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CN102509123A - Brain functional magnetic resonance image classification method based on complex network - Google Patents

Brain functional magnetic resonance image classification method based on complex network Download PDF

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CN102509123A
CN102509123A CN2011103922695A CN201110392269A CN102509123A CN 102509123 A CN102509123 A CN 102509123A CN 2011103922695 A CN2011103922695 A CN 2011103922695A CN 201110392269 A CN201110392269 A CN 201110392269A CN 102509123 A CN102509123 A CN 102509123A
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田捷
白丽君
刘振宇
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Institute of Automation of Chinese Academy of Science
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Abstract

The invention relates to a brain functional magnetic resonance image classification method based on a complex network, which comprises the following steps: pre-processing training sample images and test sample images, carrying out region segmentation, and extracting an average time sequence from each region; calculating the partial correlation coefficient among the average time sequences, carrying out matrix binarization on the partial correlation coefficient to obtain a complex network model, and calculating the feature path length, cost and clustering degree of the complex network model to respectively obtain network features of the training sample images and the test sample images; training to obtain an adaboost classifier; and by using the adaboost classifier obtained by training, classifying the test sample images. By using information in the brain functional magnetic resonance images as much as possible, the method can accurately classify the brain functional magnetic resonance images.

Description

一种基于复杂网络的脑功能磁共振图像分类方法A Classification Method of Brain Functional Magnetic Resonance Image Based on Complex Network

技术领域 technical field

本发明属于图像处理技术领域,具体涉及一种基于复杂网络的脑功能磁共振图像分类方法。The invention belongs to the technical field of image processing, and in particular relates to a method for classifying brain functional magnetic resonance images based on a complex network.

背景技术 Background technique

功能磁共振成像(functional Magnetic Resonance Imaging,fMRI)以其高时空分辨率,非侵入式等特点在神经疾病诊断治疗方面得到了广泛应用。fMRI一般指基于血氧水平依赖(blood oxygen level-dependent,BOLD)的磁共振成像,它通过测量由神经活动引起的脑血流和脑血氧等成分变化而造成的磁共振信号变化来反应脑活动。脑是一个复杂的系统,在受到刺激条件或经历病变时脑的磁共振图像会发生相应的变化。利用图像分类方法,计算脑功能磁共振图像具有某种属性的可能性大小,或者自动判别图像的类别属性,是计算机辅助分析的一个重要应用。Functional Magnetic Resonance Imaging (fMRI) has been widely used in the diagnosis and treatment of neurological diseases due to its high spatial and temporal resolution and non-invasive features. fMRI generally refers to magnetic resonance imaging based on blood oxygen level-dependent (BOLD), which reflects changes in the brain by measuring changes in magnetic resonance signals caused by changes in cerebral blood flow and cerebral blood oxygen caused by neural activity. Activity. The brain is a complex system, and magnetic resonance images of the brain respond to stimulating conditions or lesions. It is an important application of computer-aided analysis to use image classification methods to calculate the possibility of certain attributes of brain fMRI images, or to automatically distinguish the category attributes of images.

传统的功能磁共振图像分类方法主要有感兴趣区域(ROI)方式和体素(voxel)方式两种分类方法。感兴趣区域方式的分类方法依据目标结构的先验知识,将样本和目标分割成多个目标区域,并据此对目标进行分类;体素方式的分类方法采用复杂的非线性配准,以最大限度地实现个体间的精确对应,然后以图像的每一个空间单位(体素)作为分类依据。这两种方法都假设目标与样本的内部组织结构是一一对应的。前者认为先验的图像区域存在于每一个目标图像当中,并且能够准确分割;后者假定非线性配准后的体素是一一对应的。然而,这样的假设在很多情况下并不合理。人在不同状态下的脑功能磁共振图像会受到多方面因素的干扰,传统的分类方法都不是根据脑的固有属性对脑功能磁共振图像进行分类的,因此都会导致分类性能的下降。Traditional fMRI image classification methods mainly include region of interest (ROI) method and voxel method. The classification method of the region of interest method divides the sample and the target into multiple target regions based on the prior knowledge of the target structure, and classifies the target accordingly; the classification method of the voxel method uses complex nonlinear registration to maximize To maximize the precise correspondence between individuals, and then use each spatial unit (voxel) of the image as the basis for classification. Both approaches assume a one-to-one correspondence between targets and the internal organization of samples. The former assumes that the prior image region exists in each target image and can be segmented accurately; the latter assumes that the voxels after nonlinear registration are one-to-one correspondence. However, such an assumption is unreasonable in many cases. Functional magnetic resonance images of people in different states will be disturbed by many factors. Traditional classification methods do not classify functional magnetic resonance images of brain according to the inherent properties of the brain, which will lead to a decline in classification performance.

