present invention can be specifically activated and have a strong killing effect on target cells.

下面的具体实施例,进一步阐述本发明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。下列实施例中未注明具体条件的实验方法,通常按照常规条件,例如(Sambrook和Russell等人,分子克隆:实验室手册(Molecular Cloning-A LaboratoryManual)(第三版)(2001)CSHL出版社)中所述的条件,或按照制造厂商所建议的条件。除非另外说明,否则百分比和份数按重量计算。除非另外说明,否则百分比和份数按重量计算。以下实施例中所用的实验材料和试剂如无特别说明均可从市售渠道获得。The following specific examples further illustrate the present invention. It should be understood that these examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention. The experimental method of unreceipted specific conditions in the following examples, usually according to conventional conditions, such as (Sambrook and Russell et al, Molecular Cloning: Laboratory Manual (Molecular Cloning-A Laboratory Manual) (Third Edition) (2001) CSHL Press ), or as recommended by the manufacturer. Percentages and parts are by weight unless otherwise indicated. Percentages and parts are by weight unless otherwise indicated. The experimental materials and reagents used in the following examples can be obtained from commercial sources unless otherwise specified.

实施例1 克隆抗原短肽特异性T细胞Example 1 Cloning of antigen short peptide-specific T cells

利用合成短肽SAGE1PX149 597-606 VFSTVPPAFI(北京赛百盛基因技术有限公司)刺激来自于基因型为HLA-A2402的健康志愿者的外周血淋巴细胞(PBL)。将SAGE1 PX149597-606 VFSTVPPAFI短肽与带有生物素标记的HLA-A*2402复性,制备pHLA单聚体。这些单聚体与用PE标记的链霉亲和素(BD公司)组合成PE标记的四聚体,分选该四聚体及抗CD8-APC双阳性细胞。扩增分选的细胞,并按上述方法进行二次分选,随后用有限稀释法进行单克隆培养。单克隆细胞用四聚体染色,筛选到的双阳性克隆如图3所示。Peripheral blood lymphocytes (PBL) from healthy volunteers with HLA-A2402 genotype were stimulated with the synthetic short peptide SAGE1PX149 597-606 VFSTVPPAFI (Beijing Saibaisheng Gene Technology Co., Ltd.). The SAGE1 PX149597-606 VFSTVPPAFI short peptide was renatured with biotin-labeled HLA-A*2402 to prepare pHLA monomers. These monomers were combined with PE-labeled streptavidin (BD) to form PE-labeled tetramers, and the tetramers and anti-CD8-APC double positive cells were sorted. The sorted cells were expanded and subjected to secondary sorting as described above, followed by monoclonal culture by limiting dilution. Monoclonal cells were stained with tetramers, and the screened double-positive clones were shown in Figure 3.

实施例2 获取本发明抗原短肽特异性T细胞克隆的TCR基因与载体的构建Example 2 Construction of TCR gene and vector for obtaining antigen short peptide-specific T cell clones of the present invention

用Quick-RNATMMiniPrep(ZYMO research)抽提实施例1中筛选到的SAGE1 PX149597-606VFSTVPPAFI特异性、HLA-A2402限制性的T细胞克隆的总RNA。cDNA的合成采用clontech的SMART RACE cDNA扩增试剂盒,采用的引物是设计在在人类TCR基因的C端保守区。将序列克隆至T载体(TAKARA)上进行测序。经测序,该双阳性克隆表达的TCR的α链和β链序列结构分别如图1和图2所示,图1a、图1b、图1c和图1d分别为TCRα链可变域氨基酸序列、TCRα链可变域核苷酸序列、TCRα链氨基酸序列和TCRα链核苷酸序列;图2a、图2b、图2c和图2d分别为TCRβ链可变域氨基酸序列、TCRβ链可变域核苷酸序列、TCRβ链氨基酸序列和TCRβ链核苷酸序列。The total RNA of the SAGE1 PX149597-606VFSTVPPAFI-specific, HLA-A2402-restricted T cell clone screened in Example 1 was extracted with Quick-RNA MiniPrep (ZYMO research). The cDNA was synthesized using clontech's SMART RACE cDNA amplification kit, and the primers used were designed in the C-terminal conserved region of the human TCR gene. The sequence was cloned into T vector (TAKARA) for sequencing. After sequencing, the sequence structures of the α chain and β chain of the TCR expressed by the double-positive clone are shown in Figure 1 and Figure 2, respectively. Figure 1a, Figure 1b, Figure 1c, and Figure 1d are the amino acid sequence of the variable domain of TCRα chain, TCRα Chain variable domain nucleotide sequence, TCRα chain amino acid sequence and TCRα chain nucleotide sequence; Figure 2a, Figure 2b, Figure 2c and Figure 2d are the TCRβ chain variable domain amino acid sequence, TCRβ chain variable domain nucleotide sequence, respectively Sequence, TCRβ chain amino acid sequence and TCRβ chain nucleotide sequence.

经鉴定,α链包含具有以下氨基酸序列的CDR:The alpha chain was identified as comprising CDRs with the following amino acid sequence:

αCDR1-DSAIYN(SEQ ID NO.10)αCDR1-DSAIYN (SEQ ID NO. 10)

αCDR2-IQSSQRE(SEQ ID NO.11)αCDR2-IQSSQRE (SEQ ID NO. 11)

αCDR3-CAVLYTGANSKLTF(SEQ ID NO.12)αCDR3-CAVLYTGANSKLTF (SEQ ID NO. 12)

β链包含具有以下氨基酸序列的CDR:The beta chain contains CDRs with the following amino acid sequence:

βCDR1-SGHDT(SEQ ID NO.13)βCDR1-SGHDT (SEQ ID NO. 13)

βCDR2-YYEEEE(SEQ ID NO.14)βCDR2-YYEEEE (SEQ ID NO. 14)

βCDR3-CASSLVGKQPQHF(SEQ ID NO.15)。βCDR3-CASSLVGKQPQHF (SEQ ID NO. 15).

通过重叠(overlap)PCR分别将TCRα链和β链的可变域各自与小鼠TCRα链和β链的保守域拼接成全长基因并连接至慢病毒表达载体pLenti(addgene)。具体为:用overlapPCR将TCRα链和TCRβ链的全长基因进行连接得到TCRα-2A-TCRβ片段。将慢病毒表达载体及TCRα-2A-TCRβ酶切连接得到pLenti-SAGE1TRA-2A-TRB-IRES-NGFR质粒。作为对照用,同时也构建表达eGFP的慢病毒载体pLenti-eGFP。之后再用293T/17包装假病毒。The variable domains of TCR alpha chain and beta chain, respectively, and the conserved domains of mouse TCR alpha chain and beta chain, respectively, were spliced into full-length genes by overlapping PCR and ligated into the lentiviral expression vector pLenti (addgene). Specifically, the TCRα-2A-TCRβ fragment was obtained by linking the full-length genes of the TCRα chain and the TCRβ chain by overlapPCR. The pLenti-SAGE1TRA-2A-TRB-IRES-NGFR plasmid was obtained by ligating the lentiviral expression vector and TCRα-2A-TCRβ restriction enzyme. As a control, a lentiviral vector pLenti-eGFP expressing eGFP was also constructed. Afterwards, 293T/17 was used to package the pseudovirus.

实施例3 本发明抗原短肽特异性可溶TCR的表达、重折叠和纯化Example 3 Expression, refolding and purification of the antigen short peptide-specific soluble TCR of the present invention

为获得可溶的TCR分子,本发明的TCR分子的α和β链可以分别只包含其可变域及部分恒定域,并且α和β链的恒定域中分别引入了一个半胱氨酸残基以形成人工链间二硫键,引入半胱氨酸残基的位置分别为TRAC*01外显子1的Thr48和TRBC2*01外显子1的Ser57;其α链的氨基酸序列与核苷酸序列分别如图4a和图4b所示,其β链的氨基酸序列与核苷酸序列分别如图5a和图5b所示,引入的半胱氨酸残基以加粗和加下划线字母表示。通过《分子克隆实验室手册》(Molecular Cloning a Laboratory Manual)(第三版,Sambrook和Russell)中描述的标准方法将上述TCRα和β链的目的基因序列经合成后分别插入到表达载体pET28a+(Novagene),上下游的克隆位点分别是NcoI和NotI。插入片段经过测序确认无误。In order to obtain a soluble TCR molecule, the α and β chains of the TCR molecule of the present invention can respectively contain only their variable domains and part of their constant domains, and a cysteine residue is introduced into the constant domains of the α and β chains respectively. In order to form an artificial interchain disulfide bond, the positions of introducing cysteine residues are Thr48 of exon 1 of TRAC*01 and Ser57 of exon 1 of TRBC2*01; the amino acid sequence of its α chain is the same as that of nucleotides. The sequences are shown in Fig. 4a and Fig. 4b, respectively, the amino acid sequence and nucleotide sequence of the β chain are shown in Fig. 5a and Fig. 5b, respectively, and the introduced cysteine residues are shown in bold and underlined letters. The target gene sequences of the above TCR α and β chains were synthesized and inserted into the expression vector pET28a+ (Novagene ), the upstream and downstream cloning sites are NcoI and NotI, respectively. The insert was confirmed by sequencing.

