CN118878690A - Preparation and application of an anti-digoxin nanobody - Google Patents
Preparation and application of an anti-digoxin nanobody Download PDFInfo
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Abstract
本发明公开了一种地高辛纳米抗体及其制备方法和应用。本发明所述地高辛纳米抗体氨基酸与核苷酸序列见SEQ ID NO.8‑9。本抗体与目标抗原的亲和能力好,解离常数Kd值为73.1nM左右,可用于地高辛含量测定、核酸探针检测与体内地高辛的中和解毒。本抗体具有体积小、稳定性高、成本低廉、免疫原性低等优点,具有良好的应用前景。
The present invention discloses a digoxin nano antibody and a preparation method and application thereof. The amino acid and nucleotide sequences of the digoxin nano antibody of the present invention are shown in SEQ ID NO.8-9. The antibody has good affinity with the target antigen, and the dissociation constant Kd value is about 73.1nM, and can be used for digoxin content determination, nucleic acid probe detection and neutralization and detoxification of digoxin in vivo. The antibody has the advantages of small size, high stability, low cost, low immunogenicity, etc., and has good application prospects.
Description
技术领域Technical Field
本发明涉及一种抗地高辛纳米抗体的制备及其应用。The invention relates to the preparation and application of an anti-digoxin nano antibody.
背景技术Background Art
强心甾是一种分布于夹竹桃科、玄参科等药用植物(如毛花洋地黄)与动物药蟾酥中的甾类结构化合物,具有很高的药用价值。地高辛是强心甾的代表药物,临床上被广泛用于治疗低输出量型充血性心力衰竭、心房颤动、心房扑动、阵发性室上性心动过速等心血管疾病,疗效确切,历史悠久(Muk et al.2020)。国内外学者发现在人体内存在内源性地高辛,与心血管疾病、免疫系统疾病、肿瘤等的发生与发展有极其密切的联系,被推测是疾病潜在的生物标志之一(Hamlyn et al.1982,Manunta et al.2011,Yang et al.2023)。除具有生理与药理活性外,地高辛也是非放射性核酸探针标记的常用试剂,广泛用于核酸分子杂交实验,具有无放射性污染、灵敏度高、检测快速等诸多优势(Hafner et al.2000)。Cardiotonic steroids are steroidal compounds distributed in medicinal plants such as Apocynaceae and Scrophulariaceae (such as Digitalis purpurogena) and animal medicine Toad Venom, and have high medicinal value. Digoxin is a representative drug of cardiotonic steroids. It is widely used in the clinic to treat cardiovascular diseases such as low-output congestive heart failure, atrial fibrillation, atrial flutter, paroxysmal supraventricular tachycardia, etc. It has a definite effect and a long history (Muk et al. 2020). Domestic and foreign scholars have found that endogenous digoxin exists in the human body and is closely related to the occurrence and development of cardiovascular diseases, immune system diseases, tumors, etc. It is speculated to be one of the potential biomarkers of the disease (Hamlyn et al. 1982, Manunta et al. 2011, Yang et al. 2023). In addition to its physiological and pharmacological activities, digoxin is also a commonly used reagent for non-radioactive nucleic acid probe labeling. It is widely used in nucleic acid molecular hybridization experiments and has many advantages such as no radioactive pollution, high sensitivity, and rapid detection (Hafner et al. 2000).
虽然地高辛是临床心血管疾病常用药物,但普遍认为该药治疗窗口相对较窄,个体差异大,稍有不慎很容易造成急性地高辛中毒与病人死亡,因此有必要开发高亲和力、免疫原性低的地高辛中和抗体,以应对临床发生的快速地高辛中毒,减少死亡。其次,内源性地高辛在多种疾病中具有潜在生理病理功能,但含量低,常规ELISA方法检出困难,有必要开发高亲和力地高辛抗体提高内源性地高辛的检测灵敏度,并进一步揭示该活性物质的作用机制,发现潜在生物标志物与药物作用靶标。此外,鉴于地高辛在核酸探针标记与杂交检测中的重要应用价值,也很有必要开发相对传统抗体亲和力更强、成本更低的地高辛抗体,以进一步提高检测灵敏度,降低检测成本。Although digoxin is a commonly used drug for clinical cardiovascular diseases, it is generally believed that the drug has a relatively narrow therapeutic window and large individual differences. If you are not careful, it is easy to cause acute digoxin poisoning and patient death. Therefore, it is necessary to develop digoxin neutralizing antibodies with high affinity and low immunogenicity to deal with rapid digoxin poisoning that occurs clinically and reduce deaths. Secondly, endogenous digoxin has potential physiological and pathological functions in many diseases, but its content is low and it is difficult to detect with conventional ELISA methods. It is necessary to develop high-affinity digoxin antibodies to improve the detection sensitivity of endogenous digoxin, and further reveal the mechanism of action of this active substance, and discover potential biomarkers and drug targets. In addition, given the important application value of digoxin in nucleic acid probe labeling and hybridization detection, it is also necessary to develop digoxin antibodies with stronger affinity and lower cost than traditional antibodies to further improve detection sensitivity and reduce detection costs.