发明内容Contents of the invention

(一)要解决的技术问题(1) Technical problems to be solved

为了克服已有技术的不足,本发明所要解决的技术问题是设计一种分类准确率高、泛化性能强的脑功能磁共振图像分类方法。In order to overcome the deficiencies of the prior art, the technical problem to be solved by the present invention is to design a method for classifying brain functional magnetic resonance images with high classification accuracy and strong generalization performance.

(二)技术方案(2) Technical solutions

为实现上述目的,本发明提出一种基于复杂网络的脑功能磁共振图像分类方法,包括以下步骤:In order to achieve the above object, the present invention proposes a method for classifying brain fMRI images based on a complex network, comprising the following steps:

步骤Sa:对训练样本图像和测试样本图像进行预处理,然后进行脑区分割,并提取各个脑区的平均时间序列;Step Sa: Preprocessing the training sample image and the test sample image, then performing brain region segmentation, and extracting the average time series of each brain region;

步骤Sb:计算各个平均时间序列之间的偏相关系数,得到偏相关系数矩阵;Step Sb: Calculating the partial correlation coefficients between each average time series to obtain a partial correlation coefficient matrix;

步骤Sc:将所述偏相关系数矩阵二值化,得到复杂网络模型;Step Sc: Binarize the partial correlation coefficient matrix to obtain a complex network model;

步骤Sd:计算该复杂网络模型的特征路径长度、成本和集群度作为功能磁共振图像的特征;Step Sd: calculating the characteristic path length, cost and clustering degree of the complex network model as the features of the fMRI image;

步骤Se:利用训练样本图像的网络参数作为该功能磁共振图像的特征中的训练样本图像的特征,来训练一自适应提高(adaboost)分类器;Step Se: using the network parameters of the training sample image as the feature of the training sample image in the feature of the functional magnetic resonance image, to train an adaptive improvement (adaboost) classifier;

步骤Sf:利用训练好的该自适应提高(adaboost)分类器对测试样本图像进行分类。Step Sf: classify the test sample image by using the trained adaptive boosting (adaboost) classifier.

(三)有益效果(3) Beneficial effects

本发明针对脑功能磁共振图像分类问题,通过构建脑网络模型、计算网络特征参数、训练自适应提高(adaboost)分类器等方法有效提高了图像分类的准确性和稳定性。Aiming at the problem of brain functional magnetic resonance image classification, the present invention effectively improves the accuracy and stability of image classification by constructing a brain network model, calculating network characteristic parameters, training an adaptive boost (adaboost) classifier and the like.

本发明能够利用脑功能磁共振图像中尽可能多的信息,脑网络参数能够从本质上反应脑的活动,弥补了传统分类方法不能体现脑活动固有属性的不足,能够精确的对脑功能磁共振图像进行分类。The present invention can utilize as much information as possible in the functional magnetic resonance image of the brain, and the parameters of the brain network can reflect the activity of the brain in essence, making up for the deficiency that the traditional classification method cannot reflect the inherent attributes of the brain activity, and can accurately analyze the functional magnetic resonance of the brain. Images are classified.

附图说明 Description of drawings

图1是本发明提供的基于复杂网络的脑功能磁共振图像分类的方法流程图;Fig. 1 is the method flowchart of the functional magnetic resonance image classification based on complex network provided by the present invention;

图2是依照本发明实施例使用本发明所述分类方法(方法A)对比现有的基于局部特征的分类方法(方法B),分类受试者操作特性(ROC)的对比曲线。Fig. 2 is a comparison curve of classification receiver operating characteristics (ROC) using the classification method of the present invention (method A) compared with the existing classification method based on local features (method B) according to an embodiment of the present invention.

具体实施方式 Detailed ways

为使本发明的目的、技术方案和优点更加清楚明白,以下结合具体实施例,并参照附图,对本发明进一步详细说明。In order to make the object, technical solution and advantages of the present invention clearer, the present invention will be described in further detail below in conjunction with specific embodiments and with reference to the accompanying drawings.

基于复杂网络的脑功能磁共振图像分类是一种全新的脑功能磁共振图像分类方法。该方法首先建立复杂脑网络模型,计算脑网络的特征路径长度和集群度,用以表征不同的图像模式;然后利用该特征路径长度和集群度来训练一个自适应提高(adaboost)分类器;最后利用训练好的该自适应提高(adaboost)分类器对测试样本图像进行分类。Functional magnetic resonance image classification based on complex networks is a new classification method for functional magnetic resonance images of brain. The method first establishes a complex brain network model, and calculates the characteristic path length and clustering degree of the brain network to represent different image patterns; then uses the characteristic path length and clustering degree to train an adaptive boost (adaboost) classifier; finally The test sample image is classified by using the trained adaptive boosting (adaboost) classifier.