将TCRα和β链的表达载体分别通过化学转化法转化进入表达细菌BL21(DE3),细菌用LB培养液生长,于OD600=0.6时用终浓度0.5mM IPTG诱导,TCR的α和β链表达后形成的包涵体通过BugBuster Mix(Novagene)进行提取,并且经BugBuster溶液反复多次洗涤,包涵体最后溶解于6M盐酸胍,10mM二硫苏糖醇(DTT),10mM乙二胺四乙酸(EDTA),20mMTris(pH8.1)中。The expression vectors of TCR α and β chains were transformed into the expression bacteria BL21 (DE3) by chemical transformation, and the bacteria were grown in LB medium and induced with a final concentration of 0.5 mM IPTG at OD600 = 0.6. After the expression of TCR α and β chains The formed inclusion bodies were extracted by BugBuster Mix (Novagene) and washed repeatedly with BugBuster solution. The inclusion bodies were finally dissolved in 6M guanidine hydrochloride, 10mM dithiothreitol (DTT), 10mM ethylenediaminetetraacetic acid (EDTA) , 20mM Tris (pH8.1).

溶解后的TCRα和β链以1∶1的质量比快速混合于5M尿素,0.4M精氨酸,20mMTris(pH8.1),3.7mMcystamine,6.6mMβ-mercapoethylamine(4℃)中,终浓度为60mg/mL。混合后将溶液置于10倍体积的去离子水中透析(4℃),12小时后将去离子水换成缓冲液(20mMTris,pH 8.0)继续于4℃透析12小时。透析完成后的溶液经0.45M的滤膜过滤后,通过阴离子交换柱(HiTrap Q HP,5ml,GE Healthcare)纯化。洗脱峰含有复性成功的α和β二聚体的TCR通过SDS-PAGE胶确认。TCR随后通过凝胶过滤层析(HiPrep 16/60,Sephacryl S-100HR,GEHealthcare)进一步纯化。纯化后的TCR纯度经过SDS-PAGE测定大于90%,浓度由BCA法确定。本发明得到的可溶性TCR的SDS-PAGE胶图如图6所示。The dissolved TCRα and β chains were rapidly mixed in 5M urea, 0.4M arginine, 20mM Tris (pH 8.1), 3.7mM cystamine, 6.6mM β-mercapoethylamine (4°C) at a mass ratio of 1:1, the final concentration was 60mg /mL. After mixing, the solution was dialyzed against 10 volumes of deionized water (4°C). After 12 hours, the deionized water was changed to buffer (20 mM Tris, pH 8.0), and the dialysis was continued at 4°C for 12 hours. After the dialysis was completed, the solution was filtered through a 0.45M filter membrane and purified by an anion exchange column (HiTrap Q HP, 5 ml, GE Healthcare). The eluted peaks of TCR containing successfully renatured α and β dimers were confirmed by SDS-PAGE gel. The TCR was then further purified by gel filtration chromatography (HiPrep 16/60, Sephacryl S-100HR, GE Healthcare). The purity of the purified TCR was more than 90% determined by SDS-PAGE, and the concentration was determined by BCA method. Figure 6 shows the SDS-PAGE gel chart of the soluble TCR obtained by the present invention.

实施例4 结合表征Example 4 Binding Characterization

BIAcore分析BIAcore analysis

本实施例证明了可溶性的本发明TCR分子能够与VFSTVPPAFI-HLAA2402复合物特异性结合。This example demonstrates that soluble TCR molecules of the invention are capable of specifically binding to the VFSTVPPAFI-HLAA2402 complex.

使用BIAcore T200实时分析系统检测实施例3中得到的TCR分子与VFSTVPPAFI-HLA A2402复合物的结合活性。将抗链霉亲和素的抗体(GenScript)加入偶联缓冲液(10mM醋酸钠缓冲液,pH 4.77),然后将抗体流过预先用EDC和NHS活化过的CM5芯片,使抗体固定在芯片表面,最后用乙醇胺的盐酸溶液封闭未反应的活化表面,完成偶联过程,偶联水平约为15,000RU。The binding activity of the TCR molecule obtained in Example 3 to the VFSTVPPAFI-HLA A2402 complex was detected using the BIAcore T200 real-time analysis system. Anti-streptavidin antibody (GenScript) was added to coupling buffer (10 mM sodium acetate buffer, pH 4.77), and the antibody was then immobilized on the chip surface by flowing through a CM5 chip preactivated with EDC and NHS , and finally blocked the unreacted activated surface with ethanolamine hydrochloric acid solution to complete the coupling process with a coupling level of about 15,000RU.

使低浓度的链霉亲和素流过已包被抗体的芯片表面,然后将VFSTVPPAFI-HLAA2402复合物流过检测通道,另一通道作为参比通道,再将0.05mM的生物素以10μL/min的流速流过芯片2min,封闭链霉亲和素剩余的结合位点。A low concentration of streptavidin was flowed over the surface of the chip coated with the antibody, then the VFSTVPPAFI-HLAA2402 complex was flowed through the detection channel, the other channel was used as a reference channel, and 0.05mM biotin was added at 10 μL/min. The flow rate was flowed through the chip for 2 min to block the remaining binding sites of streptavidin.

上述VFSTVPPAFI-HLA A2402复合物的制备过程如下:The preparation process of above-mentioned VFSTVPPAFI-HLA A2402 complex is as follows:

a.纯化a. Purification

收集100ml诱导表达重链或轻链的E.coli菌液,于4℃8000g离心10min后用10mlPBS洗涤菌体一次,之后用5ml BugBuster Master Mix Extraction Reagents(Merck)剧烈震荡重悬菌体,并于室温旋转孵育20min,之后于4℃,6000g离心15min,弃去上清,收集包涵体。Collect 100ml of E.coli bacteria that induces the expression of heavy or light chains, centrifuge at 8000g at 4°C for 10min, wash the cells once with 10ml PBS, and then use 5ml of BugBuster Master Mix Extraction Reagents (Merck) to vigorously shake the cells to resuspend the cells. Incubate with rotation at room temperature for 20 min, then centrifuge at 6000g for 15 min at 4°C, discard the supernatant, and collect the inclusion bodies.

将上述包涵体重悬于5ml BugBuster Master Mix中,室温旋转孵育5min;加30ml稀释10倍的BugBuster,混匀,4℃6000g离心15min;弃去上清,加30ml稀释10倍的BugBuster重悬包涵体,混匀,4℃6000g离心15min,重复两次,加30ml 20mMTris-HCl pH 8.0重悬包涵体,混匀,4℃6000g离心15min,最后用20mMTris-HCl 8M尿素溶解包涵体,SDS-PAGE检测包涵体纯度,BCA试剂盒测浓度。Resuspend the above inclusions in 5ml of BugBuster Master Mix, and incubate at room temperature for 5min; add 30ml of BugBuster diluted 10 times, mix well, and centrifuge at 6000g at 4°C for 15min; discard the supernatant and add 30ml of BugBuster diluted 10 times to resuspend the inclusion bodies , mix well, centrifuge at 6000g at 4°C for 15min, repeat twice, add 30ml of 20mM Tris-HCl pH 8.0 to resuspend the inclusion bodies, mix well, centrifuge at 6000g at 4°C for 15min, and finally dissolve the inclusion bodies with 20mM Tris-HCl 8M urea, and detect by SDS-PAGE The purity of inclusion bodies was measured by BCA kit.

