CN117391955A - Convex set projection super-resolution reconstruction method based on multi-frame optical coherence tomography images - Google Patents
Convex set projection super-resolution reconstruction method based on multi-frame optical coherence tomography images Download PDFInfo
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Abstract
Description
技术领域Technical field
本发明属于光学医用图像处理技术,具体涉及一种基于多帧光学相干层析扫描来构建超分辨率影像的方法。The invention belongs to optical medical image processing technology, and specifically relates to a method of constructing super-resolution images based on multi-frame optical coherence tomography scanning.
背景技术Background technique
光学相干层析扫描((Optical Coherence Tomography--OCT))由于具有非侵入性、无接触和应用于活体内部成像的特点,作为一种检测手段已广泛应用于眼科临床对视网膜疾病诊断。OCT获得的视网膜B-scan图像为临床医生提供各个细胞层的厚度和形态信息,对于视网膜形态改变明显的病症的检出和评估具有重要意义。Optical coherence tomography (Optical Coherence Tomography--OCT) has been widely used as a detection method in ophthalmology clinical diagnosis of retinal diseases due to its characteristics of non-invasive, non-contact and application in internal imaging of living bodies. The retinal B-scan image obtained by OCT provides clinicians with thickness and morphological information of each cell layer, which is of great significance for the detection and evaluation of diseases with obvious changes in retinal morphology.
临床诊断通常需要高分辨率的OCT图像,以准确反映复杂的膜层病理结构。虽然OCT图像微米级别的分辨率已经在临床影像学中发挥了重要作用,如果进一步提高OCT图像的分辨率就可以提供更多膜层的微观结构信息,在有助于医生实现准确诊断的同时,揭示特定疾病的病理表现,大幅度推动临床医学诊断的发展。Clinical diagnosis usually requires high-resolution OCT images to accurately reflect the complex pathological structure of the membrane layer. Although the micron-level resolution of OCT images has played an important role in clinical imaging, if the resolution of OCT images is further improved, it can provide more microstructure information of the film layer, which will help doctors achieve accurate diagnosis. Reveal the pathological manifestations of specific diseases and greatly promote the development of clinical medical diagnosis.
OCT系统成像主要依靠来自成像背景不同区域的背向散射光和参考光束干涉形成的一维干涉信号;通过解调一维干涉信号形成A-scan图像,在空间上扫描形成的多个A-scan图像拼接,形成二维B-scan图像。因此其轴向分辨率取决于干涉光源的中心波长和光谱带宽,其横向分辨率与聚焦物镜的数值孔径和投射到待测物表面光斑的尺寸有关。所以研究人员通过提升硬件配置,包括使用超宽带光源和复杂的扫描光束聚焦光学系统等方式来提升OCT系统的成像分辨率。但该方法受到衍射极限和激光技术的限制,改进系统硬件对分辨率的提升程度有限,并且复杂的光学系统和光源加大了OCT系统的制造成本,不能广泛应用于市场和医疗一线。OCT system imaging mainly relies on the one-dimensional interference signal formed by the interference of backscattered light from different areas of the imaging background and the reference beam; an A-scan image is formed by demodulating the one-dimensional interference signal, and multiple A-scans formed by scanning in space The images are stitched together to form a two-dimensional B-scan image. Therefore, its axial resolution depends on the central wavelength and spectral bandwidth of the interference light source, and its lateral resolution is related to the numerical aperture of the focusing objective lens and the size of the light spot projected onto the surface of the object to be measured. Therefore, researchers have improved the imaging resolution of the OCT system by improving hardware configuration, including using ultra-broadband light sources and complex scanning beam focusing optical systems. However, this method is limited by the diffraction limit and laser technology. Improving the system hardware can only improve the resolution to a limited extent. Moreover, the complex optical system and light source increase the manufacturing cost of the OCT system, and it cannot be widely used in the market and medical front lines.
相比于对硬件系统进行改进,通过重建OCT图像来提升OCT图像分辨率的方法,因其能够以更小的成本提升图像质量、不受衍射极限限制的特点,在近年受到广泛推崇。目前已有的超分辨率重建方法可以分为三类:(1)基于单图像的超分辨率重建:(2)基于多图像的超分辨率重建;(3)基于深度学习的超分辨率重建。其中,第一类需要依据光学系统的参数计算点扩散函数(PSF),然后再利用计算出的点扩散函数进行反卷积操作,获得清晰图像。但是OCT的原始数据在解调时因为自相关项干扰存在大量散斑噪声,将对含有噪声的图像进行反卷积会产生大量的伪影。并且成熟的OCT系统复杂度高,光学参数受专利保护难以获得,计算点扩散函数难度较大。而第三类(基于深度学习的超分辨率重建)方法虽然可以高效率生成清晰度更高的图像,但其依赖于正确的低分辨率和高分辨率映射数据集,并且其对分辨率的提升倍数有限,生成的高分辨率图像的真实性降低,不可应用于医学图像领域。因此第二类提出的基于多图像的超分辨率重建(视网膜OCT图像)的方案,可减轻基于单图像方案的点扩散函数估计错误对重建结果的影响。此外,多图像方法对于低分辨率图像噪声具有鲁棒性。当某帧低分辨率图像存在噪声或者信息较少时,其他图像仍然可以提供有效的信息来重建丢失的细节,从而提高重建结果的鲁棒性。Compared with improving the hardware system, the method of improving the resolution of OCT images by reconstructing OCT images has been widely praised in recent years because it can improve image quality at a lower cost and is not limited by the diffraction limit. Existing super-resolution reconstruction methods can be divided into three categories: (1) super-resolution reconstruction based on a single image: (2) super-resolution reconstruction based on multiple images; (3) super-resolution reconstruction based on deep learning . Among them, the first type requires calculating the point spread function (PSF) based on the parameters of the optical system, and then using the calculated point spread function to perform a deconvolution operation to obtain a clear image. However, the original OCT data contains a large amount of speckle noise due to autocorrelation term interference during demodulation, and deconvolution of the noisy image will produce a large number of artifacts. Moreover, mature OCT systems are highly complex, optical parameters are difficult to obtain due to patent protection, and it is difficult to calculate point spread functions. Although the third category (super-resolution reconstruction based on deep learning) methods can efficiently generate higher-definition images, they rely on correct low-resolution and high-resolution mapping data sets, and their resolution is limited. The improvement factor is limited, the authenticity of the generated high-resolution images is reduced, and it cannot be applied in the field of medical images. Therefore, the second type of scheme proposed based on multi-image super-resolution reconstruction (retina OCT image) can reduce the impact of point spread function estimation errors based on single-image schemes on the reconstruction results. Furthermore, multi-image methods are robust to low-resolution image noise. When a certain low-resolution image contains noise or less information, other images can still provide effective information to reconstruct the lost details, thus improving the robustness of the reconstruction results.
因此基于多图像超分辨率重建方法的优点是不依赖于数据集,可扩展到更多的应用场景,并且可以应对各种场景下OCT图像超分辨率重建的需求。Therefore, the advantage of the multi-image super-resolution reconstruction method is that it does not depend on the data set, can be extended to more application scenarios, and can meet the needs of OCT image super-resolution reconstruction in various scenarios.
一项美国(US5978109)专利中公开了一种超分辨率扫描光学装置,提出将来自相干光源的光以细斑的形式成像在共轭面上成像的装置,以及以细斑形式在共轭面上扫描的装置。相干光源由具有相位相反的第一光源和第二光源组成。第一光源的像主瓣的侧面幅值被第二光源主瓣的幅值抵消,从而减小第一光源的像的主瓣的宽度。以此获得小于衍射极限的超分辨率,而不形成裂隙状或环形开口。但该技术特征的缺陷是,不能同时提高横向和轴向分辨率,并且需要用到两个相位严格相反的光源,实现成本高、技术难度大。A US patent (US5978109) discloses a super-resolution scanning optical device, which proposes a device for imaging light from a coherent light source in the form of fine spots on the conjugate surface, and a device for imaging the conjugate surface in the form of fine spots. Scan the device. The coherent light source consists of a first light source and a second light source with opposite phases. The side amplitude of the main image lobe of the first light source is offset by the amplitude of the main lobe of the second light source, thereby reducing the width of the main image lobe of the first light source. This achieves super-resolution below the diffraction limit without forming slit-like or annular openings. However, the disadvantage of this technical feature is that it cannot improve the lateral and axial resolution at the same time, and it requires the use of two light sources with strictly opposite phases, which is costly and technically difficult to implement.