参照图1,根据本发明所述的一种人脑功能磁共振成像图像分类方法,能够依据训练样本图像来确定测试样本图像的类别,具体实施步骤如下:With reference to Fig. 1, according to a kind of human brain fMRI image classification method of the present invention, can determine the category of test sample image according to training sample image, concrete implementation steps are as follows:

步骤Sa,对训练样本图像和测试样本图像进行预处理,然后进行脑区分割,并提取各个脑区的平均时间序列;Step Sa, preprocessing the training sample image and the test sample image, then performing brain region segmentation, and extracting the average time series of each brain region;

1.脑功能磁共振图像的预处理1. Preprocessing of brain fMRI images

由于磁共振扫描过程中各种各样的噪声的影响,被试个体自身存在尺度和位置上的差异,非常有必要在分析数据之前对数据做一定的预处理。在整个的实验的数据获取中,主要的噪声信息来源有:(1)物理头动;(2)图像内层间扫描时间差别;(3)外在磁场的不均匀性等。脑功能磁共振图像预处理的常见步骤有:切片扫描时间对齐,图像序列对齐,联合配准,标准化(或称均一化),空间平滑滤波和时间平滑滤波等。Due to the influence of various noises during the MRI scanning process, there are differences in the scale and position of the individual subjects themselves, so it is very necessary to preprocess the data before analyzing the data. In the data acquisition of the whole experiment, the main sources of noise information are: (1) physical head movement; (2) difference in scanning time between layers in the image; (3) inhomogeneity of the external magnetic field, etc. The common steps of brain fMRI image preprocessing include: slice scan time alignment, image sequence alignment, co-registration, standardization (or homogenization), spatial smoothing filter and temporal smoothing filter, etc.

2.脑功能磁共振图像的分割2. Segmentation of brain fMRI images

采用国际通用的结构标记模板(AAL),将全脑分为90个脑区。结构标记模板是脑功能磁共振图像研究领域使用最为广泛的脑结构模板。Using the internationally accepted structural labeling template (AAL), the whole brain was divided into 90 brain regions. Structural labeling template is the most widely used brain structural template in the field of brain fMRI image research.

3.提取各脑区的平均时间序列3. Extract the average time series of each brain region

依据预处理后的脑功能磁共振图像的数据,提取包含于相应脑区内部的各个体素在不同时间点上激活值的时间序列Y(矩阵维数D×N),其中D为包含于球体内部的体素数目,N为时间点数。所述激活值是指各个体素在不同时间点上的血氧水平依赖(BOLD)强度。According to the data of the preprocessed functional magnetic resonance image of the brain, extract the time series Y (matrix dimension D×N) of the activation values of each voxel contained in the corresponding brain area at different time points, where D is the The number of voxels inside, N is the number of time points. The activation value refers to the blood oxygen level dependence (BOLD) intensity of each voxel at different time points.

步骤Sb:计算平均各个时间序列之间的偏相关系数。该步骤Sb具体包括如下步骤:Step Sb: Calculating the average partial correlation coefficient between each time series. This step Sb specifically includes the following steps:

1.计算平均时间序列间的协方差系数1. Calculate the covariance coefficient between the average time series

依据步骤Sa提取的各个脑区的时间序列,计算各个平均时间序列之间的协方差矩阵S,S的每个元素si,j为第i个和第j个时间序列之间的协方差系数,According to the time series of each brain region extracted in step Sa, calculate the covariance matrix S between each average time series, and each element si, j of S is the covariance coefficient between the i-th and j-th time series ,

sthe s ii ,, jj == 11 Mm ΣΣ tt == 11 Mm (( xx ii (( tt )) -- xx ii ‾‾ )) (( xx jj (( tt )) -- xx jj ‾‾ ))

其中,M为时间点数目,xi(t)(i=1,…,M)为第i个时间序列,

Figure BDA0000114880530000042
为第i个时间序列的平均值,为第j个时间序列的平均值。Among them, M is the number of time points, x i (t) (i=1,...,M) is the i-th time series,
Figure BDA0000114880530000042
is the mean value of the i-th time series, is the average value of the jth time series.

2.计算平均时间序列间的偏相关系数2. Calculate the partial correlation coefficient between the average time series

依据时间序列间的协方差系数矩阵S(矩阵维度为90×90),计算时间序列间的偏相关系数矩阵R(矩阵维度为90×90),R的每个元素ri,j为:According to the covariance coefficient matrix S between time series (matrix dimension is 90×90), calculate the partial correlation coefficient matrix R between time series (matrix dimension is 90×90), each element r i, j of R is:

rr ii ,, jj == -- sthe s ii ,, jj -- 11 sthe s ii ,, ii -- 11 sthe s jj ,, jj -- 11

其中,

Figure BDA0000114880530000045
为协方差矩阵S(矩阵维度为90×90)的逆矩阵的第{i,j}个元素。in,
Figure BDA0000114880530000045
is the {i, j}th element of the inverse matrix of the covariance matrix S (the matrix dimension is 90×90).