b.复性b. Refolding

将合成的短肽VFSTVPPAFI(北京赛百盛基因技术有限公司)溶解于DMSO至20mg/ml的浓度。轻链和重链的包涵体用8M尿素、20mMTris pH 8.0、10mM DTT来溶解,复性前加入3M盐酸胍、10mM醋酸钠、10mM EDTA进一步变性。将VFSTVPPAFI肽以25mg/L(终浓度)加入复性缓冲液(0.4M L-精氨酸、100mMTris pH 8.3、2mM EDTA、0.5mM氧化性谷胱甘肽、5mM还原型谷胱甘肽、0.2mM PMSF,冷却至4℃),然后依次加入20mg/L的轻链和90mg/L的重链(终浓度,重链分三次加入,8h/次),复性在4℃进行至少3天至完成,SDS-PAGE检测能否复性成功。The synthetic short peptide VFSTVPPAFI (Beijing Saibaisheng Gene Technology Co., Ltd.) was dissolved in DMSO to a concentration of 20 mg/ml. The inclusion bodies of light and heavy chains were solubilized with 8M urea, 20mM Tris pH 8.0, 10mM DTT, and further denatured by adding 3M guanidine hydrochloride, 10mM sodium acetate, 10mM EDTA before renaturation. VFSTVPPAFI peptide was added at 25 mg/L (final concentration) to renaturation buffer (0.4 M L-arginine, 100 mM Tris pH 8.3, 2 mM EDTA, 0.5 mM oxidized glutathione, 5 mM reduced glutathione, 0.2 mM PMSF, cooled to 4°C), then 20mg/L light chain and 90mg/L heavy chain were added sequentially (final concentration, heavy chain was added in three times, 8h/time), and renaturation was carried out at 4°C for at least 3 days to After completion, SDS-PAGE can detect whether the renaturation is successful.

c.复性后纯化c. Purification after renaturation

用10体积的20mMTris pH 8.0作透析来更换复性缓冲液,至少更换缓冲液两次来充分降低溶液的离子强度。透析后用0.45m醋酸纤维素滤膜过滤蛋白质溶液,然后加载到HiTrap Q HP(GE通用电气公司)阴离子交换柱上(5ml床体积)。利用Akta纯化仪(GE通用电气公司),20mMTris pH 8.0配制的0-400mMNaCl线性梯度液洗脱蛋白,pMHC约在250mMNaCl处洗脱,收集诸峰组分,SDS-PAGE检测纯度。The renaturation buffer was exchanged by dialysis against 10 volumes of 20 mM Tris pH 8.0 at least twice to sufficiently reduce the ionic strength of the solution. After dialysis, the protein solution was filtered through a 0.45 m cellulose acetate filter and loaded onto a HiTrap Q HP (GE) anion exchange column (5 ml bed volume). The protein was eluted with Akta purifier (GE), 0-400 mM NaCl linear gradient prepared with 20 mM Tris pH 8.0, pMHC was eluted at about 250 mM NaCl, the peak fractions were collected, and the purity was checked by SDS-PAGE.

d.生物素化d. Biotinylation

用Millipore超滤管将纯化的pMHC分子浓缩,同时将缓冲液置换为20mMTris pH8.0,然后加入生物素化试剂0.05M Bicine pH 8.3、10mM ATP、10mMMgOAc、50μM D-Biotin、100μg/ml BirA酶(GST-BirA),室温孵育混合物过夜,SDS-PAGE检测生物素化是否完全。Purified pMHC molecules were concentrated with Millipore ultrafiltration tubes while buffer exchanged to 20 mM Tris pH 8.0, followed by addition of biotinylation reagents 0.05 M Bicine pH 8.3, 10 mM ATP, 10 mM MgOAc, 50 μM D-Biotin, 100 μg/ml BirA enzyme (GST-BirA), the mixture was incubated overnight at room temperature, and the complete biotinylation was checked by SDS-PAGE.

e.纯化生物素化后的复合物e. Purification of biotinylated complexes

用Millipore超滤管将生物素化标记后的pMHC分子浓缩至1ml,采用凝胶过滤层析纯化生物素化的pMHC,利用Akta纯化仪(GE通用电气公司),用过滤过的PBS预平衡HiPrepTM16/60 S200 HR柱(GE通用电气公司),加载1ml浓缩过的生物素化pMHC分子,然后用PBS以1ml/min流速洗脱。生物素化的pMHC分子在约55ml时作为单峰洗脱出现。合并含有蛋白质的组分,用Millipore超滤管浓缩,BCA法(Thermo)测定蛋白质浓度,加入蛋白酶抑制剂cocktail(Roche)将生物素化的pMHC分子分装保存在-80℃。The biotinylated pMHC molecules were concentrated to 1 ml with a Millipore ultrafiltration tube, and the biotinylated pMHC was purified by gel filtration chromatography. HiPrepTM16 was pre-equilibrated with filtered PBS using an Akta purifier (GE). /60 S200 HR column (GE), loaded with 1 ml of concentrated biotinylated pMHC molecules, and eluted with PBS at a flow rate of 1 ml/min. Biotinylated pMHC molecules eluted as a single peak at about 55 ml. The fractions containing protein were combined, concentrated with Millipore ultrafiltration tube, the protein concentration was determined by BCA method (Thermo), and the protease inhibitor cocktail (Roche) was added to store the biotinylated pMHC molecules in aliquots at -80°C.

利用BIAcore Evaluation软件计算动力学参数,得到本发明可溶性的TCR分子与复合物结合的动力学图谱如图7所示。Using the BIAcore Evaluation software to calculate the kinetic parameters, the kinetic diagram of the binding of the soluble TCR molecule of the present invention to the complex is obtained as shown in Figure 7 .

实施例5 T细胞受体慢病毒包装与原代T细胞转染SAGE1 TCRExample 5 T cell receptor lentiviral packaging and primary T cell transfection with SAGE1 TCR

(a)通过293T/17细胞的快速介导瞬时转染(Express-In-mediated transienttransfection)制备慢病毒(a) Preparation of lentivirus by Express-In-mediated transient transfection of 293T/17 cells

利用第三代慢病毒包装系统包装含有编码所需TCR的基因的慢病毒。利用快速介导瞬时转染(Express-In-mediated transient transfection)(开放生物系统公司(OpenBiosystems))用4种质粒(含有实施例2所述pLenti-SAGE1TRA-2A-TRB-IRES-NGFR的一种慢病毒载体,以及含有构建传染性但非复制型慢病毒颗粒所必需的其他组分的3种质粒)转染293T/17细胞。Lentiviruses containing the genes encoding the desired TCRs were packaged using a third-generation lentiviral packaging system. Four plasmids (containing one of the pLenti-SAGE1TRA-2A-TRB-IRES-NGFR described in Example 2) were used using Express-In-mediated transient transfection (OpenBiosystems). 293T/17 cells were transfected with lentiviral vectors, and 3 plasmids containing other components necessary to construct infectious but non-replicative lentiviral particles).

为进行转染,第0天种细胞,在15厘米培养皿,种上1.7×107个293T/17细胞,使细胞均匀分布在培养皿上,汇合度略高于50%。第1天转染质粒,包装pLenti-SAGE1TRA-2A-TRB-IRES-NGFR和pLenti-eGFP假病毒,将以上表达质粒与包装质粒pMDLg/pRRE,pRSV-REV和pMD.2G混匀,一个15厘米直径平皿的用量如下:22.5微克∶15微克∶15微克∶7.5微克。转染试剂PEI-MAX与质粒的比例是2∶1,每个平皿的使用量为114.75微克。具体操作为:把表达质粒与包装质粒加入1800微升OPTI-MEM((吉布可公司(Gibco),目录号31985-070)培养基中混合均匀,室温静置5分钟成为DNA混合液;取相应量PEI与1800微升OPTI-MEM培养基混合均匀,室温静置5分钟成为PEI混合液。把DNA混合液和PEI混合液混合在一起并在室温静置30分钟,再添加3150微升OPTI-MEM培养基,混合均匀后加入到已经转换成11.25毫升OPTI-MEM的293T/17细胞中,轻轻晃动培养皿,使培养基混合均匀,37℃/5%CO2下培养。转染5-7小时,去除转染培养基,换成含有10%胎牛血清的DMEM((吉布可公司(Gibco),目录号C11995500bt))完全培养基,37℃/5%CO2下培养。第3和第4天收集含有包装的慢病毒的培养基上清。为收获包装的慢病毒,把所收集到的培养上清3000g离心15分钟去除细胞碎片,再经0.22微米过滤器(默克密理博(Merck Millipore),目录号SLGP033RB)过滤,最后用50KD截留量的浓缩管(默克密理博(Merck Millipore),目录号UFC905096)进行浓缩,除去大部分上清液,最后浓缩到1毫升,等份分装后-80℃冻存。取假病毒样品进行病毒滴度测定,步骤参照p24 ELISA(Clontech,目录号632200)试剂盒说明书。作为对照用,同时也包转pLenti-eGFP的假病毒。For transfection, cells were seeded on day 0 by seeding 1.7 x 107 293T/ 17 cells in a 15 cm dish so that the cells were evenly distributed on the dish and slightly more than 50% confluent. On day 1, transfect the plasmids, package pLenti-SAGE1TRA-2A-TRB-IRES-NGFR and pLenti-eGFP pseudoviruses, mix the above expression plasmids with the packaging plasmids pMDLg/pRRE, pRSV-REV and pMD.2G, each 15 cm The amount used for the diameter plate is as follows: 22.5 micrograms: 15 micrograms: 15 micrograms: 7.5 micrograms. The ratio of transfection reagent PEI-MAX to plasmid was 2:1, and the amount used per plate was 114.75 micrograms. The specific operation is as follows: add the expression plasmid and the packaging plasmid into 1800 microliters of OPTI-MEM ((Gibco, catalog number 31985-070) medium, mix well, and let stand for 5 minutes at room temperature to become a DNA mixture; The corresponding amount of PEI was mixed with 1800 microliters of OPTI-MEM medium, and stood for 5 minutes at room temperature to become the PEI mixture. The DNA mixture and the PEI mixture were mixed together and allowed to stand at room temperature for 30 minutes, and then 3150 microliters of OPTI was added. -MEM medium, mix well and add to 293T/17 cells that have been converted into 11.25 ml OPTI-MEM, shake the dish gently to mix the medium well, and culture at 37°C/5% CO 2. Transfection 5 -7 hours, remove the transfection medium and replace it with DMEM ((Gibco, cat. no. C11995500bt)) complete medium containing 10% fetal bovine serum, and cultivate at 37°C/5% CO2 . The culture supernatants containing the packaged lentiviruses were collected on days 3 and 4. To harvest the packaged lentiviruses, the collected culture supernatants were centrifuged at 3000 g for 15 minutes to remove cell debris, and then passed through a 0.22 micron filter (Merckmidt Libo (Merck Millipore, cat. no. SLGP033RB) was filtered, and finally concentrated with a 50KD cut-off concentrator tube (Merck Millipore, cat. no. UFC905096) to remove most of the supernatant, and finally concentrated to 1 ml, After the aliquots were packaged and frozen at -80 °C .