一项美国(US5994690)专利中公开了一种改进的OCT成像系统,提出一种从干涉仪输出干涉信号估计脉冲响应的方法,脉冲响应可以从相互相关和自相关数据中获得。分别通过对自相关数据和互相关数据进行傅里叶变换,获得自相关功率谱和互相关功率谱。取交叉功率谱与自功率谱之比,得到OCT与组织的相互作用线性平移不变系统的传递函数,通过对传递函数进行傅里叶反变换获得光脉冲响应。将相干解调与反卷积技术结合使用,解析样品中间隔很近的反射点,提高OCT系统的轴向分辨率。但该技术特征的缺陷是,该系统及方法不能同时提升OCT系统的轴向和横向分辨率,并且其对功率谱的测量或估计受到光学元件、测量电子设备、数据采集系统和各种噪声源的特性的影响,进而影响对于传递函数的估计和计算,因此不能保证重建图像的清晰度。A US patent (US5994690) discloses an improved OCT imaging system and proposes a method for estimating impulse response from the interferometer output interference signal. The impulse response can be obtained from cross-correlation and autocorrelation data. The autocorrelation power spectrum and cross-correlation power spectrum are obtained by performing Fourier transform on the autocorrelation data and cross-correlation data respectively. Taking the ratio of the cross power spectrum and the autopower spectrum, the transfer function of the linear translation invariant system of the interaction between OCT and tissue is obtained, and the light pulse response is obtained by performing inverse Fourier transform on the transfer function. Coherent demodulation and deconvolution technology are combined to resolve closely spaced reflection points in the sample and improve the axial resolution of the OCT system. However, the disadvantage of this technical feature is that the system and method cannot simultaneously improve the axial and lateral resolution of the OCT system, and its measurement or estimation of the power spectrum is affected by optical components, measurement electronic equipment, data acquisition systems and various noise sources. characteristics, which in turn affects the estimation and calculation of the transfer function, so the clarity of the reconstructed image cannot be guaranteed.
一项中国(CN105976321)专利中公开了一种光学相干断层图像超分辨率重建方法和装置。提出将三维低分辨率OCT图像在时间维度划分为多个相似帧组,并将多个相似帧组中的每帧OCT图像分别划分为多个膜层。将每帧OCT图像划分为多个重叠的图像块,并在每个图像块对应的膜层内确定每个图像块的多个相似图像块。根据确定的每个图像块的多个相似图像块,得到每个图像块的平均图像块。通过预先构建的高-低分辨率字典对以及相应的稀疏系数的映射方程,对得到的每个图像块的平均图像块进行处理,得到三维OCT图像的高分辨率图像。通过构建多组相互匹配的高-低分辨率OCT图像作为训练样本,提高重构超分辨率图像的精度。但该技术特征的缺陷是,其重构精度需要依靠大量样本的高-低分辨率图像作为训练集,该方法容易受个体差异性影响使得准确率下降,并且在计算平均图像块的过程中使用的相似图像块为膜层内部图像块。虽然可以抑制重建噪声,但相应地也会弱化边缘信息,减少重建图像中的高频成分。A Chinese patent (CN105976321) discloses an optical coherence tomography image super-resolution reconstruction method and device. It is proposed to divide the three-dimensional low-resolution OCT image into multiple similar frame groups in the time dimension, and divide each OCT image in the multiple similar frame groups into multiple film layers. Each frame of OCT image is divided into multiple overlapping image blocks, and multiple similar image blocks of each image block are determined within the film layer corresponding to each image block. Based on the determined multiple similar image blocks of each image block, the average image block of each image block is obtained. Through the mapping equation of the pre-constructed high-low resolution dictionary pair and the corresponding sparse coefficients, the average image block of each image block obtained is processed to obtain a high-resolution image of the three-dimensional OCT image. By constructing multiple sets of mutually matched high-low resolution OCT images as training samples, the accuracy of reconstructed super-resolution images is improved. However, the disadvantage of this technical feature is that its reconstruction accuracy relies on a large number of samples of high-low resolution images as training sets. This method is easily affected by individual differences, causing the accuracy to decrease, and is used in the process of calculating the average image block. The similar image blocks are the internal image blocks of the film layer. Although the reconstruction noise can be suppressed, the edge information will be weakened accordingly and the high-frequency components in the reconstructed image will be reduced.
一项中国(CN116128728)专利中公开了一种基于等变学习和先验引导的OCT超分辨重建方法和装置。提出首先根据构建的OCT成像模型,构建待训练网络的第一约束函数;基于等变学习构建待训练网络的第二约束函数;基于被测组织的解剖学先验知识构建待训练网络的第三约束函数;使用采集到的含噪低分辨图像作为训练集,基于所述以上三个约束函数对所述待训练神经网络进行训练;基于训练后的网络对待重建的OCT图像进行高信噪比超分辨率重建。利用等变学习实现自监督的超分辨率重建,利用被测组织的解剖学先验知识实现自监督去噪,使得该网络可以同时实现OCT图像重建的超分辨和降噪两种功能。但该技术特征的缺陷是,基于单张图像的自监督深度学习方法和先验知识进行重建,图像分辨率的提升倍数有限,并且重建高分辨率图像的数据真实度下降,易受错误数据引导,造成误诊率上升。A Chinese patent (CN116128728) discloses an OCT super-resolution reconstruction method and device based on equivariant learning and prior guidance. It is proposed that the first constraint function of the network to be trained is constructed based on the constructed OCT imaging model; the second constraint function of the network to be trained is constructed based on equivariant learning; and the third constraint function of the network to be trained is constructed based on the anatomical prior knowledge of the tissue being measured. Constraint function; use the collected noisy low-resolution images as a training set, and train the neural network to be trained based on the above three constraint functions; perform high signal-to-noise ratio super-operation on the OCT image to be reconstructed based on the trained network resolution reconstruction. Equivariant learning is used to achieve self-supervised super-resolution reconstruction, and the anatomical prior knowledge of the tested tissue is used to achieve self-supervised denoising, so that the network can simultaneously achieve both super-resolution and noise reduction functions for OCT image reconstruction. However, the disadvantage of this technical feature is that the reconstruction is based on the self-supervised deep learning method and prior knowledge of a single image. The image resolution is limited in the improvement factor, and the data authenticity of the reconstructed high-resolution image is reduced, and it is susceptible to erroneous data guidance. , causing the misdiagnosis rate to increase.
一项中国(CN116630154)专利中公开了一种OCT图像的反卷积超分辨重建方法及装置。提出通过傅里叶变换得到低分辨率的OCT图像作为输入的原始数据,构建稀疏连续先验反卷积计算的优化函数,进行重建优化的初始设置,之后进行迭代训练,引入中间变量进行迭代计算。在完成优化迭代后,输出最终的反卷积超分辨重建OCT图像。该方法能够避免反褶积迭代重建产生的伪影,有效提升重建图像的分辨率。但该技术特征的缺陷是,在构建优化函数的过程中使用的点扩散函数(PSF)为估计值,而OCT系统其成像原理为扫描干涉系统,获得的信号为一维信号,因此理论上不存在可用于重建计算的二维PSF。对于点扩散函数的估计不准确,可能会造成重建图像存在伪影。并且基于单图像的反卷积重建,受信息量限制,其重建高分辨率图像真实度下降。A Chinese patent (CN116630154) discloses a deconvolution super-resolution reconstruction method and device for OCT images. It is proposed to obtain low-resolution OCT images through Fourier transform as the input original data, construct an optimization function for sparse continuous prior deconvolution calculation, perform initial settings for reconstruction optimization, and then conduct iterative training and introduce intermediate variables for iterative calculations. . After completing the optimization iteration, the final deconvolution super-resolution reconstructed OCT image is output. This method can avoid artifacts caused by deconvolution iterative reconstruction and effectively improve the resolution of the reconstructed image. However, the disadvantage of this technical feature is that the point spread function (PSF) used in the process of constructing the optimization function is an estimated value, and the imaging principle of the OCT system is a scanning interference system, and the obtained signal is a one-dimensional signal, so it is not theoretically possible. There are two-dimensional PSFs available for reconstruction calculations. Inaccurate estimation of the point spread function may cause artifacts in the reconstructed image. And the deconvolution reconstruction based on a single image is limited by the amount of information, and the authenticity of the reconstructed high-resolution image decreases.