3.对偏相关系数进行Fisher变换3. Perform Fisher transform on the partial correlation coefficient

依据偏相关系数矩阵R(矩阵维度为90×90),计算经过Fisher变换的偏相关系数矩阵F(矩阵维度为90×90),F的每个元素fij为:According to the partial correlation coefficient matrix R (the matrix dimension is 90×90), calculate the partial correlation coefficient matrix F (the matrix dimension is 90×90) after Fisher transformation, and each element f ij of F is:

ff ii ,, jj == 11 22 (( 11 ++ rr ii ,, jj 11 -- rr ii ,, jj )) ,,

其中,fij为经过Fisher变换后的偏相关系数矩阵F(矩阵维度为90×90)的第{i,j}个元素,rij为偏相关系数矩阵R(矩阵维度为90×90)的第{i,j}个元素。Among them, f ij is the {i, j}th element of the partial correlation coefficient matrix F (the matrix dimension is 90×90) after Fisher transformation, and r ij is the element of the partial correlation coefficient matrix R (the matrix dimension is 90×90). The {i, j}th element.

步骤Sc:将偏相关系数矩阵二值化,得到复杂网络模型;Step Sc: Binarize the partial correlation coefficient matrix to obtain a complex network model;

设定阈值T’,令经过Fisher变换后的偏相关系数矩阵F(矩阵维度为90×90)中大于等于T’的值为1,小于T’的值为0,得到复杂网络模型。二值化后的矩阵中1表示两个脑区之间有连接,即网络中两个节点之间的边存在,0则表示两个脑区之间没有连接,即网络中的两个节点之间没有边。阈值选取的方法为:使网络中实际存在的边的数量是网络中可能存在的边的数量

Figure BDA0000114880530000051
其中N为网络中节点的数目)的十分之一。二值化的过程可描述为令Set the threshold T', and make the value greater than or equal to T' in the partial correlation coefficient matrix F (the matrix dimension is 90×90) after Fisher transformation be 1, and the value smaller than T' be 0, so as to obtain a complex network model. In the binarized matrix, 1 indicates that there is a connection between two brain regions, that is, there is an edge between two nodes in the network, and 0 indicates that there is no connection between two brain regions, that is, there is an edge between two nodes in the network. There is no edge. The method of threshold selection is: the number of edges that actually exist in the network is the number of edges that may exist in the network
Figure BDA0000114880530000051
where N is one-tenth of the number of nodes in the network). The process of binarization can be described as

ww ii ,, jj == 11 ,, || ff ii ,, jj || &GreaterEqual;&Greater Equal; TT &prime;&prime; 00 ,, || ff ii ,, jj || << TT &prime;&prime; ,,

其中,wij为二值化后的网络的第{i,j}个元素,fij为经过Fisher变换的偏相关系数矩阵F(矩阵维度为90×90)的第{i,j}个元素,T’为选取的阈值,|·|为绝对值计算符号。Among them, w ij is the {i, j}th element of the binarized network, f ij is the {i, j}th element of the partial correlation coefficient matrix F (the matrix dimension is 90×90) after Fisher transformation , T' is the selected threshold, |·| is the sign of absolute value calculation.

步骤Sd:计算该复杂网络模型的特征路径长度、成本和集群度作为功能磁共振图像的特征;Step Sd: calculating the characteristic path length, cost and clustering degree of the complex network model as the features of the fMRI image;

依据复杂网络模型,计算该复杂网络模型的特征路径长度、成本和集群度,作为功能磁共振图像的特征。According to the complex network model, the characteristic path length, cost and cluster degree of the complex network model are calculated as the features of the functional magnetic resonance image.

特征路径长度提供了网络中某一节点的信息到达另一节点的最优路径。我们可以用特征路径长度矩阵描述网络中任意两个节点i,j的特征路径长度lij。网络平均特征路径长度L描述了网络中任意两个节点的特征路径长度的平均值,即The characteristic path length provides the optimal path for information from one node to another node in the network. We can use the characteristic path length matrix to describe the characteristic path length l ij of any two nodes i and j in the network. The average characteristic path length L of the network describes the average characteristic path length of any two nodes in the network, namely

LL == 11 NN (( NN -- 11 )) &Sigma;&Sigma; ii ,, jj &Element;&Element; VV ,, ii &NotEqual;&NotEqual; jj ll ijij

其中,N为网络中节点的个数,即分割的脑区数90;lij为节点i,j之间的特征路径长度,V为网络中所有节点的集合。Among them, N is the number of nodes in the network, that is, the number of divided brain regions is 90; l ij is the characteristic path length between nodes i and j, and V is the set of all nodes in the network.