(b)用含有SAGE1特异性T细胞受体基因的慢病毒转导原代T细胞(b) Transduction of primary T cells with lentiviruses containing the SAGE1-specific T cell receptor gene

从健康志愿者的血液中分离到CD8+T细胞,再用包装的慢病毒转导。计数这些细胞,在48孔板中,在含有50IU/ml IL-2和10ng/ml IL-7的含10%FBS(吉布可公司(Gibco),目录号C10010500BT)的1640(吉布可公司(Gibco),目录号C11875500bt)培养基中以1×106个细胞/毫升(0.5毫升/孔)与预洗涤的抗CD3/CD28抗体-包被小珠(T细胞扩增物,lifetechnologies,目录号11452D)共孵育过夜刺激,细胞∶珠=3∶1。CD8 + T cells were isolated from the blood of healthy volunteers and transduced with packaged lentivirus. These cells were counted in 48-well plates in 1640 (Gibco, Inc.) containing 50 IU/ml IL-2 and 10 ng/ml IL-7 in 10% FBS (Gibco, Cat. No. C10010500BT). (Gibco), cat. no. C11875500bt) medium at 1 x 106 cells/ml (0.5 ml/well) with pre-washed anti-CD3/CD28 antibody-coated beads (T cell amplicon, lifetechnologies, catalogue No. 11452D) co-incubation overnight stimulation, cells:beads=3:1.

刺激过夜后,根据p24 ELISA试剂盒所测到的病毒滴度,按MOI=10的比例加入已浓缩的SAGE1特异性T细胞受体基因的慢病毒,32℃,900g离心感染1小时。感染完毕后去除慢病毒感染液,用加入50IU/ml IL-2和10ng/ml IL-7的含10%FBS的1640培养基重悬细胞,37℃/5%CO2下培养3天。转导3天后计数细胞,稀释细胞至0.5×106个细胞/毫升。每两天计数一次细胞,替换或加入含有50IU/ml IL-2和10ng/ml IL-7的新鲜培养基,维持细胞在0.5×106-1×106个细胞/毫升。从第3天开始通过流式细胞术分析细胞,从第5天开始用于功能试验(例如,IFN-γ释放的ELISPOT和非放射性细胞毒性检测)。从第10天开始或在细胞减缓分裂和尺寸变小之时,冷冻储存等分细胞,至少4×106个细胞/管(1×107个细胞/毫升,90%FBS/10%DMSO)。After overnight stimulation, according to the virus titer detected by the p24 ELISA kit, the concentrated SAGE1-specific T cell receptor gene lentivirus was added at the ratio of MOI=10, and the cells were centrifuged at 32°C and 900g for 1 hour. After infection, the lentivirus infection solution was removed, and the cells were resuspended in 1640 medium containing 10% FBS with 50IU/ml IL-2 and 10ng/ml IL-7 added, and cultured at 37°C/5% CO 2 for 3 days. Cells were counted 3 days after transduction and diluted to 0.5 x 106 cells/ml. Count cells every two days and replace or add fresh medium containing 50 IU/ml IL-2 and 10 ng/ml IL-7 to maintain cells at 0.5 x 10 6 -1 x 10 6 cells/ml. Cells were analyzed by flow cytometry from day 3 and used for functional assays (eg, ELISPOT of IFN-γ release and non-radioactive cytotoxicity assays) from day 5. From day 10 onwards or as cells slow down and shrink in size, store aliquots frozen, at least 4 x 10 cells/tube (1 x 10 cells/ml, 90% FBS/10% DMSO) .

(c)四聚体染色TCR转导的原代T细胞(c) Tetramer stained TCR-transduced primary T cells

SAGE1 PX149 597-606 VFSTVPPAFI短肽与带有生物素标记的HLA-A*2402复性,制备pHLA单聚体。这些单聚体用PE标记的链霉亲和素(BD)组合成PE标记的四聚体,称为PX149-tetramer-PE。此四聚体能把表达了SAGE1特异性T细胞受体基因的T细胞标记为阳性细胞。把(b)中经转导的T细胞样品与PX149-tetramer-PE混合在冰上孵育30分钟,然后加入抗小鼠β链-APC抗体,继续冰上孵育15分钟。样品用含有2%FBS的PBS清洗2次后用BDCalibur或BD Arial检测或分选表达了SAGE1特异性T细胞受体基因的PX149-tetramer-PE和抗小鼠β链-APC双阳性的T细胞,数据分析采用CellQuest软件(BD)或者FlowJo软件(TreeStar Inc,Ashland,OR)分析。SAGE1 PX149 597-606 VFSTVPPAFI short peptide was renatured with biotin-labeled HLA-A*2402 to prepare pHLA monomer. These monomers were combined with PE-labeled streptavidin (BD) to form a PE-labeled tetramer, termed PX149-tetramer-PE. This tetramer can label T cells expressing the SAGE1-specific T cell receptor gene as positive cells. The transduced T cell samples in (b) were mixed with PX149-tetramer-PE and incubated on ice for 30 minutes, then anti-mouse beta chain-APC antibody was added and the incubation continued on ice for 15 minutes. Samples were washed twice with PBS containing 2% FBS, and then BDCalibur or BD Arial were used to detect or sort T cells that express SAGE1-specific T cell receptor gene PX149-tetramer-PE and anti-mouse β-chain-APC double-positive T cells , data analysis using CellQuest software (BD) or FlowJo software (TreeStar Inc, Ashland, OR) analysis.

经检测分析,结果如图8所示,用PX149-tetramer-PE和抗小鼠β链-APC抗体染色后,未经TCR慢病毒感染的空白对照组T细胞无PX149-tetramer-PE和抗小鼠β链-APC双阳性细胞,而经TCR慢病毒感染的T细胞出现表达TCR的PX149-tetramer-PE和抗小鼠β链-APC双阳性细胞,当用非PX149-tetramer-PE的其他tetramer-PE染色时只有极少量非特异性的双阳性细胞。After detection and analysis, the results are shown in Figure 8. After staining with PX149-tetramer-PE and anti-mouse β-chain-APC antibodies, the blank control group T cells without TCR lentivirus infection did not have PX149-tetramer-PE and anti-small cells. Murine β-chain-APC double-positive cells, while TCR lentivirus-infected T cells appeared to express TCR-expressing PX149-tetramer-PE and anti-mouse β-chain-APC double-positive cells, when treated with other tetramers other than PX149-tetramer-PE - Very few non-specific double positive cells on PE staining.

实施例6 转导本发明TCR的效应细胞的激活实验Example 6 Activation experiment of effector cells transduced with TCR of the present invention

ELISPOT方案ELISPOT solution

进行以下试验以证明TCR-转导的T细胞对靶细胞特异性地起反应的激活。利用ELISPOT试验检测的IFN-γ产量作为T细胞激活的读出值。The following experiments were performed to demonstrate activation of TCR-transduced T cells specifically responsive to target cells. IFN-γ production detected using the ELISPOT assay was used as a readout for T cell activation.