综上所述,通过改进硬件配置的方法来提升OCT系统分辨率存在着成本高、系统复杂等问题。相对于改进硬件系统,通过图像重建的方法提升OCT系统的分辨率具有更多优势,但存在的以下问题限制了其在临床领域的广泛应用:(1)临床使用的OCT系统集成度高,参数差异较大且难以获得,导致计算点扩散函数难度大,复杂度高;(2)B-scan图像本质上不存在可用于重建计算的二维点扩散函数,因此对于点扩散函数的不准确估计会导致重建结果产生伪影,从而降低图像质量;(3)基于单图像和深度学习的重建方法,依赖于硬件系统参数和正确的高-低分辨率图像对,部分缺失信息会导致重建图像真实度下降,造成临床误诊率上升;(4)基于单图像和深度学习的重建方法,重建分辨率倍数受数据量和模型结构限制而存在上限,无法恢复更多的细节信息。In summary, improving the resolution of the OCT system by improving hardware configuration has problems such as high cost and system complexity. Compared with improving the hardware system, improving the resolution of the OCT system through image reconstruction has more advantages, but the following problems limit its wide application in the clinical field: (1) The clinically used OCT system is highly integrated and has poor parameters. The differences are large and difficult to obtain, making it difficult and complex to calculate the point spread function; (2) B-scan images essentially do not have a two-dimensional point spread function that can be used for reconstruction calculations, so the point spread function is inaccurately estimated. It will cause artifacts in the reconstruction results, thereby reducing the image quality; (3) Reconstruction methods based on single images and deep learning rely on hardware system parameters and correct high-low resolution image pairs. Some missing information will cause the reconstructed image to be unrealistic. The accuracy decreases, causing the clinical misdiagnosis rate to increase; (4) For reconstruction methods based on single images and deep learning, the reconstruction resolution multiple is limited by the amount of data and model structure, and there is an upper limit, making it impossible to recover more detailed information.
针对上述问题,本发明提出了基于多帧OCT图像的凸集投影超分辨率重建方法,不需要对硬件系统参数进行计算,无需构建对应的高-低分辨率数据集。其重建倍数取决于基础图像帧数,因而理论上可以突破目前超分辨倍数的上限,获得清晰真实的高分辨率图像。In response to the above problems, the present invention proposes a convex set projection super-resolution reconstruction method based on multi-frame OCT images, which does not require calculation of hardware system parameters and construction of corresponding high-low resolution data sets. Its reconstruction factor depends on the number of basic image frames, so it can theoretically break through the upper limit of the current super-resolution factor and obtain clear and realistic high-resolution images.
发明内容Contents of the invention
本发明的目的是提出一种基于多帧光学相干层析图像的凸集投影超分辨率重建方法,通过融合多帧低分辨率图像中所包含的不同细节信息,重建高分辨率图像中的高频信息,由此获得清晰的高分辨率图像。文中OCT(Optical Coherence Tomography)的中文释义是光学相干层析扫描。The purpose of this invention is to propose a convex set projection super-resolution reconstruction method based on multi-frame optical coherence tomography images, which reconstructs high-resolution images in high-resolution images by fusing different detailed information contained in multi-frame low-resolution images. frequency information to obtain clear, high-resolution images. The Chinese meaning of OCT (Optical Coherence Tomography) in the article is optical coherence tomography.
本发明提出的方案包括以下步骤:The solution proposed by the present invention includes the following steps:
(1)采集OCT断层扫描低分辨率图像序列,改变OCT系统的扫描模式,使其在短时间内扫描同一截面获得多帧B超扫描(B-scan)图像,任选其中一帧图像作为基准帧,其他图像作为参考帧,用于计算重建高分辨率图像。(1) Collect OCT tomography low-resolution image sequences, change the scanning mode of the OCT system, and scan the same section in a short time to obtain multiple frames of B-scan images. Select one of the frames as the benchmark. Frames, other images are used as reference frames for calculating and reconstructing high-resolution images.
(2)对同一截面的多帧B-scan图像进行筛选,将参考帧分别与选定的基准帧作比较,选择PSNR(峰值信噪比)和SSIM(结构相似指数)值大的参考帧与基准帧融合进行重建。选定的基准帧和经过筛选的参考帧构成重建低分辨率数据集。(2) Screen the multi-frame B-scan images of the same section, compare the reference frames with the selected reference frames, and select the reference frames with large PSNR (Peak Signal-to-Noise Ratio) and SSIM (Structural Similarity Index) values. Reference frames are fused for reconstruction. The selected base frames and filtered reference frames constitute the reconstructed low-resolution data set.
(3)利用SIFT(尺度不变性特征匹配算法)算法对上述数据集进行角度校正,将参考帧的方向调整为与基准帧一致,消除后续的位移估计中存在的角度影响。通过SIFT算法检出基准帧与参考帧中的所有特征点和相应的特征向量,通过计算两图中的特征向量的欧氏距离找到与基准帧中的特征点相匹配参考帧中的特征点,建立对应关系。对所有匹配特征点进行筛选,选取部分匹配度最高的特征点,对其坐标进行统计,计算两图像的平均旋转角度。按照计算出的旋转角度校正参考帧图像。(3) Use the SIFT (Scale Invariant Feature Matching Algorithm) algorithm to perform angle correction on the above data set, adjust the direction of the reference frame to be consistent with the reference frame, and eliminate the angular influence in subsequent displacement estimation. All feature points and corresponding feature vectors in the base frame and reference frame are detected through the SIFT algorithm, and the feature points in the reference frame that match the feature points in the base frame are found by calculating the Euclidean distance of the feature vectors in the two images. Establish corresponding relationships. All matching feature points are screened, some feature points with the highest matching degree are selected, their coordinates are counted, and the average rotation angle of the two images is calculated. Correct the reference frame image according to the calculated rotation angle.
(4)将基准帧和参考帧裁剪成图像块,对应图像块之间利用频域配准法计算位移,在上一步中已经基于SIFT算法进行了角度校正,因此忽略计算出的位移中存在的角度影响,认为只存在x,y方向的位移,以像素个数为单位。(4) Cut the base frame and reference frame into image blocks, and use the frequency domain registration method to calculate the displacement between the corresponding image blocks. In the previous step, the angle correction has been performed based on the SIFT algorithm, so the calculated displacement is ignored. Angle influence, it is considered that there is only displacement in the x and y directions, and the unit is the number of pixels.
频域配准原理:Frequency domain registration principle:
空域内图像f2(x)相对于图像f1(u)的位移对应于频域内图像F2(u)相对于图像F1(u)的相移,因此位移参数Δx可以通过计算相位差∠(F2(u)/F1(u))获得。记录每个图像块的相对位移,基于亚像素位移(Δx,Δy)进行凸集投影超分辨率图像重建。The displacement of image f 2 (x) in the spatial domain relative to the image f 1 (u) corresponds to the phase shift of the image F 2 (u) in the frequency domain relative to the image F 1 (u), so the displacement parameter Δx can be calculated by calculating the phase difference ∠ (F 2 (u)/F 1 (u)) is obtained. The relative displacement of each image block is recorded, and convex set projection super-resolution image reconstruction is performed based on the sub-pixel displacement (Δx, Δy).
(5)凸集投影图像重建过程主要分为以下六个步骤:(5) The convex set projection image reconstruction process is mainly divided into the following six steps:
(5.1)建立图像降质模型:首先建立一个联系原始高分辨率图像和低分辨率观测序列的图像获取模型,即为未知高分辨率图像的迭代公式,可表示为:(5.1) Establish an image degradation model: First, establish an image acquisition model that connects the original high-resolution image and the low-resolution observation sequence, which is an iterative formula for the unknown high-resolution image, which can be expressed as:
(5.2)基准帧插值到目标分辨率:使用线性插值法对基准帧图像插值,将插值后的基准帧作为高分辨率图像的初始估计,在此基础上利用参考帧提供的先验信息逐像素进行像素值修正。(5.2) Reference frame interpolation to target resolution: Use linear interpolation method to interpolate the reference frame image, use the interpolated reference frame as the initial estimate of the high-resolution image, and use the prior information provided by the reference frame pixel by pixel on this basis. Perform pixel value correction.
(5.3)对高分辨率图像的每一个像素定义闭合凸集:实际成像过程中,不可避免地受到噪声的干扰,因此在线性平移模糊约束的基础上引入了加性噪声的影响,使噪声的统计特性与先验边界δ0联系起来。假如加性噪声是高斯分布的,且其方差为σv,那么δ0应该等于cσv(c≥0),由一个确定的统计置信度来决定。对重建高分辨率图像的每一个像素定义以下的闭合凸集:(5.3) Define a closed convex set for each pixel of the high-resolution image: In the actual imaging process, noise is inevitably interfered, so the influence of additive noise is introduced based on the linear translation fuzzy constraint to make the noise The statistical properties are linked to the a priori boundary δ 0 . If the additive noise is Gaussian distributed and its variance is σ v , then δ 0 should be equal to cσ v (c≥0), determined by a certain statistical confidence. Define the following closed convex set for each pixel of the reconstructed high-resolution image:
其中,表示x(i1,i2)与g(m1,m2)之间的残差。in, Represents the residual difference between x(i 1 , i 2 ) and g(m 1 , m 2 ).
