CN103146614A - Camptotheca endophytic bacterium LY214 for producing camptothecin and application thereof - Google Patents
Camptotheca endophytic bacterium LY214 for producing camptothecin and application thereof Download PDFInfo
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Abstract
本发明涉及一株从珙桐科植物喜树(Camptotheca acuminata)中分离纯化得到的喜树内生细菌及其用途。本发明所涉及的喜树内生细菌LY214经形态学和分子生物学鉴定为多粘芽孢杆菌(Paenibacillus polymyxa),该菌株保藏在中国微生物菌种保藏管理委员会普通微生物中心,保藏日期2012年11月19日,保藏编号CGMCC 6841。本发明的显著特征是经高效液相色谱、紫外光谱和质谱分析表明,喜树内生细菌LY214菌株经液体发酵能产生抗肿瘤活性成分喜树碱。本发明首次公开了从喜树中分离培养出产喜树碱的内生细菌,为喜树碱的制备提供了一条新途径。
The invention relates to a Camptotheca acuminata endophytic bacterium isolated and purified from Camptotheca acuminata and its application. The endophytic bacterium LY214 involved in the present invention is identified as Paenibacillus polymyxa by morphology and molecular biology. On the 19th, deposit number CGMCC 6841. The notable feature of the present invention is that the high-performance liquid chromatography, ultraviolet spectrum and mass spectrometry analysis show that the camptothecin, an antitumor active ingredient, can be produced by the camptothecin endophytic bacterium strain LY214 through liquid fermentation. The invention discloses for the first time the isolation and cultivation of endophytic bacteria producing camptothecin from camptothecin, and provides a new way for the preparation of camptothecin.
Description
技术领域technical field
本发明涉及一株喜树内生细菌的分离、培养及其用途,属于医药生物技术领域。The invention relates to the isolation, cultivation and application of a camphor tree endophytic bacterium, belonging to the field of medical biotechnology.
背景技术Background technique
喜树碱(CPT)是由色胺和裂环马钱子苷缩合形成的萜类吲哚生物碱,最早从我国特有植物喜树(Camptotheca acuminata)树皮中分离获得,后来陆续在多种植物中发现,如夹竹桃科的海木狗牙花(Ervatamiaheyneana)、茶茱萸科的臭味假柴龙树(Nothapodytes foetida)以及茜草科的短小蛇根草(Ophiorrhiza pumila)等。喜树碱抗肿瘤机制独特,通过抑制拓扑异构酶I而发挥抗肿瘤活性。喜树碱系列衍生物对胰腺癌、前列腺癌、乳腺癌、肺癌、卵巢癌、肠癌、子宫颈癌、胃癌和血液肿瘤等均有效,是全球抗肿瘤药物市场上的主要品种。Camptothecin (CPT) is a terpenoid indole alkaloid formed by the condensation of tryptamine and split loganin. It was first isolated from the bark of the unique plant Camptotheca acuminata in my country, and was later found in many plants. Such as Ervatamiaheyneana (Ervatamiaheyneana) in the Oleander family, Nothapodytes foetida (Nothapodytes foetida) in the Tea Cornaceae family, and Ophiorrhiza pumila in the Rubiaceae family. Camptothecin has a unique anti-tumor mechanism, and exerts anti-tumor activity by inhibiting topoisomerase I. Camptothecin series derivatives are effective against pancreatic cancer, prostate cancer, breast cancer, lung cancer, ovarian cancer, colon cancer, cervical cancer, gastric cancer and blood tumors, and are the main varieties in the global anti-tumor drug market.
喜树碱的来源主要有1)从植物中提取;2)化学合成;3)植物细胞培养。从植物中提取喜树碱是目前采用的主要方式。然而,喜树碱在植物中的含量较低(一般为0.1-0.2%左右,在新鲜树叶中含量稍高,达0.4-0.5%),其提取、分离、纯化、制备过程繁琐、较为困难;另外产喜树碱植物的生长周期均较长,并且喜树碱的积累进程缓慢。我国是喜树碱的主要生产国和出口国,单纯从植物中提取势必造成对植物资源和生态环境的巨大破坏。此外,提取过程中大量有机溶剂的使用导致环境污染大、步骤繁琐。喜树碱的化学全合成是通过不同的建环方法合成,例如拆分法、不对称氧化法等,多数方法存在路线过长,总产率过低等不足,较难实现工业化。利用植物细胞培养法生产高附加值的植物次生代谢产物(如喜树碱及其衍生物)一度被认为是一条很有希望的替代途径,但也因植物细胞生长缓慢、培养过程中异质化严重、产量不稳定、生产成本等因素致使实现工业化生产困难重重。总之,喜树碱的来源有限,根本不能满足市场需求(国际市场每年喜树碱需求量3000kg,但是全球喜树碱年产量仅600kg),需要发现和研发替代资源及技术。The main sources of camptothecin are 1) extraction from plants; 2) chemical synthesis; 3) plant cell culture. Extracting camptothecin from plants is the main method currently used. However, the content of camptothecin in plants is low (generally about 0.1-0.2%, and the content in fresh leaves is slightly higher, reaching 0.4-0.5%), and its extraction, separation, purification, and preparation processes are cumbersome and difficult; In addition, the growth cycle of camptothecin-producing plants is long, and the accumulation process of camptothecin is slow. my country is the main producer and exporter of camptothecin, and simply extracting it from plants will inevitably cause huge damage to plant resources and the ecological environment. In addition, the use of a large amount of organic solvents in the extraction process leads to large environmental pollution and cumbersome steps. The chemical total synthesis of camptothecin is synthesized by different ring-building methods, such as split method, asymmetric oxidation method, etc. Most methods have shortcomings such as too long route and low total yield, so it is difficult to realize industrialization. The use of plant cell culture to produce high value-added plant secondary metabolites (such as camptothecin and its derivatives) was once considered a promising alternative, but due to the slow growth of plant cells and the heterogeneity of the culture process Factors such as severe globalization, unstable output, and production costs have made it difficult to realize industrialized production. In short, the sources of camptothecin are limited and cannot meet the market demand at all (the annual demand for camptothecin in the international market is 3000kg, but the global annual output of camptothecin is only 600kg), and it is necessary to discover and develop alternative resources and technologies.