试剂reagent

试验培养基:10%FBS(吉布可公司(Gibco),目录号16000-044),RPMI1640(吉布可公司(Gibco),目录号C11875500bt)Assay medium: 10% FBS (Gibco, cat. no. 16000-044), RPMI1640 (Gibco, cat. no. C11875500bt)

洗涤缓冲液:0.01M PBS/0.05%吐温20Washing buffer: 0.01M PBS/0.05% Tween 20

PBS(吉布可公司(Gibco),目录号C10010500BT)PBS (Gibco, catalog number C10010500BT )

PVDF ELISPOT 96孔板(默克密理博(Merck Millipore),目录号MSIPS4510)PVDF ELISPOT 96-well plate (Merck Millipore, catalog number MSIPS4510 )

人IFN-γELISPOT PVDF-酶试剂盒(BD)装有所需的所有其他试剂(捕捉和检测抗体,链霉亲和素-碱性磷酸酶和BCIP/NBT溶液)Human IFN-γ ELISPOT PVDF-enzyme kit (BD) contains all other reagents required (capture and detection antibodies, streptavidin-alkaline phosphatase and BCIP/NBT solution)

方法method

靶细胞制备target cell preparation

本实施例的靶细胞为Epstein-Barr病毒(EBV)转化的永生化淋巴母细胞系(LCLs)。B95-8细胞经十四酰乙酸佛波醇酯(TPA)诱导生产含有EBV的培养基上清,4℃/600g离心10分钟去除杂质,然后过0.22微米过滤器,等分分装-70℃保存。从基因型为HLA-A11/A02/A24(包括纯合子和杂合子)的健康志愿者的外周血淋巴细胞(PBL),取10毫升浓度为2×107/毫升的PBL悬浮液于25平方厘米的培养瓶中,加入环孢霉素后在37℃/CO2培养箱中孵育1小时,快速解冻一份EBV,按1/10稀释加入到上述细胞中,轻轻摇匀并把培养瓶直立置于37℃/CO2培养箱中培养。培养12天后添加10毫升培养基继续培养,约30天后进一步扩大培养并进行流式检测,其中CD19+CD23hiCD58+为永生化淋巴母细胞系(LCLs)。本ELISPOT试验以HLA-A24为特异性靶细胞。The target cells in this example were immortalized lymphoblastoid cell lines (LCLs) transformed with Epstein-Barr virus (EBV). B95-8 cells were induced by phorbol myristate acetate (TPA) to produce medium supernatant containing EBV, centrifuged at 4°C/600g for 10 minutes to remove impurities, then passed through a 0.22 micron filter, and aliquoted at -70°C save. From peripheral blood lymphocytes (PBL) of healthy volunteers with genotype HLA-A11/A02/A24 (both homozygous and heterozygous), take 10 ml of PBL suspension at a concentration of 2 x 10 7 /ml in 25 square centimeter culture flask, incubate for 1 hour in a 37°C/CO 2 incubator after adding cyclosporine, quickly thaw a portion of EBV, add it to the above cells at a 1/10 dilution, shake gently and place the flask Incubate upright in a 37°C/CO 2 incubator. After 12 days of culture, 10 ml of medium was added to continue the culture, and about 30 days later, the culture was further expanded and flow cytometry was performed. Among them, CD19 + CD23 hi CD58 + were immortalized lymphoblastoid cell lines (LCLs). This ELISPOT assay uses HLA-A24 as a specific target cell.

效应细胞制备Effector cell preparation

本试验的效应细胞(T细胞)是实施例3中经流式细胞术分析表达SAGE1特异性TCR的CD8+T细胞,并以同一志愿者的CD8+T作为阴性对照效应细胞。用抗CD3/CD28包被珠(T细胞扩增物,LifeTechnologies)刺激T细胞,用携带SAGE1特异性TCR基因的慢病毒转导(依据实施例3),在含有50IU/ml IL-2和10ng/ml IL-7的含10%FBS的1640培养基扩增直至转导后9-12天,然后将这些细胞置于试验培养基中,300g常温离心10分钟进行洗涤。然后将细胞以2×所需终浓度重悬在试验培养基中。同样处理阴性对照效应细胞。The effector cells (T cells) in this experiment were the CD8 + T cells expressing SAGE1-specific TCR by flow cytometry analysis in Example 3, and the CD8 + T cells of the same volunteer were used as negative control effector cells. T cells were stimulated with anti-CD3/CD28-coated beads (T Cell Amplifier, LifeTechnologies), transduced with lentiviruses carrying SAGE1-specific TCR genes (according to Example 3), in cells containing 50 IU/ml IL-2 and 10 ng /ml IL-7 in 1640 medium with 10% FBS was expanded until 9-12 days after transduction, then the cells were placed in assay medium and washed by centrifugation at 300 g for 10 minutes at room temperature. Cells were then resuspended in assay medium at 2x the desired final concentration. Negative control effector cells were treated similarly.

ELISPOTELISPOT

按照生产商提供的说明书,如下所述准备孔板:以每块板10毫升无菌PBS按1∶200稀释抗人IFN-γ捕捉抗体,然后将100微升的稀释捕捉抗体等分加入各孔。4℃下孵育孔板过夜。孵育后,洗涤孔板以除去多余的捕捉抗体。加入100微升/孔含有10%FBS的RPMI 1640培养基并在室温下温育孔板2小时以封闭孔板。然后从孔板中洗去培养基,通过在纸上轻弹和轻拍ELISPOT孔板以除去任何残余的洗涤缓冲液。Following the manufacturer's instructions, prepare the well plates as follows: Dilute the anti-human IFN-γ capture antibody 1:200 in 10 mL of sterile PBS per plate, then aliquot 100 microliters of the diluted capture antibody into each well . Plates were incubated overnight at 4°C. After incubation, the plate was washed to remove excess capture antibody. 100 microliters/well of RPMI 1640 medium containing 10% FBS was added and the wells were incubated for 2 hours at room temperature to block the wells. The medium was then washed from the well plate and any residual wash buffer was removed by flicking and tapping the ELISPOT well plate on the paper.

SAGE1 CD8+T细胞(SAGE1 TCR转导的T细胞,效应细胞VF3 CD8+ T细胞)、CD8+ T细胞(阴性对照效应细胞)和LCL-A24/A02(靶细胞)依据实施例3所述制备,并在相应实验组加入对应短肽,其中PX149为SAGE1 PX149 597-606 VFSTVPPAFI短肽,PA11、PA02、PA24-1、PA24-2和PA24-3为非SAGE1TCR特异结合短肽。SAGE1 CD8 + T cells (SAGE1 TCR-transduced T cells, effector cells VF3 CD8+ T cells), CD8+ T cells (negative control effector cells), and LCL-A24/A02 (target cells) were prepared as described in Example 3, and Corresponding short peptides were added to the corresponding experimental groups, wherein PX149 was SAGE1 PX149 597-606 VFSTVPPAFI short peptide, and PA11, PA02, PA24-1, PA24-2 and PA24-3 were non-SAGE1 TCR specific binding short peptides.

然后采用以下顺序将试验的诸组分加入ELISPOT孔板:The components of the assay were then added to the ELISPOT plate in the following order:

130微升靶细胞77000个细胞/毫升(得到总共约10000个靶细胞/孔)。130 microliters of target cells 77000 cells/ml (resulting in a total of about 10000 target cells/well).

50微升效应细胞(1000个SAGE1 TCR双阳性T细胞)。50 microliters of effector cells (1000 SAGE1 TCR double positive T cells).

20微升10-5摩尔/升的SAGE1 PX149 597-606 VFSTVPPAFI/非特异性短肽溶液(终浓度为10-6摩尔/升)。20 microliters of 10-5 mol/liter SAGE1 PX149 597-606 VFSTVPPAFI/non-specific short peptide solution (final concentration 10-6 mol/liter).

所有孔一式三份制备添加。All wells were prepared for addition in triplicate.

然后温育孔板过夜(37℃/5%CO2)第二天,弃培养基,用双蒸水洗涤孔板2次,再用洗涤缓冲液洗涤3次,在纸巾上轻拍以除去残余的洗涤缓冲液。然后用含有10%FBS的PBS稀释检测一抗,按100微升/孔加入各孔。室温下温育孔板2小时,再用洗涤缓冲液洗涤3次,在纸巾上轻拍孔板以除去过量的洗涤缓冲液。Plates were then incubated overnight (37°C/5% CO 2 ). The next day, the medium was discarded and the plates were washed 2 times with double distilled water and 3 times with wash buffer and tapped on a paper towel to remove residues washing buffer. The primary detection antibody was then diluted in PBS containing 10% FBS and added to each well at 100 microliters/well. Plates were incubated for 2 hours at room temperature and washed 3 times with wash buffer. Excess wash buffer was removed by tapping the plate on a paper towel.