(5.4)根据降质模型逐像素计算残差,判断是否超过边界限制,修正插值后的基准帧图像像素值要限定像素值不超过阈值:计算参考帧与经过点扩散函数降采样的模拟低分辨率图像之间的残差,根据残差值是否超出边界限定按照下式修正该像素点灰度值。(5.4) Calculate the residual pixel by pixel according to the degradation model to determine whether the boundary limit is exceeded. The pixel value of the reference frame image after correcting the interpolation must limit the pixel value not to exceed the threshold: Calculate the reference frame and the simulated low-resolution downsampled by the point spread function The residual difference between rate images is corrected according to the following formula according to whether the residual value exceeds the boundary limit.
经修正后的像素值需要满足在图像阈值区间[0,255]内The corrected pixel value needs to be within the image threshold interval [0, 255]
(5.5)逐帧引入所有的参考帧进行修正:依次读入所有参考帧,遍历参考帧中所有像素点,计算残差。并将残差值修正在经过插值放大的基准帧上,修正位置对应为:(5.5) Introduce all reference frames frame by frame for correction: read in all reference frames in sequence, traverse all pixels in the reference frames, and calculate the residual. And the residual value is corrected on the reference frame that has been amplified by interpolation, and the correction position corresponds to:
(5.6)循环多次进行修正:受点扩散函数的幅值限制,一次迭代并不能完全将参考帧内的补充信息融合到高分辨率的基准帧上,因此需要进行多次迭代,使不同参考帧图像上采集到的同一成像对象的不同信息充分融合。(5.6) Loop multiple times for correction: Limited by the amplitude of the point spread function, one iteration cannot completely integrate the supplementary information in the reference frame into the high-resolution reference frame, so multiple iterations are needed to make different reference frames Different information of the same imaging object collected on the frame image is fully integrated.
以上重建过程的操作对象是参考帧和基准帧对应位置的图像块,不同图像块可以按照对应的亚像素位移进行配准,像素值修正位置更加精确。因此分块进行位移估计和图像重建,再将经过超分辨率重建的块图像按照原位置进行拼接,获得整幅超分辨率图像。The operation object of the above reconstruction process is the image blocks at the corresponding positions of the reference frame and the base frame. Different image blocks can be registered according to the corresponding sub-pixel displacements, and the pixel value correction position is more accurate. Therefore, displacement estimation and image reconstruction are performed in blocks, and then the super-resolution reconstructed block images are spliced according to their original positions to obtain the entire super-resolution image.
本发明的特点以及有益效果是,所提出的基于多帧光学相干层析扫描的凸集投影超分辨率重建方法,主要体现了如下四个优点:The characteristics and beneficial effects of the present invention are that the proposed convex set projection super-resolution reconstruction method based on multi-frame optical coherence tomography scanning mainly embodies the following four advantages:
(1)可以同时提高OCT系统的横向与纵向的分辨率,不需要对系统硬件进行改动和升级,由此降低了高分辨率OCT系统的制造成本和技术要求,并且能够突破衍射极限,获得亚微米级别的OCT像素分辨率。(1) The horizontal and vertical resolution of the OCT system can be improved at the same time without the need to modify or upgrade the system hardware, thereby reducing the manufacturing cost and technical requirements of the high-resolution OCT system, and can break through the diffraction limit and obtain sub- Micron-level OCT pixel resolution.
(2)基于多帧图像的超分辨率重建技术不同于基于单图像的反卷积技术,对点扩散函数的依赖性不高,不需要对点扩散函数进行精确计算。避免了OCT系统因集成度高而造成的光学扫描系统参数难以获得的困境,降低了计算的复杂度。仅通过改变OCT系统的扫描模式,即可重建高分辨率图像,因而该方法可以应用于所有参数型号的OCT设备。(2) Super-resolution reconstruction technology based on multi-frame images is different from deconvolution technology based on single images. It does not have high dependence on the point spread function and does not require accurate calculation of the point spread function. It avoids the difficulty of obtaining optical scanning system parameters due to the high integration level of the OCT system, and reduces the complexity of calculations. High-resolution images can be reconstructed simply by changing the scanning mode of the OCT system, so this method can be applied to all parameter models of OCT equipment.
(3)能够提升分辨率倍数取决于重建数据集的帧数,一般来说应遵循重建倍数的平方不超过数据集帧数的原则(k2≤n),因此不同于基于“深度学习的超分辨率重建技术”受模型参数的限制,在数据集支持的前提下,可以实现任意倍数的超分辨率重建。(3) The resolution multiple that can be improved depends on the number of frames in the reconstructed data set. Generally speaking, the square of the reconstruction multiple should not exceed the number of frames in the data set (k 2 ≤ n). Therefore, it is different from the ultra-high resolution based on "deep learning". "Resolution reconstruction technology" is limited by model parameters, and can achieve super-resolution reconstruction at any multiple if the data set supports it.
(4)该方法基于多帧低分辨率图像提供的先验信息进行重建,单一成像对象的信息量比“基于单图像反卷积”和“深度学习的超分辨率重建”更加丰富,因此重建图像的真实度相比其他两种方法更高。弥补了基于单图像反卷积的超分辨率技术由于OCT系统本身并不存在二维空间点扩散函数,因而对点扩散函数估计不准确的缺陷。避免了基于深度学习的超分辨率技术对于大量的正确高-低分辨率图像对训练集的需求。能够实现高效率重建真实的高分辨率OCT图像。(4) This method performs reconstruction based on the prior information provided by multiple frames of low-resolution images. The amount of information of a single imaging object is richer than "super-resolution reconstruction based on single image deconvolution" and "deep learning", so the reconstruction The image realism is higher than the other two methods. It makes up for the shortcomings of super-resolution technology based on single image deconvolution because the OCT system itself does not have a two-dimensional space point spread function, so the point spread function is inaccurately estimated. It avoids the need for a large number of correct high-low resolution images for training sets based on deep learning-based super-resolution technology. It can achieve high-efficiency reconstruction of real high-resolution OCT images.
本发明提出的方法可以实现高效率重建真实的高分辨率OCT图像,降低高分辨率OCT设备的制造成本。不需要大量数据集的支持,也不需要对OCT光学扫描系统参数有深入了解,因此降低了计算成本和复杂度,并且适用于所有参数和型号的OCT系统。更重要的是,本方法理论上可以突破衍射极限,实现亚微米级别的OCT扫描精度。The method proposed by the present invention can realize high-efficiency reconstruction of real high-resolution OCT images and reduce the manufacturing cost of high-resolution OCT equipment. It does not require the support of a large number of data sets, nor does it require in-depth knowledge of the parameters of the OCT optical scanning system, thus reducing the computational cost and complexity, and is applicable to all parameters and models of OCT systems. More importantly, this method can theoretically break through the diffraction limit and achieve submicron-level OCT scanning accuracy.
附图说明Description of the drawings
附图1为本发明的计算重建流程框图。Figure 1 is a flow chart of calculation and reconstruction of the present invention.
附图2(a)为参考帧与基准帧的峰值信噪比。Figure 2(a) shows the peak signal-to-noise ratio of the reference frame and the reference frame.
附图2(b)为参考帧与基准帧的结构相似度。Figure 2(b) shows the structural similarity between the reference frame and the base frame.
附图3为参考帧相对于基准帧的图像位移情况。Figure 3 shows the image displacement of the reference frame relative to the base frame.
附图4为SIFT算法特征点检出和匹配情况的图像。Figure 4 is an image of the SIFT algorithm feature point detection and matching.
附图5为重建高分辨率图像及对照插值高分辨率图像。Figure 5 shows the reconstructed high-resolution image and the comparison interpolated high-resolution image.
具体实施方式Detailed ways
为了进一步阐明本发明方法,以下结合附图并通过具体实施例对本发明的技术方案做详细的说明。In order to further clarify the method of the present invention, the technical solution of the present invention is described in detail below with reference to the accompanying drawings and through specific embodiments.