成本是度量网络性质的一个重要参数,用来衡量构建网络所需要付出的总体代价。计算方法是用网络中实际存在的所有边的数量比上网络中最多可能存在的边的数量,即:Cost is an important parameter to measure the nature of the network, and it is used to measure the overall cost of building the network. The calculation method is to compare the number of edges that actually exist in the network with the maximum number of edges that may exist in the network, namely:

KK == &Sigma;&Sigma; KK ii 22 NN (( NN -- 11 )) 22 == 11 NN (( NN -- 11 )) &Sigma;&Sigma; KK ii ,,

其中,N为网络中节点的个数,Ki为网络中连接到节点i的边的数量,K即为网络的成本。Among them, N is the number of nodes in the network, K i is the number of edges connected to node i in the network, and K is the cost of the network.

集群度是度量网络性质的另一个重要特征,用来量度某一节点的相邻节点互为邻居的可能性。某一节点i的集群度Ci的值等于它的相邻节点之间存在的边的数目与它们之间所有可能的边数的比值,即The degree of clustering is another important feature to measure the nature of the network, and it is used to measure the possibility that the adjacent nodes of a certain node are neighbors to each other. The value of the cluster degree C i of a certain node i is equal to the ratio of the number of edges existing between its adjacent nodes to the number of all possible edges between them, that is

CC ii == ee ii kk ii (( kk ii -- 11 )) 22 == 22 ee ii kk ii (( kk ii -- 11 ))

其中,ei表示节点i的邻点之间存在的边数,ki表示节点i的邻点的数目,

Figure BDA0000114880530000063
就表示节点i的邻点之间可能存在的边数。Among them, e i represents the number of edges existing between the neighbors of node i, k i represents the number of neighbors of node i,
Figure BDA0000114880530000063
It means the number of edges that may exist between the neighbors of node i.

步骤Se:利用训练样本图像的网络参数作为该功能磁共振图像的特征中的训练样本图像的特征,来训练一自适应提高(adaboost)分类器。Step Se: using the network parameters of the training sample image as the features of the training sample image among the features of the fMRI image to train an adaptive boosting (adaboost) classifier.

得到训练样本图像的特征后,首先将特征路径长度、成本和集群度作为三个线性分类器,用这三个线性分类器的加权和组成一个新的自适应提高(adaboost)分类器,最初每个分类器的权重设为

Figure BDA0000114880530000064
(m为样本图像的数目),自适应提高(adaboost)分类器在训练过程中逐渐调整三个线性分类器的权重,最后得到一个最优的自适应提高(adaboost)分类器。具体实施步骤如下:After obtaining the characteristics of the training sample image, firstly use the feature path length, cost and cluster degree as three linear classifiers, and use the weighted sum of these three linear classifiers to form a new adaptive boosting (adaboost) classifier. Initially, each The weight of each classifier is set to
Figure BDA0000114880530000064
(m is the number of sample images), the adaptive boosting (adaboost) classifier gradually adjusts the weights of the three linear classifiers during the training process, and finally an optimal adaptive boosting (adaboost) classifier is obtained. The specific implementation steps are as follows:

对给定的样本(x1,y1),...,(xm,ym),其中xi∈X,yi∈Y=(-1,1),X为训练样本图像的网络特征,Y为图像类别,首先设定初始化分类器的权重为之后进行T次迭代,迭代过程如下:For a given sample (x 1 , y 1 ), ..., (x m , y m ), where x i ∈ X, y i ∈ Y = (-1, 1), X is the network of training sample images feature, Y is the image category, first set the weight of the initialization classifier as Then perform T iterations, the iteration process is as follows:

变量t从1开始增加到T,每次迭代首先计算每个特征ht对训练样本图像进行分类得到的分类误差εt,然后计算新的样本权重,The variable t increases from 1 to T, each iteration first calculates the classification error ε t obtained by classifying the training sample image for each feature h t , and then calculates the new sample weight,

&alpha;&alpha; tt == 11 22 lnln (( 11 -- &epsiv;&epsiv; tt &epsiv;&epsiv; tt )) ,,

最后,更新各线性分类器的权重,Finally, update the weights of each linear classifier,

DD. tt ++ 11 (( ii )) == DD. tt (( ii )) ZZ tt ee -- &alpha;&alpha; tt ,, hh tt (( xx ii )) == ythe y ii ee &alpha;&alpha; tt ,, hh tt (( xx ii )) &NotEqual;&NotEqual; ythe y ii ,,

其中Zt为归一化因子。where Z t is the normalization factor.