用含有10%FBS的PBS按1∶100稀释链霉亲和素-碱性磷酸酶,将100微升稀释的链霉亲和素-碱性磷酸酶加入各孔并在室温下温育孔板1小时。然后用洗涤缓冲液洗涤3次PBS洗涤2次,在纸巾上轻拍孔板以除去过量的洗涤缓冲液和PBS。洗涤完毕后加入试剂盒提供的BCIP/NBT溶液100微升/孔进行显影。在显影期间用锡箔纸覆盖孔板避光,静置5-15分钟。在此期间常规检测显影孔板的斑点,确定终止反应的最佳时间。去除BCIP/NBT溶液并用双蒸水冲洗孔板以中止显影反应,甩干,然后将孔板底部去除,在室温下干燥孔板直至每个孔完全干燥,再利用免疫斑点平板计数计(CTL,细胞技术有限公司(Cellular TechnologyLimited))计数孔板内底膜形成的斑点。Streptavidin-alkaline phosphatase was diluted 1:100 in PBS containing 10% FBS, 100 microliters of diluted streptavidin-alkaline phosphatase was added to each well and the plate was incubated at room temperature 1 hour. Then wash 3 times with wash buffer 2 times with PBS and tap the plate on a paper towel to remove excess wash buffer and PBS. After washing, 100 μl/well of BCIP/NBT solution provided by the kit was added for development. Cover the well plate with foil during development to protect from light and let stand for 5-15 minutes. Routinely check the spots of the developing plate during this period to determine the optimal time to terminate the reaction. Remove the BCIP/NBT solution and rinse the well plate with double distilled water to stop the development reaction, spin dry, then remove the bottom of the well plate, dry the well plate at room temperature until each well is completely dry, and then use an immunospot plate counter (CTL, Cellular Technology Limited) counted the spots formed by the bottom membrane in the well plate.

结果result

通过ELISPOT试验(如上所述)检验本发明TCR转导的T细胞对负载SAGE1 PX149597-606 VFSTVPPAFI短肽的靶细胞和非特异性短肽的靶细胞起反应的IFN-γ释放。利用graphpad prism6绘制各孔中观察到的ELSPOT斑点数量。The TCR-transduced T cells of the invention were examined for IFN-γ release in response to SAGE1 PX149597-606 VFSTVPPAFI short peptide-loaded target cells and non-specific short peptide target cells by the ELISPOT assay (described above). The number of ELSPOT spots observed in each well was plotted using GraphPad Prism6.

实验结果如图9所示,转导本发明TCR的CD8+T细胞对负载相关短肽的LCLs有很强的激活作用,释放出较多IFN-γ,而对负载非特异短肽的LCLs基本没有反应;同时,未转导本发明TCR的CD8+T细胞对负载相关短肽的LCLs反应很小,仅有少量IFN-γ释放。The experimental results are shown in Figure 9. The CD8 + T cells transduced with the TCR of the present invention have a strong activation effect on LCLs loaded with related short peptides, and release more IFN-γ, while the LCLs loaded with non-specific short peptides basically have a strong activation effect. There was no response; meanwhile, CD8 + T cells that were not transduced with the TCR of the present invention had little response to LCLs loaded with relevant short peptides, and only a small amount of IFN-γ was released.

实施例7 非放射性细胞毒性试验方案Example 7 Non-radioactive cytotoxicity test protocol

该试验是51Cr释放细胞毒性试验的比色替代试验,定量测定细胞裂解后释放的乳酸脱氢酶(LDH)。采用30分钟偶联的酶反应来检测释放在培养基中的LDH,在酶反应中LDH可使一种四唑盐(INT)转化为红色的甲臜(formazan)。生成的红色产物的量与裂解的细胞数成正比。可以用标准的96孔读板计收集490nm可见光吸光值数据。This assay is a colorimetric alternative to the 51Cr release cytotoxicity assay and quantifies lactate dehydrogenase (LDH) released after cell lysis. LDH released in the medium was detected using a 30 min coupled enzymatic reaction in which LDH converts a tetrazolium salt (INT) to red formazan. The amount of red product produced is proportional to the number of cells lysed. Visible absorbance data at 490 nm can be collected using a standard 96-well plate reader.

材料Material

CytoTox

Figure GPA0000265729970000171
非放射性细胞毒性检测(普罗迈格公司,G1780)含有底物混合物、试验缓冲液、裂解溶液和终止缓冲液。CytoTox
Figure GPA0000265729970000171
The nonradioactive cytotoxicity assay (Promega, G1780) contains substrate mix, assay buffer, lysis solution, and stop buffer.

试验培养基:10%FBS(热灭活的,吉布可公司,目录号16000-044),含酚红的90%RPMI 1640(吉布可公司(Gibco),目录号C11875500bt),1%青霉素/链霉素(吉布可公司,目录号15070-063)。Assay medium: 10% FBS (heat-inactivated, Gibco, cat. no. 16000-044), 90% RPMI 1640 with phenol red (Gibco, cat. no. C11875500bt), 1% penicillin /Streptomycin (Gibco, Cat. No. 15070-063).

微孔圆底96孔组织培养板(纽克公司(Nunc),目录号163320)Microwell round bottom 96-well tissue culture plate (Nunc, catalog number 163320 )

96孔免疫平板Maxisorb(纽克公司(Nunc),目录号442404)96-well immunoplate Maxisorb (Nunc, catalog number 442404 )

方法method

靶细胞制备target cell preparation

本试验采用K562-A24,NCI-H1299-A24和IM 9三株肿瘤细胞系为靶细胞。在试验培养基中制备靶细胞:靶细胞浓度调至334个/毫升,每孔取45微升从而得1.5×104个细胞/孔。Three tumor cell lines, K562-A24, NCI-H1299-A24 and IM 9, were used as target cells in this experiment. Prepare target cells in assay medium: adjust the target cell concentration to 334 cells/ml and take 45 microliters per well to obtain 1.5 x 104 cells/well.

效应细胞制备Effector cell preparation

本试验的效应细胞(T细胞)是实施例3中经流式细胞术分析表达SAGE1特异性TCR的CD8+T细胞。效应细胞与靶细胞之比采用10∶1.、5∶1、2.5∶1、1.25∶1和0.625∶1。设同源CD8+T细胞加靶细胞对照组(10∶1)。The effector cells (T cells) in this experiment were CD8 + T cells expressing SAGE1-specific TCR by flow cytometry analysis in Example 3. The ratios of effector cells to target cells were used at 10:1., 5:1, 2.5:1, 1.25:1 and 0.625:1. A control group (10:1) of syngeneic CD8 + T cells plus target cells was set.

SAGE1特异性TCR转导的CD8+T细胞特异性杀伤肿瘤细胞试验CD8 + T cell-specific killing of tumor cells by SAGE1-specific TCR transduction

试验准备Test preparation

采用以下顺序将试验的诸组分加入微孔圆底96孔组织培养板:The components of the assay were added to a microwell round bottom 96-well tissue culture plate in the following order:

-45ul靶细胞(如上所述制备)加入各孔-45ul target cells (prepared as described above) were added to each well

-45ul效应细胞(如上所述制备)加入各孔- 45ul effector cells (prepared as described above) were added to each well

如下所述制备对照组:A control group was prepared as follows:

-效应细胞自发释放:仅有45ul效应细胞。- Spontaneous release of effector cells: only 45ul of effector cells.

-靶细胞自发释放:仅有45ul靶细胞。- Spontaneous release of target cells: only 45ul of target cells.

-靶细胞最大释放:仅有45ul靶细胞。- Maximum release of target cells: only 45ul of target cells.

-培养基对照:仅有90ul培养基。- Medium control: 90ul of medium only.

所有孔一式三份制备,终体积为90ul(不够的用培养基补足)。All wells were prepared in triplicate with a final volume of 90ul (not enough was made up with medium).

37℃温育24小时。收集所有孔上清前,将靶细胞最大释放对照孔在-70℃放置细胞大约30分钟,再在37℃融化15分钟,以使靶细胞全部裂解。Incubate for 24 hours at 37°C. Before collecting the supernatant from all wells, the target cell maximum release control wells were placed at -70°C for approximately 30 minutes and then thawed at 37°C for 15 minutes to completely lyse the target cells.

在250g离心平板4分钟。将试验平板各孔的50ul上清液转移至96孔免疫平板Maxisorb板的相应孔。利用试验缓冲液(12ml)重建底物混合物,然后加50ul至平板各孔。平板盖上盖子后在阴暗处室温温育30分钟。将50ul终止溶液加入平板各孔以终止反应。加入终止溶液后1小时内计数记录490nm的吸光度。Plates were centrifuged at 250g for 4 minutes. Transfer 50 ul of the supernatant from each well of the assay plate to the corresponding well of a 96-well immunoplate Maxisorb plate. The substrate mix was reconstituted with assay buffer (12ml), then 50ul was added to each well of the plate. The plates were covered and incubated at room temperature for 30 minutes in the dark. 50ul of stop solution was added to each well of the plate to stop the reaction. The absorbance at 490 nm was counted within 1 hour after the addition of the stop solution.