基于多帧光学相干层析图像的凸集投影超分辨率重建方法,其技术方案是通过融合多帧低分辨率图像中所包含的信息,重建高分辨率图像中的高频信息,以获得清晰的高分辨率图像。重建的方法包括运动估计和凸集投影图像重建两大部分,其中运动估计包括4个步骤,凸集投影图像重建包括6个步骤。The convex set projection super-resolution reconstruction method based on multi-frame optical coherence tomography images, the technical solution is to reconstruct the high-frequency information in the high-resolution image by fusing the information contained in the multi-frame low-resolution image to obtain clear high resolution image. The reconstruction method includes two parts: motion estimation and convex set projection image reconstruction. Motion estimation includes 4 steps, and convex set projection image reconstruction includes 6 steps.
运动估计:Motion estimation:
(1)采集OCT断层扫描低分辨率图像序列,以改变光学相干层析系统的扫描模式,使其快速扫描同一截面获得多帧B-scan图像,任选其中一帧图像作为基准帧,其他图像作为参考帧,用于计算重建高分辨率图像。(1) Collect OCT tomography low-resolution image sequences to change the scanning mode of the optical coherence tomography system so that it can quickly scan the same section to obtain multiple frames of B-scan images. Select one of the images as the reference frame and the other images. As a reference frame, used to calculate the reconstructed high-resolution image.
(2)对同一截面的多帧B-scan图像进行筛选,将参考帧分别与选定的基准帧作比较,选择其中PSNR和SSIM值大的参考帧与基准帧融合进行重建,选定的基准帧和经过筛选的参考帧构成重建低分辨率数据集。(2) Screen the multi-frame B-scan images of the same section, compare the reference frames with the selected benchmark frames, and select the reference frames with large PSNR and SSIM values to be fused with the benchmark frames for reconstruction. The selected benchmarks frames and filtered reference frames constitute the reconstructed low-resolution data set.
(3)利用SIFT算法对步骤2所获数据集进行角度校正,将参考帧的方向调整为与基准帧一致,消除后续的位移估计中存在的角度影响。通过SIFT算法检出基准帧与参考帧中的所有特征点和相应的特征向量,通过计算两图中特征向量的欧氏距离找到与基准帧中的特征点相匹配参考帧中的特征点,建立对应关系。对所有匹配特征点进行筛选,选取其中匹配度最高的特征点,对其坐标进行统计。计算两图像的平均旋转角度,按照计算出的旋转角度校正参考帧图像。(3) Use the SIFT algorithm to perform angle correction on the data set obtained in step 2, adjust the direction of the reference frame to be consistent with the reference frame, and eliminate the angular influence in subsequent displacement estimation. Use the SIFT algorithm to detect all feature points and corresponding feature vectors in the base frame and the reference frame, and calculate the Euclidean distance of the feature vectors in the two images to find the feature points in the reference frame that match the feature points in the base frame, and establish Correspondence. Filter all matching feature points, select the feature point with the highest matching degree, and calculate its coordinates. Calculate the average rotation angle of the two images, and correct the reference frame image according to the calculated rotation angle.
(4)将基准帧和参考帧裁剪成图像块,对应图像块之间利用Vandewalle等提出的频域配准法计算位移,在步骤3中已经基于SIFT算法进行了角度校正,因此忽略计算出的位移中存在的角度影响,认为只存在x,y方向的位移,以像素个数为单位。(4) Cut the base frame and reference frame into image blocks, and use the frequency domain registration method proposed by Vandewalle et al. to calculate the displacement between the corresponding image blocks. In step 3, the angle correction has been performed based on the SIFT algorithm, so the calculated The angular influence that exists in the displacement is considered to only exist in the x and y directions, and is measured in the number of pixels.
Vandewalle频域配准原理计算式:Vandewalle frequency domain registration principle calculation formula:
空域内图像f2(x)相对于图像f1(x)的位移,对应于频域内图像F2(u)相对于图像F1(u)的相移。位移参数Δx可以通过计算相位差∠(F2(u)/F1(u))获得。记录每个图像块的相对位移,基于亚像素位移(Δx,Δy)进行凸集投影超分辨率图像重建。The displacement of image f 2 (x) relative to image f 1 (x) in the spatial domain corresponds to the phase shift of image F 2 (u) relative to image F 1 (u) in the frequency domain. The displacement parameter Δx can be obtained by calculating the phase difference ∠(F 2 (u)/F 1 (u)). The relative displacement of each image block is recorded, and convex set projection super-resolution image reconstruction is performed based on the sub-pixel displacement (Δx, Δy).
上述完成之后利用凸集投影方法重建高分辨率图像,凸集投影的方法是把未知图像假设为一个适宜希尔伯特空间中的元素,每一帧低分辨率参考帧作为未知图像的一个先验知识,限制产生了希尔伯特空间中的一个包含解的封闭凸集,然后引入幅度边界的限制,以此导出求解未知图像的迭代公式,由初始估计迭代,计算超分辨率图像。After the above is completed, the high-resolution image is reconstructed using the convex set projection method. The convex set projection method assumes that the unknown image is an element in a suitable Hilbert space, and each low-resolution reference frame is used as a precursor to the unknown image. Based on empirical knowledge, the restriction generates a closed convex set containing the solution in the Hilbert space, and then introduces the restriction of the amplitude boundary, thereby deriving an iterative formula for solving the unknown image, iterating from the initial estimate, and calculating the super-resolution image.
凸集投影图像重建包括以下六个步骤:Convex set projection image reconstruction includes the following six steps:
(5.1)建立图像降质模型:首先建立一个联系原始高分辨率图像和低分辨率观测序列的图像获取模型,该模型为未知高分辨率图像的迭代公式,可表示为:(5.1) Establish an image degradation model: First, establish an image acquisition model that links the original high-resolution image and the low-resolution observation sequence. This model is an iterative formula for the unknown high-resolution image, which can be expressed as:
其中,gl(m1,m2)为第l帧低分辨率图像,x为原始的高分辨率图像,hl表示空间点扩散函数(PSF),称为降质函数,ηl表示加性噪声。m1×m2为低分辨图像像素尺寸,n1×n2为高分辨率图像像素尺寸,i1×i2为高分辨率图像局部像素点个数,其大小与空间点扩散函数hl一致。Among them, g l (m 1 , m 2 ) is the l-th low-resolution image, x is the original high-resolution image, h l represents the spatial point spread function (PSF), which is called the degradation function, and eta l represents the addition function. sex noise. m 1 × m 2 is the pixel size of the low-resolution image, n 1 × n 2 is the pixel size of the high-resolution image, i 1 × i 2 is the number of local pixels in the high-resolution image, and its size is related to the spatial point spread function h l consistent.
(5.2)基准帧插值到目标分辨率:使用线性插值法对基准帧图像插值,将插值后的基准帧作为高分辨率图像的初始估计,在此基础上利用参考帧提供的先验信息(低分辨率图像包含的信息)逐像素进行像素值修正。(5.2) Interpolate the reference frame to the target resolution: use linear interpolation method to interpolate the reference frame image, use the interpolated reference frame as the initial estimate of the high-resolution image, and use the a priori information provided by the reference frame (low The information contained in the resolution image) performs pixel value correction on a pixel-by-pixel basis.
(5.3)对高分辨率图像的每一个像素定义闭合凸集:实际成像过程中,不可避免地受到噪声的干扰,因此在线性平移模糊约束的基础上引入了加性噪声的影响,使噪声的统计特性与先验边界δ0联系起来。假如加性噪声是高斯分布的,且其方差为σv,那么δ0等于cσv(c≥0),由一个确定的统计置信度来决定。对重建高分辨率图像的每一个像素定义以下的闭合凸集:其中,/>表示x(i1,i2)与g(m1,m2)之间的残差。其中,g(m1,m2)表示低分辨率参考帧中的单个像素;x(i1,i2)表示高分辨率初始估计图像中与g(m1,m2)对应的区域像素。其区域尺度为[M1,M2],表示空间点扩散函数h(m1,m2;i1,i2)的模板尺寸。当x(i1,i2)表示真实高分辨率图像像素点时,r(y)(m1,m2)与噪声ηl(m1,m2)分布相一致。对闭合凸集的定义表示参考帧图像在像素点(m1,m2)的值与模拟成像过程,在该点的值之间差值的绝对值,它限制在预先设置的边界条件δ0=cσv内。(5.3) Define a closed convex set for each pixel of the high-resolution image: In the actual imaging process, noise is inevitably interfered, so the influence of additive noise is introduced based on the linear translation fuzzy constraint to make the noise The statistical properties are linked to the a priori boundary δ 0 . If the additive noise is Gaussian distributed and its variance is σ v , then δ 0 is equal to cσ v (c≥0), determined by a certain statistical confidence. Define the following closed convex set for each pixel of the reconstructed high-resolution image: Among them,/> Represents the residual difference between x(i 1 , i 2 ) and g(m 1 , m 2 ). Among them, g(m 1 , m 2 ) represents a single pixel in the low-resolution reference frame; x(i 1 , i 2 ) represents the regional pixel corresponding to g(m 1 , m 2 ) in the high-resolution initial estimation image . Its regional scale is [M 1 , M 2 ], which represents the template size of the spatial point spread function h (m 1 , m 2 ; i 1 , i 2 ). When x(i 1 , i 2 ) represents a real high-resolution image pixel, r (y) (m 1 , m 2 ) is consistent with the distribution of noise η l (m 1 , m 2 ). The definition of a closed convex set represents the absolute value of the difference between the value of the reference frame image at the pixel point (m 1 , m 2 ) and the simulated imaging process at that point, which is limited to the preset boundary condition δ 0 =cσ within v .