植物内生菌是指那些在其生活史的一定阶段或全部阶段生活于健康植物各种组织和器官内部或细胞间隙的真菌或细菌。鉴于部分内生菌能够促使药用植物次生代谢产物的合成,产生与宿主相同或相似的药用活性成分,无论从生态还是经济的角度来看,利用植物内生菌作为资源,寻找与共生植株相同或相似的天然活性物质,尤其是抗肿瘤天然药物将是一项永不枯竭的资源。此外,微生物生长迅速,易于培养,成本相对低廉,同时,微生物易于通过基因工程等生物技术进行定向改造,具有良好的发展前景。Plant endophytes refer to those fungi or bacteria that live in various tissues and organs of healthy plants or in the intercellular space during a certain stage or all stages of their life history. In view of the fact that some endophytes can promote the synthesis of secondary metabolites of medicinal plants and produce the same or similar medicinal active ingredients as the host, no matter from the perspective of ecology or economy, using plant endophytes as resources to find and symbiotic The same or similar natural active substances of plants, especially anti-tumor natural medicines will be an inexhaustible resource. In addition, microorganisms grow rapidly, are easy to cultivate, and the cost is relatively low. At the same time, microorganisms are easy to undergo directional transformation through biotechnology such as genetic engineering, so they have good development prospects.
迄今已有关于从不同种属的植物如喜树、臭味假柴龙树和柴龙树(Apodytes dimidiata E.Mey.ex Arn)等植物中分离获得产喜树碱及其类似物的内生真菌的相关报道(见表1),这些研究表明利用微生物发酵生产喜树碱成为一种可能,并且采用植物内生菌发酵生产喜树碱无疑是解决喜树碱原料来源的绿色途径。So far, there have been studies on the isolation of endogenous camptothecin and its analogues from plants of different genera such as camptothecin, Apodytes dimidiata E.Mey.ex Arn, etc. Related reports on fungi (see Table 1), these studies show that it is possible to use microbial fermentation to produce camptothecin, and the use of plant endophyte fermentation to produce camptothecin is undoubtedly a green way to solve the source of camptothecin raw materials.
发明内容Contents of the invention
本发明的目的是首次提供了一种从喜树中分离、培养获得的喜树内生细菌Paenibacillus polymyxa LY214,及其应用,即用于制备喜树碱。The object of the present invention is to provide for the first time a camptothecin endophytic bacterium Paenibacillus polymyxa LY214 isolated and cultivated from camptothecin, and its application, that is, for the preparation of camptothecin.
为达到本发明的目的,本发明采用的技术方案如下:For achieving the purpose of the present invention, the technical scheme that the present invention adopts is as follows:
本发明提供了一种喜树内生细菌,其命名为Paenibacillus polymyxaLY214。本发明所述的喜树内生细菌Paenibacillus polymyxa LY214是从珙桐科植物喜树树皮中分离得到的内生细菌。经过形态学和分子生物学鉴定,该菌属于多粘类芽孢杆菌(Paenibacillus polymyxa)。该菌已保藏于中国微生物菌种保藏管理委员会普通微生物中心(地址:北京市朝阳区大屯路,中国科学院微生物研究所),保藏日期2012年11月19日,保藏编号CGMCC 6841。The invention provides a camphor tree endophytic bacterium named Paenibacillus polymyxaLY214. The endophytic bacterium Paenibacillus polymyxa LY214 of the present invention is an endophytic bacterium isolated from the bark of Campylodontaceae plant. After morphological and molecular biological identification, the bacteria belonged to Paenibacillus polymyxa. The bacterium has been preserved in the General Microbiology Center of the China Committee for the Collection of Microbial Cultures (Address: Datun Road, Chaoyang District, Beijing, Institute of Microbiology, Chinese Academy of Sciences), with a preservation date of November 19, 2012 and a preservation number of CGMCC 6841.