计算结果Calculation results

从实验组、靶细胞自发释放组和效应细胞自释放组的所有吸光度值中扣除培养基背景的吸光度值。The absorbance value of the medium background was subtracted from all absorbance values of the experimental group, the spontaneous release group of target cells and the spontaneous release group of effector cells.

将上述中获得的经过校正的值带入下面公式,计算每个效靶比所产生的细胞毒性百分比。The corrected values obtained above were inserted into the formula below to calculate the percent cytotoxicity produced by each effector-to-target ratio.

%细胞毒性=100×(实验-效应细胞自发-靶细胞自发)/(靶细胞最大-靶细胞自发)% Cytotoxicity = 100 x (experimental - effector cell spontaneous - target cell spontaneous) / (target cell maximum - target cell spontaneous)

结果result

通过非放射性细胞毒性检测(如上所述)检验SAGE1 TCR转导的T细胞对特异性靶细胞起反应的LDH释放。利用graphpad prism6绘制各孔中490nm可见光吸光值。SAGE1 TCR-transduced T cells were examined for LDH release in response to specific target cells by a nonradioactive cytotoxicity assay (described above). Absorbance values of visible light at 490 nm in each well were plotted using graphpad prism6.

实验数据统计结果如图10所示,随着效靶比例增加,本发明TCR转导的T细胞对特异性靶细胞K562-24和NCI H1299-A24的杀伤作用增强;对非特异性靶细胞IM 9杀伤作用很弱。未转导本发明TCR的同源CD8+T细胞对靶细胞K562-24无明显杀伤。The statistical results of the experimental data are shown in Figure 10. As the ratio of effector targets increases, the T cells transduced by the TCR of the present invention have enhanced killing effects on specific target cells K562-24 and NCI H1299-A24; on non-specific target cells IM 9 The killing effect is weak. Homologous CD8 + T cells not transduced with the TCR of the present invention did not significantly kill the target cell K562-24.

在本发明提及的所有文献都在本申请中引用作为参考,就如同每一篇文献被单独引用作为参考那样。此外应理解,在阅读了本发明的上述讲授内容之后,本领域技术人员可以对本发明作各种改动或修改,这些等价形式同样落于本申请所附权利要求书所限定的范围。All documents mentioned herein are incorporated by reference in this application as if each document were individually incorporated by reference. In addition, it should be understood that after reading the above teaching content of the present invention, those skilled in the art can make various changes or modifications to the present invention, and these equivalent forms also fall within the scope defined by the appended claims of the present application.

Figure IDA0002042265020000011
Figure IDA0002042265020000011

Figure IDA0002042265020000021
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Figure IDA0002042265020000141
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Figure IDA0002042265020000151
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Claims (29)