(5.4)根据降质模型逐像素计算残差,判断是否超过边界限制,修正插值后的基准帧图像像素值要限定像素值不超过阈值:计算参考帧与经过点扩散函数降采样的模拟低分辨率图像(即高分辨率初始估计图像经过点扩散函数降采样后的低分辨率图像)之间的残差。根据残差值是否超出边界限定,按照下式修正该像素点灰度值。(5.4) Calculate the residual pixel by pixel according to the degradation model to determine whether the boundary limit is exceeded. The pixel value of the reference frame image after correcting the interpolation must limit the pixel value not to exceed the threshold: Calculate the reference frame and the simulated low-resolution downsampled by the point spread function The residual difference between rate images (that is, the low-resolution image after the high-resolution initial estimation image is downsampled by the point spread function). Depending on whether the residual value exceeds the boundary limit, the gray value of the pixel is corrected according to the following formula.
经修正后的像素值需要满足在图像阈值区间[0,255]内,The corrected pixel value needs to be within the image threshold interval [0, 255],
(5.5)逐帧引入所有的参考帧进行修正:依次读入所有参考帧,遍历参考帧中所有像素点,计算残差,并将残差值修正在经过插值放大的基准帧上,修正位置对应为:(5.5) Introduce all reference frames frame by frame for correction: read all reference frames in sequence, traverse all pixels in the reference frame, calculate the residual, and correct the residual value on the reference frame that has been amplified by interpolation, and correct the position correspondence for:
其中(m1,m2)为低分辨率参考帧像素坐标位置,(Δx,Δy)为频域配准估计得到的亚像素位移,(i1,i1)为经过插值的基准帧高分辨初始率估计图像像素坐标,k为插值倍数,方括号内取整函数,将所有的参考帧按照以上规则对基准帧进行修正后,即完成一次迭代;Where (m 1 , m 2 ) is the pixel coordinate position of the low-resolution reference frame, (Δx, Δy) is the sub-pixel displacement estimated by frequency domain registration, (i 1 , i 1 ) is the interpolated high-resolution reference frame The initial rate estimates the image pixel coordinates, k is the interpolation multiple, and the rounding function is in square brackets. After all reference frames are corrected according to the above rules, an iteration is completed;
(5.6)循环多次进行修正:受点扩散函数的幅值限制,一次迭代并不能完全将参考帧内的补充信息融合到高分辨率的基准帧上,因此需要进行多次迭代,使不同参考帧图像上采集到的同一成像对象不同的信息充分融合。(5.6) Loop multiple times for correction: Limited by the amplitude of the point spread function, one iteration cannot completely integrate the supplementary information in the reference frame into the high-resolution reference frame, so multiple iterations are needed to make different reference frames Different information of the same imaging object collected on the frame image is fully integrated.
上述重建过程的操作对象是参考帧和基准帧对应位置的图像块,不同图像块按照对应的亚像素位移进行配准,这样像素值修正位置更加精确,因此先分块进行位移估计和图像重建,然后再将经过超分辨率重建的块图像按照原位置进行拼接,获得整幅超分辨率图像。The operation object of the above reconstruction process is the image blocks at the corresponding positions of the reference frame and the base frame. Different image blocks are registered according to the corresponding sub-pixel displacements, so that the pixel value correction position is more accurate. Therefore, the displacement estimation and image reconstruction are performed in blocks first. Then the super-resolution reconstructed block images are spliced according to their original positions to obtain the entire super-resolution image.
本发明为获得用于重建的低分辨率数据集,改变OCT设备扫描模式,在1s内扫描视网膜同一截面获得B-scan图像25张,图像大小为256×200pix。由于OCT的成像对象是存在运动变化的活体人眼视网膜,并且受到随机的散粒噪声影响,时间序列上的低分辨率图像序列包含着同一成像目标在不同位置成像的不同明暗边界信息,这也是能够进行超分辨率重建的关键。但需要对低分辨率图像序列的结构相似性进行比较,这是因为活体人眼视网膜受眼动的影响,会出现视网膜局部牵拉产生结构变形的情况。此时拍摄的低分辨率图像不可再视为对同一成像对象成像的图像序列。因此需要对获得的低分辨率图像按照结构相似度进行筛选。In order to obtain a low-resolution data set for reconstruction, the present invention changes the scanning mode of the OCT device and scans the same section of the retina within 1 second to obtain 25 B-scan images with an image size of 256×200pix. Since the imaging object of OCT is the retina of the living human eye with motion changes and is affected by random shot noise, the low-resolution image sequence in the time series contains different light and dark boundary information of the same imaging target imaged at different positions. This is also The key to being able to perform super-resolution reconstruction. However, it is necessary to compare the structural similarity of low-resolution image sequences. This is because the retina of the living human eye is affected by eye movements, and there will be structural deformation caused by local pulling of the retina. The low-resolution images taken at this time can no longer be regarded as a sequence of images imaging the same imaging object. Therefore, the obtained low-resolution images need to be screened according to structural similarity.
在筛选时,选用峰值信噪比(PSNR)和结构相似指数(SSIM)两个指标比较图像序列的失真情况和相似度,根据图2可以看到两个指标变化趋势具有一致性。选择峰值信噪比进行衡量,是为了去除掉受噪声影响过大的低分辨率图像。选择结构相似指数进行衡量是为了去除掉受眼动影响使成像目标发生变化的低分辨率图像。选定第1帧低分辨率图像作为基准帧和经过筛选的2~20帧图像作为参考帧构成重建低分辨率数据集。同时,利用SIFT算法对前20帧图像的整体位移情况进行检测。如图3所示,编号为2、3、6、7、8、10、11、12、13、16、18的低分辨率参考帧与基准帧之间存在亚像素位移关系,其他参考帧不存在直接的亚像素位移关系,因此对同一成像对象的成像信息准确度下降,因此在重建计算时优先选择以上编号的低分辨率图像进行重建。During screening, two indicators, Peak Signal-to-Noise Ratio (PSNR) and Structural Similarity Index (SSIM), were used to compare the distortion and similarity of image sequences. According to Figure 2, it can be seen that the change trends of the two indicators are consistent. The peak signal-to-noise ratio is chosen for measurement in order to remove low-resolution images that are excessively affected by noise. The structural similarity index is selected for measurement in order to remove low-resolution images that are affected by eye movements and cause changes in the imaging target. The first frame of low-resolution image is selected as the base frame and the filtered 2 to 20 frames of images are used as reference frames to form the reconstructed low-resolution data set. At the same time, the SIFT algorithm is used to detect the overall displacement of the first 20 frames of images. As shown in Figure 3, there is a sub-pixel displacement relationship between the low-resolution reference frames numbered 2, 3, 6, 7, 8, 10, 11, 12, 13, 16, and 18 and the reference frame. Other reference frames do not. There is a direct sub-pixel displacement relationship, so the accuracy of imaging information for the same imaging object decreases. Therefore, in the reconstruction calculation, the low-resolution images numbered above are given priority for reconstruction.