从喜树中分离得到的上述内生细菌Paenibacillus polymyxa LY214的16S rDNA碱基序列如SEQ ID NO.1所示为:The 16S rDNA base sequence of the above-mentioned endophytic bacterium Paenibacillus polymyxa LY214 isolated from Campylodon japonica is shown in SEQ ID NO.1 as follows:
AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGGGTTGATTAGAAGCTTGCTTCTAATCAACCTAGCGGCGGACGGGTGAGTAACACGTAGGCAACCTGCCCACAAGACAGGGATAACTACCGGAAACGGTAGCTAATACCCGATACATCCTTTTCCTGCATGGGAGAAGGAGGAAAGACGGAGCAATCTGTCACTTGTGGATGGGCCTGCGGCGCATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTTGCCAGGGAAGAACGTCTTGTAGAGTAACTGCTACAAGAGTGACGGTACCTGAGAAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGCTTTTTAAGTCTGGTGTTTAATCCCGAGGCTCAACTTCGGGTCGCACTGGAAACTGGGGAGCTTGAGTGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGATATGTGGAGGAACACCAGTGGCGAAGGCGACTCTCTGGGCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCTAGGTGTTAGGGGTTTCGATACCCTTGGTGCCGAAGTTAACACATTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCAGTGGAGTATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCCTCTGACCGGTCTAGAGATAGACCTTTCCTTCGGGACAGAGGAGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATGCTTAGTTGCCAGCAGGTCAAGCTGGGCACTCTAAGCAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTACTACAATGGCCGGTACAACGGGAAGCGAAATCGCGAGGTGGAGCCAATCCTAGAAAAGCCGGTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGTCGGAATTGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCACGAGAGTTTACAACACCCGAAGTCGGTGGGGTAACCCGCAAGGGAGCCAGCCGCCGAAGGTGGGGTAGATGATTGGGGTGAAGTCGTAACAAGGTAACC。AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGGGGTTGATTAGAAGCTTGCTTCTAATCAACCTAGCGGCGGACGGGTGAGTAACACGTAGGCAACCTGCCCACAAGACAGGGATAACTACCGGAAACGGTAGCTAATACCCGATACATCCTTTTCCTGCATGGGAGAAGGAGGAAAGACGGAGCAATCTGTCACTTGTGGATGGGCCTGCGGCGCATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTTGCCAGGGAAGAACGTCTTGTAGAGTAACTGCTACAAGAGTGACGGTACCTGAGAAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGCTTTTTAAGTCTGGTGTTTAATCCCGAGGCTCAACTTCGGGTCGCACTGGAAACTGGGGAGCTTGAGTGCAGAAGAGGAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGATATGTGGAGGAACACCAGTGGCGAAGGCGACTCTCTGGGCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCTAGGTGTTAGGGGTTTCGATACCCTTGGTGCCGAAGTTAACACATTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCAGTGGAGTATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACAT CCCTCTGACCGGTCTAGAGATAGACCTTTCCTTCGGGACAGAGGAGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATGCTTAGTTGCCAGCAGGTCAAGCTGGGCACTCTAAGCAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTACTACAATGGCCGGTACAACGGGAAGCGAAATCGCGAGGTGGAGCCAATCCTAGAAAAGCCGGTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGTCGGAATTGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCACGAGAGTTTACAACACCCGAAGTCGGTGGGGTAACCCGCAAGGGAGCCAGCCGCCGAAGGTGGGGTAGATGATTGGGGTGAAGTCGTAACAAGGTAACC。
测序结果递交NCBI(网址为http://blast.ncbi.nlm.nih.gov/Blast)进行比对,根据BLAST结果并结合形态学特征得出结论,确证该菌株属于多粘类芽孢杆菌(Paenibacillus polymyxa)。The sequencing results were submitted to NCBI (http://blast.ncbi.nlm.nih.gov/Blast) for comparison. Based on the BLAST results and morphological characteristics, it was concluded that the strain belonged to Paenibacillus polymyxa polymyxa).
本发明还提供了一种从喜树中分离多粘类芽孢杆菌(Paenibacilluspolymyxa)LY214的方法,该方法包括:The present invention also provides a method for isolating Paenibacillus polymyxa LY214 from camptophylla, the method comprising:
将喜树植物材料按照常规操作切段、清洗、消毒后接种到5%水琼脂固体培养基,28℃±2℃恒温培养2~3周,待植物材料长出菌丝,挑取菌丝移至沙氏琼脂固体培养基继续培养,最后经纯化后得到内生细菌多粘类芽孢杆菌Paenibacillus polymyxa LY214。其中,该步中,按照接种的一般操作方法,经切段、清洗、消毒的喜树植物材料可以在接种前先切断,并将新切面接种到5%水琼脂固体培养基。Cut the plant material of Campylodon chinensis into sections according to the routine operation, clean and disinfect, inoculate it into 5% water agar solid medium, and cultivate it at a constant temperature of 28°C±2°C for 2 to 3 weeks. Continue culturing on the Sabouraud agar solid medium, and finally obtain the endophytic bacterium Paenibacillus polymyxa LY214 after purification. Wherein, in this step, according to the general operation method of inoculation, the camphor tree plant material through cutting, cleaning and disinfection can be cut off before inoculation, and the new cut surface can be inoculated into 5% water agar solid medium.
其中,所述喜树植物材料是喜树树根或树皮或果实或树叶或树枝。Wherein, the plant material of Campylodon chinensis is root or bark or fruit or leaves or branches of Campylomania japonica.
本发明还提供了一种上述多粘类芽孢杆菌(Paenibacillus polymyxa)LY214在制备喜树碱中的应用。The present invention also provides an application of the above-mentioned Paenibacillus polymyxa LY214 in preparing camptothecin.