循环结束后得到最优自适应提高(adaboost)分类器:After the loop ends, the optimal adaptive boost (adaboost) classifier is obtained:

Hh (( xx )) == signsign (( &Sigma;&Sigma; tt == 11 TT &alpha;&alpha; tt hh tt (( xx )) )) ..

步骤Sf:利用训练得到的最优自适应提高(adaboost)分类器对测试样本图像进行分类。Step Sf: classify the test sample image by using the optimal adaptive boosting (adaboost) classifier obtained through training.

将测试样本输入上述步骤得到的最优自适应提高(adaboost)分类器,对测试样本图像进行分类,分类结果通过分类正确率、真阳性率和假阳性率输出。Input the test sample into the optimal adaptive boosting (adaboost) classifier obtained in the above steps to classify the test sample image, and the classification result is output through classification correct rate, true positive rate and false positive rate.

本发明所述的基于复杂网络的脑功能磁共振图像分类方法的效果,可通过真实的脑功能磁共振脑成像数据得以说明:The effect of the functional magnetic resonance image classification method based on the complex network of the present invention can be illustrated by real functional magnetic resonance imaging data of the brain:

(1)真实数据实验过程(1) Real data experiment process

为展示本发明的效果,在实施方案中采用真实数据集作测试,共39个被试参与了实验,20男、19女。被试年龄段及临床痴呆分级信息见表格1。实验采用T2*加权梯度回波平面成像(Echo-Planar Imaging,EPI)序列获取针刺刺激后BOLD fMRI静息数据。In order to demonstrate the effect of the present invention, a real data set is used for testing in the embodiment, and a total of 39 subjects participated in the experiment, 20 males and 19 females. See Table 1 for the age group and clinical dementia classification information of the subjects. In the experiment, T2* weighted gradient echo planar imaging (Echo-Planar Imaging, EPI) sequence was used to obtain BOLD fMRI resting data after acupuncture stimulation.

采用统计参数图(SPM)软件(http://www.fil.ion.ucl.ac.uk/spm/)对数据进行预处理,包括切片扫描时间对齐,图像序列对齐,联合配准,标准化(或称均一化)、空间平滑滤波。使用本发明所述方法(方法A)对比现有的基于局部特征的分类方法(方法B),获取分类方法的受试者操作特性(ROC)曲线及其曲线下面积(AUC),并将ROC曲线和AUC作为分类器性能的度量。Statistical Parametric Mapping (SPM) software ( http://www.fil.ion.ucl.ac.uk/spm/ ) was used to preprocess the data, including slice scan time alignment, image sequence alignment, co-registration, and standardization ( Or called homogenization), spatial smoothing filter. Using the method of the present invention (method A) to compare the existing classification method (method B) based on local features, obtain the receiver operating characteristic (ROC) curve and the area under the curve (AUC) of the classification method, and use the ROC Curves and AUC as measures of classifier performance.

表格1被试信息Form 1 Subject Information

Figure BDA0000114880530000081
Figure BDA0000114880530000081

(2)实验结果(2) Experimental results

在真实实验数据集上两种方法的分类ROC曲线分别在图2中显示,其中,图2中的真阳性率是指实际为阳性而按该筛检试验的标准被正确地判为阳性的百分比,假阳性率是指实际为阴性而按该筛检试验的标准被错误地判为阳性的百分比。如图2所示,方法A的ROC曲线在大部分阈值范围内高于方法B;AUC值对比情况:方法A的AUC值为0.85,方法B的AUC值为0.78。曲线下面积(AUC)能度量总体分类性能、后验概率和排序性能,AUC值越大,则该分类方法的总体性能越好。由此,方法A效果好于方法B。The classification ROC curves of the two methods on the real experimental data set are shown in Figure 2, where the true positive rate in Figure 2 refers to the percentage that is actually positive and is correctly judged as positive according to the standard of the screening test , the false positive rate refers to the percentage that is actually negative but is wrongly judged positive according to the standard of the screening test. As shown in Figure 2, the ROC curve of method A is higher than that of method B in most threshold ranges; AUC value comparison: the AUC value of method A is 0.85, and the AUC value of method B is 0.78. The area under the curve (AUC) can measure the overall classification performance, posterior probability and sorting performance. The larger the AUC value, the better the overall performance of the classification method. Therefore, method A works better than method B.

实验结果说明,本发明所述的基于复杂网络的脑功能磁共振图像分类方法,有效地提高了脑功能磁共振图像的分类性能。Experimental results show that the complex network-based classification method for functional magnetic resonance images of the brain effectively improves the classification performance of functional magnetic resonance images of the brain.