利用SIFT算法对上述数据集进行角度校正,将参考帧的方向调整为与基准帧一致,消除后续的位移估计中存在的角度影响。SIFT算法检出的特征点参数包括一个128维的特征点描述向量、特征点坐标,尺度因子和旋转主方向。如图4所示,基准帧中检出特征点693个,参考帧中检出特征点700个。通过计算两图中的特征向量的欧氏距离找到与基准帧中的特征点相匹配参考帧中的特征点,建立对应关系。对所有匹配特征点进行筛选,选取部分匹配度最高的特征点,对其旋转主方向之差进行统计,计算两图像的平均旋转角度。按照计算出的平均旋转角度旋转参考帧图像进行校正。消除利用频域法估计位移过程中的角度影响。The SIFT algorithm is used to perform angle correction on the above data set, and the direction of the reference frame is adjusted to be consistent with the reference frame to eliminate the angular influence in subsequent displacement estimation. The feature point parameters detected by the SIFT algorithm include a 128-dimensional feature point description vector, feature point coordinates, scale factor and main direction of rotation. As shown in Figure 4, 693 feature points were detected in the base frame and 700 feature points were detected in the reference frame. By calculating the Euclidean distance of the feature vectors in the two images, we find the feature points in the reference frame that match the feature points in the reference frame, and establish a corresponding relationship. All matching feature points are screened, some feature points with the highest matching degree are selected, statistics are made on the difference in the main directions of rotation, and the average rotation angle of the two images is calculated. Rotate the reference frame image according to the calculated average rotation angle for correction. Eliminate the angular influence in the process of estimating displacement using the frequency domain method.
接下来将基准帧和参考帧裁剪成图像块,对应图像块之间利用Vandewalle等提出的频域配准法计算位移。这里采用频域法进行位移估计而不直接根据SIFT检出的特征点进行位移估计的原因是,SIFT算法虽然抗噪声干扰,但视网膜OCT图像层结构内部点受加性噪声影响易被作为特征点检出,造成误匹配现象,相比于基于图像块的频域配准法准确率下降。裁剪块图像进行匹配的原因是可以在整幅图像上结合多个亚像素位移向量进行像素值修正,能够获得更加准确地将信息添加到修正位置上。因此,按照低分辨率图像大小裁分成横纵4×4共16个图像块,对应块之间进行频域配准,单张参考帧可以利用16个亚像素位移向量对基准帧进行局部微调,以期获得清晰的高分辨率重建图像。Next, the base frame and reference frame are cropped into image blocks, and the displacement between the corresponding image blocks is calculated using the frequency domain registration method proposed by Vandewalle et al. The reason why the frequency domain method is used here for displacement estimation instead of directly based on the feature points detected by SIFT is that although the SIFT algorithm is resistant to noise interference, the internal points of the retinal OCT image layer structure are affected by additive noise and are easily used as feature points. detection, resulting in false matching, and the accuracy is lower than that of the frequency domain registration method based on image blocks. The reason for cropping the block image for matching is that multiple sub-pixel displacement vectors can be combined on the entire image to perform pixel value correction, which can add information to the correction position more accurately. Therefore, the low-resolution image is cut into 16 horizontal and vertical 4×4 image blocks according to the size, and frequency domain registration is performed between corresponding blocks. A single reference frame can use 16 sub-pixel displacement vectors to locally fine-tune the reference frame. In order to obtain clear high-resolution reconstructed images.
首先建立一个原始高分辨率图像和低分辨率参考帧图像的映射模型,即为未知高分辨率图像的迭代公式:First, a mapping model between the original high-resolution image and the low-resolution reference frame image is established, which is the iterative formula for the unknown high-resolution image:
将基准帧插值到目标分辨率作为高分辨率图像的初始估计,在此基础上利用参考帧提供的先验信息逐像素进行像素值修正微调。插值目标倍数取决于重建基于参考帧图像的数量,遵循k2≤n(k为插值放大倍数,n为参考帧图像数量),如图5所示4倍重建使用参考帧数量不少于16帧,因此采用20帧参考帧图像,3倍重建使用参考帧数量不少于9帧,因此采用12帧参考帧图像。The reference frame is interpolated to the target resolution as an initial estimate of the high-resolution image. On this basis, the prior information provided by the reference frame is used to perform pixel value correction and fine-tuning pixel by pixel. The interpolation target multiple depends on the number of reference frame images for reconstruction, and follows k 2 ≤ n (k is the interpolation magnification factor, n is the number of reference frame images), as shown in Figure 5. The number of reference frames used for 4x reconstruction is no less than 16 frames. , so 20 reference frame images are used, and the number of reference frames used for 3x reconstruction is no less than 9 frames, so 12 reference frame images are used.
对高分辨率图像的每一个像素定义闭合凸集:Define a closed convex set for each pixel of the high-resolution image:
这里,/>表示x(i1,i2)与g(m1,m2)之间的残差。其中,g(m1,m2)表示低分辨率参考帧中的单个像素,x(i1,i2)表示高分辨率初始估计图像中与g(m1,m2)对应的区域像素,其区域尺度为[7,7]即为空间点扩散函数h(m1,m2;i1,i2)的模板尺寸。空间点扩散函数的尺度与重建放大分辨率的倍数关系为M1=M2=2k-1,空间点扩散函数为二维高斯函数形式。对空间点扩散函数建模不准确会造成像素修正值估计不准确,但凸集投影算法的多次迭代过程可以弥补这一缺陷,其主要依赖于大量先验信息的准确度,因此非常适合用于OCT扫描系统本身不存在二维空间点扩散函数的情况。这里认为噪声ηl(m1,m2)分布符合正态分布N(0,1),因此对闭合凸集的定义表示参考帧图像在像素点(m1,m2)的值与模拟成像过程在该点的值之间的差值的绝对值限制在预先设置的边界条件δ0=σv=1(c=1)内。 Here,/> Represents the residual difference between x(i 1 , i 2 ) and g(m 1 , m 2 ). Among them, g(m 1 , m 2 ) represents a single pixel in the low-resolution reference frame, and x(i 1 , i 2 ) represents the regional pixel corresponding to g(m 1 , m 2 ) in the high-resolution initial estimation image. , whose regional scale is [7, 7], which is the template size of the spatial point spread function h (m 1 , m 2 ; i 1 , i 2 ). The relationship between the scale of the spatial point spread function and the multiple of the reconstruction magnification resolution is M 1 =M 2 =2k-1, and the spatial point spread function is in the form of a two-dimensional Gaussian function. Inaccurate modeling of the spatial point spread function will lead to inaccurate estimation of pixel correction values, but the multiple iterations of the convex set projection algorithm can make up for this flaw. It mainly relies on the accuracy of a large amount of prior information, so it is very suitable for use with There is no two-dimensional point spread function in the OCT scanning system itself. It is considered here that the distribution of noise η l (m 1 , m 2 ) conforms to the normal distribution N (0, 1), so the definition of a closed convex set means that the value of the reference frame image at the pixel point (m 1 , m 2 ) is consistent with the simulated imaging The absolute value of the difference between the values of the process at this point is limited to the preset boundary condition δ 0 =σ v =1 (c=1).
接下来,计算参考帧与经过点扩散函数降采样的模拟低分辨率图像(即高分辨率初始估计图像经过点扩散函数降采样后的低分辨率图像)之间的残差,根据残差值是否超出边界限定按照下式修正该像素点灰度值,并限定经修正后的像素值在图像阈值区间[0,255]内。Next, calculate the residual between the reference frame and the simulated low-resolution image downsampled by the point spread function (i.e., the low-resolution image after the high-resolution initial estimate image is downsampled by the point spread function). According to the residual value Whether it exceeds the boundary limit, the gray value of the pixel is corrected according to the following formula, and the corrected pixel value is limited to the image threshold interval [0, 255].
依次读入所有参考帧,遍历参考帧中所有像素点,计算残差。并将残差值修正在经过插值放大的基准帧上,修正位置对应为:Read all reference frames in sequence, traverse all pixels in the reference frames, and calculate the residuals. And the residual value is corrected on the reference frame that has been amplified by interpolation, and the correction position corresponds to:
其中(m1,m2)为低分辨率参考帧像素坐标位置,(Δx,Δy)为频域配准估计得到的亚像素位移,(i1,i2)为经过插值的基准帧高分辨初始率估计图像像素坐标,k为插值倍数。将所有的参考帧按照以上规则对基准帧进行修正后,即完成一次迭代。进行多次迭代,使不同参考帧图像上采集到的同一成像对象的不同信息充分融合。Where (m 1 , m 2 ) is the pixel coordinate position of the low-resolution reference frame, (Δx, Δy) is the sub-pixel displacement estimated by frequency domain registration, (i 1 , i 2 ) is the interpolated high-resolution reference frame The initial rate estimates the image pixel coordinates, and k is the interpolation multiple. After all reference frames are corrected according to the above rules, an iteration is completed. Multiple iterations are performed to fully integrate different information of the same imaging object collected on different reference frame images.