具体地,上述利用多粘类芽孢杆菌(Paenibacillus polymyxa)LY214来制备喜树碱的用途中,其中多粘类芽孢杆菌(Paenibacillus polymyxa)LY214来制备喜树碱的方法包括多粘类芽孢杆菌(Paenibacilluspolymyxa)LY214菌株发酵培养步骤和喜树碱提取步骤。Specifically, in the above-mentioned use of Paenibacillus polymyxa (Paenibacillus polymyxa) LY214 to prepare camptothecin, wherein the method for preparing camptothecin from Paenibacillus polymyxa (Paenibacillus polymyxa) LY214 includes Paenibacillus polymyxa (Paenibacillus polymyxa) ) LY214 strain fermentation culture step and camptothecin extraction step.
其中,在所述发酵培养步骤中,将多粘类芽孢杆菌(Paenibacilluspolymyxa)LY214菌株接种到沙氏琼脂液体培养基,摇床160±20rpm,28±2℃,发酵培养8~15d,得到发酵混合物;Wherein, in the step of fermentation and cultivation, inoculate Paenibacillus polymyxa LY214 strain into Sabouraud agar liquid medium, shaker 160±20rpm, 28±2°C, ferment and cultivate for 8-15 days to obtain the fermentation mixture ;
在所述喜树碱提取步骤中,将发酵混合物经4000rpm离心15min,过滤,分别收集滤液与菌丝体;所述滤液经氯仿-甲醇(V/V=4:1)混合溶剂萃取,有机相于40℃减压浓缩至干得到发酵液提取物;所述菌丝体研磨破碎,甲醇浸泡过夜,等体积氯仿-甲醇(V/V=4:1)混合溶剂萃取,有机相40℃减压浓缩得到菌丝体提取物;发酵液提取物或菌丝体提取物加入氯仿-甲醇(V/V=4:1)溶解,经针头过滤器过滤得到喜树碱粗提物。In the camptothecin extraction step, the fermentation mixture was centrifuged at 4000 rpm for 15 minutes, filtered, and the filtrate and mycelium were collected respectively; the filtrate was extracted with a mixed solvent of chloroform-methanol (V/V=4:1), and the organic phase Concentrate to dryness under reduced pressure at 40°C to obtain the fermentation broth extract; the mycelium is ground and broken, soaked in methanol overnight, extracted with an equal volume of chloroform-methanol (V/V=4:1) mixed solvent, and the organic phase is decompressed at 40°C Concentrate to obtain mycelium extract; add chloroform-methanol (V/V=4:1) to dissolve the fermentation broth extract or mycelium extract, and filter through a needle filter to obtain a crude camptothecin extract.
另外,在上述利用多粘类芽孢杆菌(Paenibacillus polymyxa)LY214来制备喜树碱的方法中,依照常规操作必要时可以在多粘类芽孢杆菌Paenibacillus polymyxa LY214菌株发酵培养步骤前有多粘类芽孢杆菌Paenibacillus polymyxa LY214菌株种子液制备步骤。其中该种子液制备步骤包括菌种活化与种子培养。其中菌种活化中,活化培养基为沙氏固体培养基,28±2℃,培养时间5~7d;种子培养中,培养基为沙氏液体培养基,28±2℃,摇床160±20rpm培养2~3d。In addition, in the above-mentioned method of preparing camptothecin by using Paenibacillus polymyxa LY214, according to routine operations, if necessary, Paenibacillus polymyxa LY214 strain fermentation can be carried out before the Paenibacillus polymyxa LY214 strain fermentation step. Preparation steps of Paenibacillus polymyxa LY214 strain seed solution. Wherein the seed solution preparation step includes strain activation and seed cultivation. Among them, in the activation of strains, the activation medium is Sabouraud solid medium, 28±2°C, and the culture time is 5-7d; in seed cultivation, the medium is Sabouraud liquid medium, 28±2°C, shaker 160±20rpm Cultivate for 2-3 days.
多粘类芽孢杆菌Paenibacillus polymyxa LY214经发酵培养制得的发酵液提取物或菌丝体提取物的成分分析显示,喜树碱主要存在于发酵液提取物中,菌丝体提取物中仅含有痕量喜树碱。The component analysis of the fermentation broth extract or mycelium extract obtained by Paenibacillus polymyxa LY214 through fermentation culture showed that camptothecin mainly existed in the fermentation broth extract, and only traces of camptothecin were present in the mycelium extract. amount of camptothecin.
本发明的有益效果:Beneficial effects of the present invention:
(1)从喜树植物中分离出新的喜树内生菌多粘类芽孢杆菌Paenibacillus polymyxa LY214,为喜树碱新药源的开发提供了一株新的微生物;(2)多粘类芽孢杆菌Paenibacillus polymyxa LY214具有产喜树碱特性,能够应用于制备喜树碱;(3)与现有技术相比,本发明所述对象为细菌,具有生长繁殖迅速,易培养、发酵等优点(见表1);(4)多粘类芽孢杆菌Paenibacillus polymyxa LY214分离方法简单易控制;(5)利用多粘类芽孢杆菌Paenibacillus polymyxa LY214获得喜树碱的方法简单易控制。(1) A new camptothecin endophyte, Paenibacillus polymyxa LY214, was isolated from camptothecin plants, providing a new microorganism for the development of new drug sources for camptothecin; (2) Paenibacillus polymyxa Paenibacillus polymyxa LY214 has the characteristic of producing camptothecin, and can be applied to the preparation of camptothecin; (3) Compared with the prior art, the object of the present invention is bacteria, which has the advantages of rapid growth and reproduction, easy cultivation and fermentation (see table 1); (4) The isolation method of Paenibacillus polymyxa LY214 is simple and easy to control; (5) The method of obtaining camptothecin from Paenibacillus polymyxa LY214 is simple and easy to control.