1.一种T细胞受体(TCR),其特征在于,所述TCR能够与VFSTVPPAFI-HLA A2402复合物结合;所述的TCR包含TCRα链可变域和TCRβ链可变域,其特征在于,所述TCRα链可变域的3个互补决定区(CDR)为:1. a T cell receptor (TCR) is characterized in that, described TCR can be combined with VFSTVPPAFI-HLA A2402 complex; Described TCR comprises TCRα chain variable domain and TCRβ chain variable domain, it is characterized in that, The three complementarity determining regions (CDRs) of the variable domain of the TCRα chain are: αCDR1-DSAIYN (SEQ ID NO.10)αCDR1-DSAIYN (SEQ ID NO. 10) αCDR2-IQSSQRE (SEQ ID NO.11)αCDR2-IQSSQRE (SEQ ID NO. 11) αCDR3-CAVLYTGANSKLTF (SEQ ID NO.12);和αCDR3-CAVLYTGANSKLTF (SEQ ID NO. 12); and 所述TCRβ链可变域的3个互补决定区为:The three complementarity determining regions of the TCRβ chain variable domain are: βCDR1-SGHDT (SEQ ID NO.13)βCDR1-SGHDT (SEQ ID NO. 13) βCDR2-YYEEEE (SEQ ID NO.14)βCDR2-YYEEEE (SEQ ID NO. 14) βCDR3-CASSLVGKQPQHF (SEQ ID NO.15)。βCDR3-CASSLVGKQPQHF (SEQ ID NO. 15). 2.如权利要求1所述的TCR,其特征在于,其包含TCRα链可变域和TCRβ链可变域,所述TCRα链可变域为与SEQ ID NO.1具有至少90%序列相同性的氨基酸序列;和/或所述TCRβ链可变域为与SEQ ID NO:5具有至少90%序列相同性的氨基酸序列。2. The TCR of claim 1 , comprising a variable domain of a TCRα chain and a variable domain of a TCRβ chain, the variable domain of the TCRα chain having at least 90% sequence identity with SEQ ID NO.1 and/or the TCRβ chain variable domain is an amino acid sequence with at least 90% sequence identity to SEQ ID NO:5. 3.如权利要求1所述的TCR,其特征在于,所述TCR为αβ异质二聚体,其包含TCRα链恒定区TRAC*01和TCRβ链恒定区TRBC1*01或TRBC2*01。3. The TCR of claim 1, wherein the TCR is an αβ heterodimer comprising a TCRα chain constant region TRAC*01 and a TCRβ chain constant region TRBC1*01 or TRBC2*01. 4.如权利要求1所述的TCR,其特征在于,所述TCR的α链氨基酸序列为SEQ ID NO:3和/或所述TCR的β链氨基酸序列为SEQ ID NO.7。4 . The TCR of claim 1 , wherein the amino acid sequence of the α chain of the TCR is SEQ ID NO: 3 and/or the amino acid sequence of the β chain of the TCR is SEQ ID NO. 7. 5 . 5.如权利要求1所述的TCR,其特征在于,所述TCR是可溶的和/或所述TCR为单链。5. The TCR of claim 1, wherein the TCR is soluble and/or the TCR is single-chain. 6.如权利要求1所述的TCR,其特征在于,所述TCR在α链可变区氨基酸第11、13、19、21、53、76、89、91、或第94位,和/或α链J基因短肽氨基酸倒数第3位、倒数第5位或倒数第7位中具有一个或多个突变;和/或所述TCR在β链可变区氨基酸第11、13、19、21、53、76、89、91、或第94位,和/或β链J基因短肽氨基酸倒数第2位、倒数第4位或倒数第6位中具有一个或多个突变,其中氨基酸位置编号按IMGT(国际免疫遗传学信息系统)中列出的位置编号。6. The TCR of claim 1, wherein the TCR is at amino acid position 11, 13, 19, 21, 53, 76, 89, 91, or 94 in the alpha chain variable region, and/or The α-chain J gene short peptide has one or more mutations in the penultimate 3rd, 5th or 7th position of the penultimate amino acid; and/or the TCR is in the β-chain variable region amino acid 11, 13, 19, 21 , 53, 76, 89, 91, or 94, and/or one or more mutations in the penultimate amino acid position 2, 4 or 6 of the β-chain J gene short peptide, wherein the amino acid positions are numbered By position number as listed in IMGT (International Information System for Immunogenetics). 7.如权利要求1所述的TCR,其特征在于,所述TCR包括(a)除跨膜结构域以外的全部或部分TCRα链;以及(b)除跨膜结构域以外的全部或部分TCRβ链;7. The TCR of claim 1, wherein the TCR comprises (a) all or a portion of a TCRα chain other than the transmembrane domain; and (b) all or a portion of a TCRβ except the transmembrane domain chain; 并且(a)和(b)各自包含功能性可变结构域,或包含功能性可变结构域和所述TCR链恒定结构域的至少一部分。And (a) and (b) each comprise a functional variable domain, or comprise a functional variable domain and at least a portion of the TCR chain constant domain. 8.如权利要求1所述的TCR,其特征在于,半胱氨酸残基在所述TCR的α和β链恒定域之间形成人工二硫键。8. The TCR of claim 1, wherein cysteine residues form an artificial disulfide bond between the constant domains of the alpha and beta chains of the TCR. 9.如权利要求8所述的TCR,其特征在于,在所述TCR中形成人工二硫键的半胱氨酸残基取代了选自下列的一组或多组位点:9. The TCR of claim 8, wherein the cysteine residues forming artificial disulfide bonds in the TCR are substituted for one or more groups of sites selected from the group consisting of: TRAC*01外显子1的Thr48和TRBC1*01或TRBC2*01外显子1的Ser57;Thr48 in exon 1 of TRAC*01 and Ser57 in exon 1 of TRBC1*01 or TRBC2*01; TRAC*01外显子1的Thr45和TRBC1*01或TRBC2*01外显子1的Ser77;Thr45 in exon 1 of TRAC*01 and Ser77 in exon 1 of TRBC1*01 or TRBC2*01; TRAC*01外显子1的Tyr10和TRBC1*01或TRBC2*01外显子1的Ser17;Tyr10 of exon 1 of TRAC*01 and Ser17 of exon 1 of TRBC1*01 or TRBC2*01; TRAC*01外显子1的Thr45和TRBC1*01或TRBC2*01外显子1的Asp59;Thr45 of exon 1 of TRAC*01 and Asp59 of exon 1 of TRBC1*01 or TRBC2*01; TRAC*01外显子1的Ser15和TRBC1*01或TRBC2*01外显子1的Glu15;Ser15 of exon 1 of TRAC*01 and Glu15 of exon 1 of TRBC1*01 or TRBC2*01; TRAC*01外显子1的Arg53和TRBC1*01或TRBC2*01外显子1的Ser54;Arg53 in exon 1 of TRAC*01 and Ser54 in exon 1 of TRBC1*01 or TRBC2*01; TRAC*01外显子1的Pro89和TRBC1*01或TRBC2*01外显子1的Ala19;和Pro89 of exon 1 of TRAC*01 and Ala19 of exon 1 of TRBC1*01 or TRBC2*01; and TRAC*01外显子1的Tyr10和TRBC1*01或TRBC2*01外显子1的Glu20。Tyr10 of exon 1 of TRAC*01 and Glu20 of exon 1 of TRBC1*01 or TRBC2*01. 10.如权利要求1所述的TCR,其特征在于,所述TCR的α链氨基酸序列为SEQ ID NO.26和/或所述TCR的β链氨基酸序列为SEQ ID NO.28。10 . The TCR of claim 1 , wherein the amino acid sequence of the α chain of the TCR is SEQ ID NO.26 and/or the amino acid sequence of the β chain of the TCR is SEQ ID NO.28. 11 . 11.如权利要求1所述的TCR,其特征在于,所述TCR的α链可变区与β链恒定区之间含有人工链间二硫键。11. The TCR of claim 1, wherein an artificial interchain disulfide bond is contained between the variable region of the α chain and the constant region of the β chain of the TCR. 12.如权利要求11所述的TCR,其特征在于,其特征在于,在所述TCR中形成人工链间二硫键的半胱氨酸残基取代了选自下列的一组或多组位点:12. The TCR of claim 11 , wherein the cysteine residues forming artificial interchain disulfide bonds in the TCR are substituted for one or more groups selected from the group consisting of point: TRAV的第46位氨基酸和TRBC1*01或TRBC2*01外显子1的第60位氨基酸;Amino acid 46 of TRAV and amino acid 60 of exon 1 of TRBC1*01 or TRBC2*01; TRAV的第47位氨基酸和TRBC1*01或TRBC2*01外显子1的61位氨基酸;Amino acid 47 of TRAV and amino acid 61 of exon 1 of TRBC1*01 or TRBC2*01; TRAV的第46位氨基酸和TRBC1*01或TRBC2*01外显子1的第61位氨基酸;或Amino acid 46 of TRAV and amino acid 61 of exon 1 of TRBC1*01 or TRBC2*01; or TRAV的第47位氨基酸和TRBC1*01或TRBC2*01外显子1的第60位氨基酸。Amino acid 47 of TRAV and amino acid 60 of exon 1 of TRBC1*01 or TRBC2*01. 13.如权利要求1所述的TCR,其特征在于,所述TCR包含α链可变域和β链可变域以及除跨膜结构域以外的全部或部分β链恒定域,但其不包含α链恒定域,所述TCR的α链可变域与β链形成异质二聚体。13. The TCR of claim 1, wherein the TCR comprises an alpha chain variable domain and a beta chain variable domain and all or part of the beta chain constant domain except the transmembrane domain, but does not contain The alpha chain constant domain, the alpha chain variable domain of the TCR forms a heterodimer with the beta chain. 14.如权利要求1所述的TCR,其特征在于,所述TCR的α链和/或β链的C-或N-末端结合有偶联物。14. The TCR of claim 1, wherein a conjugate is bound to the C- or N-terminus of the alpha chain and/or beta chain of the TCR. 15.如权利要求14所述的TCR,其特征在于,与所述T细胞受体结合的偶联物为可检测标记物、治疗剂、PK修饰部分或任何这些物质的组合。15. The TCR of claim 14, wherein the conjugate bound to the T cell receptor is a detectable label, a therapeutic agent, a PK modifying moiety, or a combination of any of these. 16.如权利要求15所述的TCR,其特征在于,所述治疗剂为抗-CD3抗体。16. The TCR of claim 15, wherein the therapeutic agent is an anti-CD3 antibody. 17.一种多价TCR复合物,其特征在于,包含至少两个TCR分子,并且其中的至少一个TCR分子为权利要求1-16中任一项所述的TCR。17. A multivalent TCR complex, comprising at least two TCR molecules, and at least one of the TCR molecules is the TCR of any one of claims 1-16. 18.一种核酸分子,其特征在于,所述核酸分子包含编码权利要求1-16中任一项所述的TCR的核酸序列或其互补序列。18. A nucleic acid molecule, characterized in that the nucleic acid molecule comprises a nucleic acid sequence encoding the TCR of any one of claims 1-16 or a complementary sequence thereof. 19.如权利要求18所述的核酸分子,其特征在于,所述的核酸分子包含编码TCRα链可变域的核苷酸序列SEQ ID NO:2;和19. The nucleic acid molecule of claim 18, wherein the nucleic acid molecule comprises the nucleotide sequence of SEQ ID NO: 2 encoding the variable domain of the TCRα chain; and 所述的核酸分子包含编码TCRβ链可变域的核苷酸序列SEQ ID NO:6。The nucleic acid molecule comprises the nucleotide sequence SEQ ID NO:6 encoding the variable domain of the TCR beta chain. 20.如权利要求18所述的核酸分子,其特征在于,所述核酸分子包含编码TCRα链的核苷酸序列SEQ ID NO:4和包含编码TCRβ链的核苷酸序列SEQ ID NO:8。20. The nucleic acid molecule of claim 18, wherein the nucleic acid molecule comprises a nucleotide sequence of SEQ ID NO:4 encoding a TCR alpha chain and a nucleotide sequence of SEQ ID NO:8 encoding a TCR beta chain. 21.一种载体,其特征在于,所述的载体含有权利要求18所述的核酸分子。21 . A vector, characterized in that, the vector contains the nucleic acid molecule of claim 18 . 22.如权利要求21所述的载体,其特征在于,所述的载体为病毒载体。22. The vector of claim 21, wherein the vector is a viral vector. 23.如权利要求21所述的载体,其特征在于,所述的载体为慢病毒载体。23. The vector of claim 21, wherein the vector is a lentiviral vector. 24.一种分离的宿主细胞,其特征在于,所述的宿主细胞中含有权利要求21中所述的载体或染色体中整合有外源的权利要求18所述的核酸分子。24. An isolated host cell, wherein the host cell contains the vector of claim 21 or the nucleic acid molecule of claim 18 integrated into a chromosome. 25.一种细胞,其特征在于,所述细胞转导权利要求18所述的核酸分子或权利要求21中所述载体。25. A cell, wherein the cell is transduced with the nucleic acid molecule of claim 18 or the vector of claim 21. 26.如权利要求25所述的细胞,其特征在于,所述细胞为T细胞或干细胞。26. The cell of claim 25, wherein the cell is a T cell or a stem cell. 27.一种药物组合物,其特征在于,所述组合物含有药学上可接受的载体以及权利要求1-16中任一项所述的TCR、权利要求17中所述的TCR复合物、权利要求18所述的核酸分子、或权利要求24中所述的细胞。27. A pharmaceutical composition, characterized in that the composition contains a pharmaceutically acceptable carrier and the TCR described in any one of claims 1-16, the TCR complex described in claim 17, the The nucleic acid molecule of claim 18, or the cell of claim 24. 28.权利要求1-16中任一项所述的T细胞受体、或权利要求17中所述的TCR复合物或权利要求24中所述的细胞的用途,其特征在于,用于制备治疗肿瘤或自身免疫疾病的药物。28. Use of a T cell receptor according to any one of claims 1-16, or a TCR complex according to claim 17, or a cell according to claim 24, for the preparation of a treatment Drugs for tumors or autoimmune diseases. 29.如权利要求28所述的用途,其特征在于,所述肿瘤包括黑色素瘤、膀胱癌、肝癌、表皮样癌、非小细胞肺癌和鳞状细胞癌。29. The use of claim 28, wherein the tumor comprises melanoma, bladder cancer, liver cancer, epidermoid carcinoma, non-small cell lung cancer, and squamous cell carcinoma.
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