以上重建过程的操作对象是参考帧和基准帧对应位置的图像块,基于单块图像完成位移估计和图像重建后,需要再将经过超分辨率重建的高分辨率块图像按照原位置进行拼接,获得清晰真实,细节信息丰富的整幅超分辨率图像。The operation object of the above reconstruction process is the image blocks at the corresponding positions of the reference frame and the base frame. After the displacement estimation and image reconstruction are completed based on the single block image, the high-resolution block images that have been super-resolution reconstructed need to be spliced according to the original position. Obtain clear, realistic and detailed information-rich super-resolution images of the entire image.
超分辨率重建方法所得结果的详细说明:Detailed description of the results obtained by the super-resolution reconstruction method:
参见图1,这是本发明的计算重建流程:首先,采集多帧同一截面OCT B-scan图像序列并选定其中一帧作为基准帧。之后,进行角度校正和位移估计。利用SIFT算法提取基准帧和参考帧中的特征点和特征向量,计算特征向量的欧氏距离,欧式距离最小即为匹配点。根据匹配点在基准帧和参考帧中的坐标,计算图像平均旋转角度。按照平均旋转角度旋转参考帧,使其与基准帧方向一致。接下来将图像裁剪成图像块,基准帧和参考帧对应图像块之间利用频域法估计亚像素位移,用于图像重建。Referring to Figure 1, this is the computational reconstruction process of the present invention: first, collect multiple frames of the same cross-section OCT B-scan image sequence and select one of the frames as the reference frame. After that, angle correction and displacement estimation are performed. The SIFT algorithm is used to extract feature points and feature vectors in the base frame and reference frame, and the Euclidean distance of the feature vectors is calculated. The minimum Euclidean distance is the matching point. According to the coordinates of the matching points in the base frame and the reference frame, the average rotation angle of the image is calculated. Rotate the reference frame according to the average rotation angle so that it is consistent with the direction of the base frame. Next, the image is cropped into image blocks, and the frequency domain method is used to estimate the sub-pixel displacement between the base frame and the corresponding image blocks of the reference frame for image reconstruction.
凸集投影图像重建过程中,首先将基准帧图像插值放大到目标重建倍数,之后依次读取参考帧图像,进行高通滤波处理。只将低分辨率参考帧的高频信息融合到最终重建的高分辨率图像上,锐化图像中的特征。计算空间点扩散函数(PSF),利用点扩散函数对经过插值放大的基准帧降采样。计算降采样的初始帧与其他参考帧的残差,根据残差值修正初始帧部分像素值,达到微调使图像清晰的目的,并限定调整过后的像素值在0~255范围内。所有参考帧依次读入进行以上计算,全部参考帧完成以上计算过程即完成一次迭代过程,经过多次迭代即完成重建,输出最终重建的高分辨率图像。以上重建的对象为基准帧和参考帧对应的图像块,最终的整幅图像由经过重建的图像块按照原位置拼接形成。In the process of convex set projection image reconstruction, the reference frame image is first interpolated and enlarged to the target reconstruction multiple, and then the reference frame image is read in sequence and subjected to high-pass filtering. Only the high-frequency information of the low-resolution reference frame is fused to the final reconstructed high-resolution image to sharpen the features in the image. Calculate the spatial point spread function (PSF), and use the point spread function to downsample the interpolated and amplified reference frame. Calculate the residual between the downsampled initial frame and other reference frames, and correct some pixel values of the initial frame based on the residual value to achieve the purpose of fine-tuning to make the image clear, and limit the adjusted pixel value to the range of 0 to 255. All reference frames are read in sequentially to perform the above calculations. When all reference frames complete the above calculation process, an iterative process is completed. After multiple iterations, the reconstruction is completed, and the final reconstructed high-resolution image is output. The objects of the above reconstruction are the image blocks corresponding to the base frame and the reference frame, and the final entire image is formed by splicing the reconstructed image blocks according to their original positions.
参见图2(a)和图2(b),该图显示出参考帧与基准帧相比峰值信噪比和结构相似度的情况。以采集到的第一帧图像作为基准帧,其他帧作为参考帧依次编号。可见自第21帧图像开始峰值信噪比和结构相似度显著低于之前的20帧图像,图像结构相似度越低说明低分辨率图像中包含的同一成像对象的信息越少。重建图像易受错误信息影响出现伪影,因此只选用前20帧图像进行重建。See Figure 2(a) and Figure 2(b), which shows the peak signal-to-noise ratio and structural similarity of the reference frame compared with the baseline frame. The first frame of image collected is used as the reference frame, and the other frames are numbered sequentially as reference frames. It can be seen that starting from the 21st frame of the image, the peak signal-to-noise ratio and structural similarity are significantly lower than those of the previous 20 frames. The lower the image structural similarity, the less information about the same imaging object contained in the low-resolution image. The reconstructed image is susceptible to artifacts caused by erroneous information, so only the first 20 frames of images are used for reconstruction.
参见图3,该图显示出参考帧相对于基准帧的亚像素位移估计情况。以图像1基准帧图像为原点,2~25帧图像的亚像素位移估计,如图3所示。以单像素位移为半径画圆,圆内序号所代表图像与基准帧之间有亚像素位移关系。圆外的序号所代表的图像虽然与基准帧相差一个以上的像素距离,但其位移包括亚像素距离,因此在重建过程中依然可以对插值新增像素进行修正。Refer to Figure 3, which shows the sub-pixel displacement estimation of the reference frame relative to the base frame. Taking the reference frame image of image 1 as the origin, the sub-pixel displacement estimation of images from frames 2 to 25 is shown in Figure 3. Draw a circle with a single pixel displacement as the radius, and there is a sub-pixel displacement relationship between the image represented by the serial number in the circle and the reference frame. Although the image represented by the serial number outside the circle differs from the reference frame by more than one pixel distance, its displacement includes sub-pixel distance, so the newly added pixels of the interpolation can still be corrected during the reconstruction process.
参见图4,该图显示出SIFT算法特征点检出和匹配情况。其中:a)为基准帧检出的特征点分布情况;b)为某参考帧检出的特征点分布情况;c)为两帧图像中的特征点匹配情况。记录匹配到的特征点在两帧图像中的坐标位置,计算旋转角度取平均值,作为角度校正值,使参考帧旋转到与基准帧同一方向。See Figure 4, which shows the SIFT algorithm feature point detection and matching. Among them: a) is the distribution of feature points detected in the reference frame; b) is the distribution of feature points detected in a reference frame; c) is the matching of feature points in the two frames of images. Record the coordinate positions of the matched feature points in the two frames of images, calculate the rotation angle and average it as the angle correction value to rotate the reference frame to the same direction as the reference frame.
参见图5,该图显示出基于多帧OCT图像的凸集投影超分辨率重建方法重建出的高分辨率图像。其中:a)为基准帧图像;b)为经双三次插值放大4倍的基准帧图像;c)为基于本方法重建出的分辨率提升4倍的图像,是基于20帧低分辨率图像,经过10次迭代的重建结果;d)为基于本方法重建出的分辨率提升3倍的图像,是基于12帧低分辨率图像的重建结果。其中,低分辨率图像是经过筛选的,选取与基准帧位移距离最近和结构相似度最高的12帧图像进行重建。从重建结果可以看出,相比双三次插值放大的高分辨率图像。See Figure 5, which shows a high-resolution image reconstructed by the convex set projection super-resolution reconstruction method based on multi-frame OCT images. Among them: a) is the base frame image; b) is the base frame image enlarged 4 times by bicubic interpolation; c) is the image reconstructed based on this method with a resolution increased 4 times, which is based on 20 frames of low-resolution images. The reconstruction result after 10 iterations; d) is the image reconstructed based on this method with a resolution increased by 3 times, which is the reconstruction result based on 12 frames of low-resolution images. Among them, the low-resolution images are filtered, and the 12 images with the closest displacement distance and the highest structural similarity to the reference frame are selected for reconstruction. It can be seen from the reconstruction results that the high-resolution image is enlarged compared to bicubic interpolation.
利用本发明方法重建出的相同放大倍数的高分辨率图像更加清晰,视觉效果显著改善,对比度增强,边界明显,高频信息更加丰富。3倍重建结果由于基于的参考帧图像质量更高,因此部分细节明显增强,且与基准帧保持一致,重建结果的真实度更高。The high-resolution image with the same magnification reconstructed by the method of the present invention is clearer, the visual effect is significantly improved, the contrast is enhanced, the boundaries are obvious, and the high-frequency information is richer. The 3x reconstruction result is based on a higher quality reference frame, so some details are significantly enhanced and consistent with the reference frame, making the reconstruction result more realistic.
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