表1本发明喜树内生细菌与现有报导的比较The comparison of table 1 camptophytic endophytic bacteria of the present invention and existing reports
附图说明Description of drawings
图1是喜树碱标准品(I)和产喜树碱的喜树内生细菌多粘类芽孢杆菌LY214(Paenibacillus polymyxa LY214)的发酵提取物(II)的HPLC-DAD图,其中·为喜树碱;Figure 1 is the HPLC-DAD diagram of the camptothecin standard (I) and the fermentation extract (II) of the camptothecin-producing endophytic bacterium Paenibacillus polymyxa LY214 (Paenibacillus polymyxa LY214), where Rectamine;
图2是喜树碱标准品(I)和喜树内生细菌多粘类芽孢杆菌LY214(Paenibacillus polymyxa LY214)所产喜树碱(II)紫外图;Figure 2 is the ultraviolet diagram of camptothecin standard (I) and camptothecin (II) produced by endophytic bacteria Paenibacillus polymyxa LY214 (Paenibacillus polymyxa LY214);
图3是喜树碱标准品(I)和喜树内生细菌多粘类芽孢杆菌LY214(Paenibacillus polymyxa LY214)所产喜树碱质谱图;Figure 3 is the mass spectrum of camptothecin standard (I) and camptothecin produced by endophytic bacteria Paenibacillus polymyxa LY214 (Paenibacillus polymyxa LY214);
图4是产喜树碱的喜树内生细菌多粘类芽孢杆菌LY214(Paenibacillus polymyxa LY214)的SBA固体培养(A)和SBA液体培养(B)图;Figure 4 is the SBA solid culture (A) and SBA liquid culture (B) diagrams of camptothecin-producing endophytic bacteria Paenibacillus polymyxa LY214 (Paenibacillus polymyxa LY214);
图5是产喜树碱的喜树内生细菌多粘类芽孢杆菌LY214(Paenibacillus polymyxa LY214)的系统发育树图。Fig. 5 is a phylogenetic tree diagram of the camptothecin-producing endophytic bacterium Paenibacillus polymyxa LY214 (Paenibacillus polymyxa LY214).
具体实施方式Detailed ways
下面结合附图,对本发明的优选实施例作进一步描述。The preferred embodiments of the present invention will be further described below in conjunction with the accompanying drawings.
实施例1:从喜树中分离及筛选产喜树碱内生菌Example 1: Isolation and screening of camptothecin-producing endophytes from camptothecin
从喜树中分离内生细菌菌株Paenibacillus polymyxa LY214。Isolation of endophytic bacterial strain Paenibacillus polymyxa LY214 from Campylodon japonica.
1、试验材料1. Test material
1.1植物材料:1.1 Plant material:
选取正常健康生长的喜树器官或组织作为植物材料,如树根、树皮、果实、树叶、树枝等部位。Select the organs or tissues of philodendron that grow normally and healthy as plant materials, such as tree roots, bark, fruits, leaves, branches and other parts.
采集植物材料按照常规操作切段、清洗、消毒。本实施方式采用自来水彻底冲洗除去尘土等杂物,用无菌手术刀将植物材料切成10mm×10mm小块,先后用浓度为75%乙醇浸泡5min,10%次氯酸钠溶液浸泡5min,1%Triton浸泡5min,无菌水冲洗5次,每次1min,最后用无菌滤纸吸除喜树各组织部位的表面水分,待用。The collected plant materials were cut into sections, cleaned and disinfected according to routine operations. In this embodiment, tap water is used to thoroughly rinse to remove dust and other sundries, and the plant material is cut into small pieces of 10mm×10mm with a sterile scalpel, and soaked in 75% ethanol for 5 minutes, 10% sodium hypochlorite solution for 5 minutes, and 1% Triton. 5min, rinse with sterile water 5 times, 1min each time, and finally use sterile filter paper to absorb the surface moisture of each tissue part of Campylocarpus chinensis, and set aside.
1.2培养基:1.2 Medium:
5%水琼脂固体培养基:琼脂含量为5%(W/W),用水配制,不添加任何营养成分。5% water agar solid medium: the agar content is 5% (W/W), prepared with water, without adding any nutrients.
沙氏琼脂固体培养基(SBA固体培养基):蛋白胨10g/l,葡萄糖40g/l,pH5.6,121℃高压灭菌30min。Sabouraud agar solid medium (SBA solid medium): peptone 10g/l, glucose 40g/l, pH5.6, autoclaved at 121°C for 30min.
2、植物材料接种培养2. Plant material inoculation and cultivation
将准备好的植物材料按常规无菌操作方法接种培养。The prepared plant material was inoculated and cultivated according to conventional aseptic operation methods.