以上所述,仅为本发明中的具体实施方式,但本发明的保护范围并不局限于此,任何熟悉该技术的人在本发明所揭露的技术范围内,可理解想到的变换或替换,都应涵盖在本发明的权利要求书的保护范围之内。The above is only a specific implementation mode in the present invention, but the scope of protection of the present invention is not limited thereto. Anyone familiar with the technology can understand the conceivable transformation or replacement within the technical scope disclosed in the present invention. All should be covered within the scope of protection of the claims of the present invention.

Claims (8)

1.一种基于复杂网络的脑功能磁共振图像分类方法,其特征在于,包括以下步骤:1. a method for classifying functional magnetic resonance images of the brain based on a complex network, characterized in that, comprising the following steps: 步骤Sa:对训练样本图像和测试样本图像进行预处理,然后进行脑区分割,并提取各个脑区的平均时间序列;Step Sa: Preprocessing the training sample image and the test sample image, then performing brain region segmentation, and extracting the average time series of each brain region; 步骤Sb:计算各个平均时间序列之间的偏相关系数,得到偏相关系数矩阵;Step Sb: Calculating the partial correlation coefficients between each average time series to obtain a partial correlation coefficient matrix; 步骤Sc:将所述偏相关系数矩阵二值化,得到复杂网络模型;Step Sc: Binarize the partial correlation coefficient matrix to obtain a complex network model; 步骤Sd:计算该复杂网络模型的特征路径长度、成本和集群度作为功能磁共振图像的特征;Step Sd: calculating the characteristic path length, cost and clustering degree of the complex network model as the features of the fMRI image; 步骤Se:利用训练样本图像的网络参数作为该功能磁共振图像的特征中的训练样本图像的特征,来训练一自适应提高(adaboost)分类器;Step Se: using the network parameters of the training sample image as the feature of the training sample image in the feature of the functional magnetic resonance image, to train an adaptive improvement (adaboost) classifier; 步骤Sf:利用训练好的该自适应提高(adaboost)分类器对测试样本图像进行分类。Step Sf: classify the test sample image by using the trained adaptive boosting (adaboost) classifier. 2.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其特征在于,所述对训练样本图像和测试样本图像进行预处理,是在保留脑功能图像细节的同时,使用脑功能图像与标准模板进行仿射配准变换方式的预处理,并提高脑功能图像的信噪比。2. the functional brain magnetic resonance image classification method based on complex network as claimed in claim 1, is characterized in that, described training sample image and test sample image are carried out preprocessing, is while retaining the brain function image detail, using The brain function image and the standard template are preprocessed by affine registration transformation, and the signal-to-noise ratio of the brain function image is improved. 3.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其特征在于,所述提取脑区平均时间序列的步骤为:3. the method for classifying functional magnetic resonance images of brain based on complex network as claimed in claim 1, is characterized in that, the step of described extraction brain area mean time series is: 首先按照标准脑结构模板将全脑分为90个脑区,分别提取每个脑区内部各个体素在不同时间点上的激活值,再将各个体素的激活值进行平均,得到脑区平均时间序列。First, divide the whole brain into 90 brain regions according to the standard brain structure template, extract the activation values of each voxel in each brain region at different time points, and then average the activation values of each voxel to obtain the average brain region sequentially. 4.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其特征在于,计算各个平均时间序列之间的偏相关系数的方法为:4. the fMRI image classification method based on complex network as claimed in claim 1, is characterized in that, the method for calculating the partial correlation coefficient between each mean time series is: 首先计算各个平均时间序列之间的协方差矩阵S,该协方差矩阵维度为90×90,S的每个元素si,j为第i个和第j个时间序列之间的协方差系数,First calculate the covariance matrix S between the average time series, the covariance matrix dimension is 90×90, each element si,j of S is the covariance coefficient between the i-th and j-th time series, sthe s ii ,, jj == 11 Mm &Sigma;&Sigma; tt == 11 Mm (( xx ii (( tt )) -- xx ii &OverBar;&OverBar; )) (( xx jj (( tt )) -- xx jj &OverBar;&OverBar; )) ,, 其中,M为时间点数目,xi(t)(i=1,…,M)为第i个时间序列,
Figure FDA0000114880520000021
为第i个时间序列的平均值,
Figure FDA0000114880520000022
为第j个时间序列的平均值。
Among them, M is the number of time points, x i (t) (i=1,...,M) is the i-th time series,
Figure FDA0000114880520000021
is the mean value of the i-th time series,
Figure FDA0000114880520000022
is the average value of the jth time series.
然后,计算平均时间序列间的偏相关系数矩阵R,该偏相关系数矩阵R的维度为90×90,R的每个元素ri,j为:Then, calculate the partial correlation coefficient matrix R between the average time series, the dimension of the partial correlation coefficient matrix R is 90×90, and each element r i, j of R is: rr ii ,, jj == -- sthe s ii ,, jj -- 11 sthe s ii ,, ii -- 11 sthe s jj ,, jj -- 11 ;; 其中,