将准备好的喜树植物材料沿中轴切开,将新切面接种到5%水琼脂固体培养基上,28℃±2℃恒温培养2~3周;待植物材料新切面长出菌丝后,挑取菌丝移至SBA培养基上继续培养,条件28℃±2℃恒温培养;最后经纯化后得到内生细菌菌株Paenibacillus polymyxa LY214。Cut the prepared camphor tree plant material along the central axis, inoculate the new cut surface on 5% water agar solid medium, and cultivate at a constant temperature of 28°C±2°C for 2 to 3 weeks; after the new cut surface of the plant material grows hyphae , pick the hyphae and move them to the SBA medium to continue culturing at a constant temperature of 28°C±2°C; finally, the endophytic bacterial strain Paenibacillus polymyxa LY214 was obtained after purification.
将菌株Paenibacillus polymyxa LY214保藏于SBA固体斜面培养基上。The strain Paenibacillus polymyxa LY214 was preserved on SBA solid slant medium.
实施例二Embodiment two
利用喜树内生细菌菌株Paenibacillus polymyxa LY214获得喜树碱。Camptothecin was obtained from the camptothecin endophytic bacteria strain Paenibacillus polymyxa LY214.
1、培养基与萃取溶剂1. Culture medium and extraction solvent
培养基:沙氏液体培养基(SBA液体培养基),组分同实施例一中SBA固体培养基,但不加入琼脂。Culture medium: Sabouraud liquid medium (SBA liquid medium), the components are the same as the SBA solid medium in Example 1, but no agar is added.
萃取溶剂:氯仿-甲醇混合溶剂(V/V=4:1)Extraction solvent: chloroform-methanol mixed solvent (V/V=4:1)
2、喜树碱提取方法2. Extraction method of camptothecin
2.1发酵培养2.1 Fermentation culture
将实施例一中保藏的菌株Paenibacillus polymyxa LY214依照常规方法制备得到种子液。将50ml种子液接种到500ml SBA液体培养基中,28±2℃,摇床160±20rpm,培养8~15d,得到发酵混合物。The bacterial strain Paenibacillus polymyxa LY214 preserved in Example 1 was prepared according to conventional methods to obtain seed liquid. Inoculate 50ml of seed solution into 500ml of SBA liquid medium, culture at 28±2°C, shaker 160±20rpm, for 8-15 days, and obtain the fermentation mixture.
2.2制备发酵提取物2.2 Preparation of fermented extract
将发酵混合物经4000rpm离心15min,过滤,分别收集滤液和菌丝体。The fermentation mixture was centrifuged at 4000rpm for 15min, filtered, and the filtrate and mycelia were collected respectively.
所得滤液用等体积氯仿-甲醇混合溶剂萃取,有机相于40℃减压浓缩得到发酵液提取物;加入一定量萃取溶剂溶解,经针头滤器过滤得到喜树碱粗提物。The obtained filtrate was extracted with an equal volume of chloroform-methanol mixed solvent, and the organic phase was concentrated under reduced pressure at 40°C to obtain a fermentation broth extract; a certain amount of extraction solvent was added to dissolve, and filtered through a needle filter to obtain a crude camptothecin extract.
所得菌丝体烘干研磨破碎,甲醇浸泡过夜,等体积氯仿-甲醇混合溶剂萃取,有机相于40℃减压浓缩得到菌丝体提取物;加入一定量萃取溶剂溶解,经针头滤器过滤得到喜树碱粗提物。The obtained mycelium was dried, ground and crushed, soaked in methanol overnight, extracted with an equal volume of chloroform-methanol mixed solvent, and the organic phase was concentrated under reduced pressure at 40°C to obtain the mycelium extract; a certain amount of extraction solvent was added to dissolve, and filtered through a needle filter to obtain the mycelium extract. Tree alkaloid crude extract.
实施例三Embodiment Three
利用喜树内生细菌菌株Paenibacillus polymyxa LY214获得喜树碱,其与实施例二相同之处不再重复,其不同之处在于在发酵培养前增加种子液制备步骤,包括菌种活化与种子培养。Camptothecin was obtained by using the camptothecin endophytic bacterial strain Paenibacillus polymyxa LY214, which is the same as Example 2 and will not be repeated. The difference is that the seed liquid preparation step is added before the fermentation culture, including strain activation and seed culture.
菌种活化:将实施例一中保藏的菌株Paenibacillus polymyxa LY214接种SBA固体培养基上进行活化,培养5~7d,得活化菌种;Activation of strains: the bacterial strain Paenibacillus polymyxa LY214 preserved in Example 1 was inoculated on SBA solid medium for activation, and cultured for 5-7 days to obtain activated strains;
种子培养:将经活化的菌种接入50ml SBA液体培养基中,28±2℃,摇床160±20rpm,培养2~3d,制得种子液。Seed culture: Inoculate the activated strain into 50ml SBA liquid medium, culture at 28±2°C, shaker 160±20rpm, for 2-3 days to obtain the seed solution.
试验例一Test example one
菌株Paenibacillus polymyxa LY214发酵物的HPLC-DAD检测。HPLC-DAD detection of the fermentation product of strain Paenibacillus polymyxa LY214.
采用HPLC-DAD分别检测实施例二或实施例三得到的发酵液提取物与菌丝体提取物。The fermentation broth extract and the mycelia extract obtained in Example 2 or Example 3 were respectively detected by HPLC-DAD.
HPLC-DAD分析检测条件:Altima column C18柱(5μm,250mm×4.6mm),流动相A:甲醇,流动相B:水+0.1%甲酸,柱温:35℃,流速:1ml/min;进样量:20μl;检测器:二极管阵列(DAD);检测波长:254nm、266nm、373nm;梯度洗脱程序如表2所示:HPLC-DAD analysis and detection conditions: Altima column C18 column (5μm, 250mm×4.6mm), mobile phase A: methanol, mobile phase B: water + 0.1% formic acid, column temperature: 35°C, flow rate: 1ml/min; Sample volume: 20 μl; detector: diode array (DAD); detection wavelength: 254nm, 266nm, 373nm; gradient elution program as shown in Table 2:
表2HPLC-DAD梯度洗脱条件Table 2 HPLC-DAD gradient elution conditions
在上述条件下,喜树碱标准品的保留时间为:25.39min;内生菌株Paenibacillus polymyxa LY214发酵液提取物中喜树碱的保留时间为:25.38min。图1所示为喜树碱标准品(I)与Paenibacillus polymyxa LY214菌株发酵液提取物(II)的HPLC-DAD图;图2所示为喜树碱标准品(I)与Paenibacillus polymyxa LY214发酵液提取物(II)所产喜树碱(II)的紫外波谱图。HPLC-DAD结果显示,菌丝体提取物中仅含痕量喜树碱。Under the above conditions, the retention time of camptothecin standard was 25.39min; the retention time of camptothecin in the fermentation broth extract of endophytic strain Paenibacillus polymyxa LY214 was 25.38min. Figure 1 shows the HPLC-DAD diagram of camptothecin standard (I) and Paenibacillus polymyxa LY214 strain fermentation broth extract (II); Figure 2 shows the camptothecin standard (I) and Paenibacillus polymyxa LY214 fermentation broth The UV spectrum of camptothecin (II) produced by the extract (II). The results of HPLC-DAD showed that only traces of camptothecin were contained in the mycelia extract.
试验例二Test example two
产喜树碱内生菌菌株Paenibacillus polymyxa LY214的HPLC-DAD-MS确证。HPLC-DAD-MS confirmation of camptothecin-producing endophytic strain Paenibacillus polymyxa LY214.
将经试验例一验证的含有与喜树碱标准品保留时间和紫外波谱图一致的发酵液提取物进行液质联用分析,确证该产物为喜树碱。图3所示为喜树碱标准品(I)与内生菌株Paenibacillus polymyxa LY214所产喜树碱(II)的HPLC-MS图。The fermentation broth extract verified by Test Example 1 containing the same retention time and ultraviolet spectrum as the camptothecin standard product was analyzed by liquid chromatography-mass spectrometry, and the product was confirmed to be camptothecin. Figure 3 shows the HPLC-MS images of camptothecin standard (I) and camptothecin (II) produced by the endophytic strain Paenibacillus polymyxa LY214.
试验例三Test example three
产喜树碱内生真菌菌株Paenibacillus polymyxa LY214的分类学鉴定,形态学鉴定部分。Taxonomic identification of the camptothecin-producing endophytic fungal strain Paenibacillus polymyxa LY214, part of the morphological identification.
将内生菌株Paenibacillus polymyxa LY214接种到SBA琼脂培养基,28±2℃培养,观察菌落形态。菌株Paenibacillus polymyxa LY214在SBA培养基上生长迅速,菌落薄,半透明到不透明,边缘不整呈阿米巴状,中间略凸起,菌落粘着在培养基表面(图4A);The endophytic strain Paenibacillus polymyxa LY214 was inoculated on SBA agar medium, cultured at 28±2°C, and the colony morphology was observed. The strain Paenibacillus polymyxa LY214 grew rapidly on SBA medium, with thin colonies, translucent to opaque, irregular amoeba-like edges, slightly raised in the middle, and colonies adhered to the surface of the medium (Figure 4A);
将内生菌株Paenibacillus polymyxa LY214接种到沙氏液体培养基,28±2℃,160±20rpm摇床培养,观察菌落形态。液体培养特征为培养1-2天菌液澄清,培养3-4天时菌体量增多,培养液浑浊。(图4B)。The endogenous strain Paenibacillus polymyxa LY214 was inoculated into Sabouraud liquid medium, cultured on a shaker at 28±2°C, 160±20rpm, and the colony morphology was observed. The characteristics of liquid culture are that the bacterial liquid is clear after 1-2 days of culture, and the amount of bacteria increases after 3-4 days of culture, and the culture liquid is turbid. (Fig. 4B).
试验例四Test example four
产喜树碱内生细菌菌株Paenibacillus polymyxa LY214的分类学鉴定,分子生物学鉴定部分。Taxonomic identification of camptothecin-producing endophytic bacterial strain Paenibacillus polymyxa LY214, part of molecular biology identification.
如实施例二或三所述制得菌株Paenibacillus polymyxa LY214发酵液,将发酵混合物经4000rpm离心15min,过滤,收集菌丝体;用灭菌去离子水冲洗菌丝体2次,离心去上清液;按照细菌基因组DNA抽提试剂盒(E.Z.N.A.TM Bacterial DNA Kit)的操作说明进行菌株PaenibacilluspolymyxaLY214的基因组DNA提取;基因组DNA质量和浓度用UV-1100D紫外分光光度计(MAPADA,中国)检测,OD260/280为1.9,DNA质量佳。Prepare the fermentation broth of bacterial strain Paenibacillus polymyxa LY214 as described in Example 2 or 3, centrifuge the fermentation mixture for 15 min at 4000 rpm, filter, and collect the mycelium; wash the mycelium twice with sterilized deionized water, and centrifuge to remove the supernatant Genomic DNA of strain Paenibacillus polymyxaLY214 was extracted according to the operating instructions of the bacterial genomic DNA extraction kit (E.Z.N.A.TM Bacterial DNA Kit); the quality and concentration of genomic DNA were detected by UV-1100D ultraviolet spectrophotometer (MAPADA, China), OD260/280 1.9, DNA quality is good.