Figure FDA0000114880520000024
为协方差矩阵S的逆矩阵的第{i,j}个元素;
in,
Figure FDA0000114880520000024
is the {i, j}th element of the inverse matrix of the covariance matrix S;
最后,对偏相关系数进行Fisher变换,得到经过Fisher变换后的偏相关系数矩阵F该变换后的偏相关系数矩阵维度为90×90。Finally, the Fisher transform is performed on the partial correlation coefficients to obtain the partial correlation coefficient matrix F after the Fisher transform. The dimension of the transformed partial correlation coefficient matrix is 90×90.
5.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其特征在于,所述将所述偏相关系数矩阵二值化得到复杂网络模型的步骤,包括:5. the functional brain functional magnetic resonance image classification method based on complex network as claimed in claim 1, is characterized in that, described partial correlation coefficient matrix binarization obtains the step of complex network model, comprises: 选取阈值将经过Fisher变换的偏相关系数矩阵F二值化,该变换后的偏相关系数矩阵维度为90×90,二值化后1表示两个脑区之间有连接,即网络中两个节点之间的边存在,0则表示两个脑区之间没有连接,即网络中的两个节点之间没有边;Select the threshold to binarize the partial correlation coefficient matrix F after Fisher transformation. The dimension of the transformed partial correlation coefficient matrix is 90×90. After binarization, 1 indicates that there is a connection between two brain regions, that is, two There is an edge between nodes, and 0 means that there is no connection between the two brain regions, that is, there is no edge between two nodes in the network; 阈值选取的方法为:使选用此阈值进行了二值化后的网络中实际存在的边的数量是网络中可能存在的边的数量的十分之一。The method for selecting the threshold is as follows: the number of edges actually existing in the network after the threshold is selected for binarization is one-tenth of the number of possible edges in the network. 6.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其中所述计算该复杂网络模型的特征路径长度的步骤为:6. the functional magnetic resonance image classification method based on complex network as claimed in claim 1, wherein said step of calculating the characteristic path length of this complex network model is: 用特征路径长度矩阵描述网络中任意两个节点i,j的特征路径长度lij,网络平均特征路径长度L描述了网络中任意两个节点的特征路径长度的平均值,即Use the characteristic path length matrix to describe the characteristic path length l ij of any two nodes i and j in the network, and the average characteristic path length L of the network describes the average value of the characteristic path lengths of any two nodes in the network, namely LL == 11 NN (( NN -- 11 )) &Sigma;&Sigma; ii ,, jj &Element;&Element; VV ,, ii &NotEqual;&NotEqual; jj ll ijij 其中,N为网络中节点的个数,即分割的脑区数90;lij为节点i,j之间的特征路径长度,V为网络中所有节点的集合。Among them, N is the number of nodes in the network, that is, the number of divided brain regions is 90; l ij is the characteristic path length between nodes i and j, and V is the set of all nodes in the network. 7.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其中所述计算该复杂网络模型的成本的步骤为:7. the functional magnetic resonance image classification method based on complex network as claimed in claim 1, wherein said step of calculating the cost of this complex network model is: 用网络中实际存在的所有边的数量比上网络中最多可能存在的边的数量,即:Use the number of all edges that actually exist in the network to compare the number of edges that may exist in the network at most, that is: KK == &Sigma;&Sigma; KK ii 22 NN (( NN -- 11 )) 22 == 11 NN (( NN -- 11 )) &Sigma;&Sigma; KK ii ,, 其中,N为网络中节点的个数,Ki为网络中连接到节点i的边的数量。Among them, N is the number of nodes in the network, and K i is the number of edges connected to node i in the network. 8.如权利要求1所述的基于复杂网络的脑功能磁共振图像分类方法,其中所述计算该复杂网络模型的集群度的步骤为:8. the functional magnetic resonance image classification method based on complex network as claimed in claim 1, wherein the step of calculating the degree of clustering of this complex network model is: 某一节点i的集群度Ci的值等于它的相邻节点之间存在的边的数目与它们之间所有可能的边数的比值,即The value of the cluster degree C i of a certain node i is equal to the ratio of the number of edges existing between its adjacent nodes to the number of all possible edges between them, that is CC ii == ee ii kk ii (( kk ii -- 11 )) 22 == 22 ee ii kk ii (( kk ii -- 11 )) 其中,ei表示节点i的邻点之间存在的边数,ki表示节点i的邻点的数目,
Figure FDA0000114880520000033
就表示节点i的邻点之间可能存在的边数。
Among them, e i represents the number of edges existing between the neighbors of node i, k i represents the number of neighbors of node i,
Figure FDA0000114880520000033
It means the number of edges that may exist between the neighbors of node i.
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