以获得的菌株Paenibacillus polymyxa LY214基因组DNA为模板,5’-AGAGTTTGATCCTGGCTCAG-3’为正向引物(SEQ ID NO.2),5’-GGTTACCTTGTTACGACTT-3’为反向引物(SEQ ID NO.3);PCR反应体系及反应条件:25μl2×Master Mix,ddH2O20μl,正向、反向引物各2μl,DNA模板1μl;反应条件依试剂盒所列为94℃,3min变性后进入循环,循环参数为:94℃,30sec;55℃,30sec;65℃,1min;35个循环后于65℃再延伸5min,进行PCR扩增,获得16S rDNA扩增产物。The obtained strain Paenibacillus polymyxa LY214 genomic DNA was used as a template, 5'-AGAGTTTGATCCTGGCTCAG-3' was used as a forward primer (SEQ ID NO.2), and 5'-GGTTACCTTGTTACGACTT-3' was used as a reverse primer (SEQ ID NO.3); PCR reaction system and reaction conditions: 25 μl 2×Master Mix, 20 μl ddH 2 O, 2 μl each of forward and reverse primers, 1 μl DNA template; the reaction conditions are listed in the kit as 94°C, 3 minutes of denaturation, and then cycle. The cycle parameters are: 94°C, 30sec; 55°C, 30sec; 65°C, 1min; after 35 cycles, extend at 65°C for 5min for PCR amplification to obtain 16S rDNA amplification products.
将PCR产物在1%琼脂糖凝胶上进行电泳分离,在1500bp附近出现明显的目的扩增片段,表明已成功从Paenibacillus polymyxa LY214菌株扩增获得16S rDNA。采用琼脂糖凝胶回收试剂盒(DP209,天根,中国)回收纯化该目的片段;采用pGM-T克隆试剂盒(天根,中国),按照使用说明将回收的目的片段与pGM-T载体进行连接;将连接产物转化进入E.coli DH5α;进行蓝白斑筛选;挑选单克隆并培养在加有氨苄抗性的液体LB培养基中37℃,180rpm培养过夜;提取质粒,凝胶电泳检测、PCR验证正确的片段送上海美吉生物医药科技有限公司进行测序,碱基序列结果见SEQ ID NO.1。The PCR product was separated by electrophoresis on 1% agarose gel, and an obvious target amplified fragment appeared around 1500bp, indicating that 16S rDNA had been successfully amplified from Paenibacillus polymyxa LY214 strain. Agarose gel recovery kit (DP209, Tiangen, China) was used to recover and purify the target fragment; using pGM-T cloning kit (Tiangen, China), the recovered target fragment was combined with pGM-T vector according to the instruction Ligation; transform the ligation product into E.coli DH5α; perform blue-white screening; select a single clone and culture it in liquid LB medium with ampicillin resistance at 37°C and 180rpm overnight; extract the plasmid, detect it by gel electrophoresis, and PCR The correct fragments were verified and sent to Shanghai Meiji Biomedical Technology Co., Ltd. for sequencing. The base sequence results are shown in SEQ ID NO.1.
将菌株LY214的16S rDNA序列在NCBI数据库(http://blast.ncbi.nlm.nih.gov/Blast)中应用BLAST分析进行同源性比较,该菌株16S rDNA序列与同源性比较得到的序列相似性高的序列相似性都达到了99%以上,应用MEGA4.0软件中邻接法构建系统发育树,如图5所示。由此确定Paenibacillus polymyxa LY214菌株的分类地位,确定内生细菌Paenibacillus polymyxa LY214为多粘类芽孢杆菌Paenibacilluspolymyxa。The 16S rDNA sequence of strain LY214 was compared with BLAST analysis in the NCBI database (http://blast.ncbi.nlm.nih.gov/Blast) for homology, and the 16S rDNA sequence of the strain was compared with the sequence obtained by homology Sequences with high similarity have a similarity of more than 99%. The phylogenetic tree was constructed using the neighbor-joining method in the MEGA4.0 software, as shown in Figure 5. Therefore, the taxonomic status of Paenibacillus polymyxa LY214 strain was determined, and the endophytic bacterium Paenibacillus polymyxa LY214 was identified as Paenibacillus polymyxa.
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| US11064703B2 (en) | 2014-08-04 | 2021-07-20 | Basf Se | Antifungal Paenibacillus strains, fusaricidin-type compounds, and their use |
| AU2015299053B2 (en) * | 2014-08-04 | 2021-10-21 | Basf Se | Antifungal Paenibacillus strains, fusaricidin-type compounds, and their use |
| US12258554B2 (en) | 2014-08-04 | 2025-03-25 | Basf Se | Antifungal Paenibacillus strains, fusaricidin-type compounds, and their use |
| US11185078B2 (en) | 2016-02-09 | 2021-11-30 | Basf Se | Mixtures and compositions comprising Paenibacillus strains or metabolites thereof and other biopesticides |
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