目前针对地高辛的抗体多为传统方法制备的兔多克隆抗体或者鼠杂交瘤单克隆抗体,存在分子量大、免疫原性高、穿透力弱等缺点,且制备周期长,成本高。纳米抗体是一种仅存在于骆驼科动物(羊驼、单双峰骆驼及美洲驼)和一些软骨鱼(鲨鱼和银鲛)体内天然缺失轻链的单域重链抗体,是最小的功能性抗原结合片段。相比于传统抗体,纳米抗体的分子量小,其分子质量仅为传统单克隆抗体的1/10左右,约为15kDa左右,且可实现在微生物体内的可溶性表达,大大缩短生产周期、降低制备成本。纳米抗体还具有较低的免疫原性、较高的耐热、耐酸碱性能,在疾病检测、治疗等领域具有很大的潜在应用价值(De Meyer etal.2014)。At present, most antibodies against digoxin are rabbit polyclonal antibodies or mouse hybridoma monoclonal antibodies prepared by traditional methods, which have the disadvantages of large molecular weight, high immunogenicity, weak penetration, long preparation cycle and high cost. Nanobodies are single-domain heavy chain antibodies that naturally lack light chains and are only found in camelids (alpacas, Bactrian camels and llamas) and some cartilaginous fish (sharks and chimaeras). They are the smallest functional antigen-binding fragments. Compared with traditional antibodies, nanobodies have a small molecular weight, with a molecular weight of only about 1/10 of that of traditional monoclonal antibodies, about 15 kDa, and can be expressed soluble in microorganisms, greatly shortening the production cycle and reducing preparation costs. Nanobodies also have low immunogenicity, high heat resistance, acid and alkali resistance, and have great potential application value in disease detection and treatment (De Meyer et al. 2014).
发明内容Summary of the invention
本发明提供一种地高辛的纳米抗体,该纳米抗体与地高辛分子有着较高的亲和力,可用于地高辛含量测定、地高辛核酸探针检测与体内地高辛的中和封闭。The invention provides a nano antibody of digoxin, which has a high affinity with digoxin molecules and can be used for digoxin content determination, digoxin nucleic acid probe detection and digoxin neutralization and blocking in vivo.
本发明地高辛纳米抗体含有由SEQ ID NO.1:GRSISGFA所示的CDR1,由SEQIDNO.2:IMWSGRDT所示的CDR2,由SEQ IDNO.3:AAATRLPLNSASSYNI所示的CDR3,由SEQ IDNO.4:EVQLVDSGGGLVQP所示的FR1,由SEQ ID NO.5:MGWFRQGPGKEREFVSS所示的FR2,由SEQID NO.6:YYADSVKGRFTISRDPAKNTVYLQMNSLKPEDTAVYYC所示的FR3和由SEQ ID NO.7:WGQGTQVTVSS所示的FR4。The digoxin nanobody of the present invention contains CDR1 shown by SEQ ID NO.1: GRSISGFA, CDR2 shown by SEQ ID NO.2: IMWSGRDT, CDR3 shown by SEQ ID NO.3: AAATRLPLNSASSYNI, FR1 shown by SEQ ID NO.4: EVQLVDSGGGLVQP, FR2 shown by SEQ ID NO.5: MGWFRQGPGKEREFVSS, FR3 shown by SEQ ID NO.6: YYADSVKGRFTISRDPAKNTVYLQMNSLKPEDTAVYYC and FR4 shown by SEQ ID NO.7: WGQGTQVTVSS.
所述地高辛纳米抗体的氨基酸序列为SEQ ID NO.8:The amino acid sequence of the digoxin nanobody is SEQ ID NO.8:
本发明提供一种基因,其编码本发明所述的地高辛纳米抗体。The present invention provides a gene, which encodes the digoxin nanobody of the present invention.
所述基因的核苷酸序列为SEQ ID NO.9:The nucleotide sequence of the gene is SEQ ID NO.9:
本发明提供一种大肠杆菌表达宿主,其表达本发明所述的地高辛纳米抗体,和/或包含本发明所述的基因或核酸构建体。The present invention provides an Escherichia coli expression host, which expresses the digoxin nanobody described in the present invention and/or contains the gene or nucleic acid construct described in the present invention.
本发明提供了所述地高辛纳米抗体在制备ELISA方法检测地高辛含量的应用。The present invention provides the use of the digoxin nano-antibody in preparing an ELISA method for detecting digoxin content.
本发明提供一种检测地高辛的试剂盒,所述试剂盒基于竞争ELISA法检测地高辛,所述试剂盒以SEQ ID NO.8所示的纳米抗体为检测抗体。The present invention provides a kit for detecting digoxin. The kit detects digoxin based on a competitive ELISA method, and the kit uses a nano antibody shown in SEQ ID NO.8 as a detection antibody.
本发明提供一种用地高辛纳米抗体作为二抗检测地高辛标记的核酸探针的应用。The present invention provides an application of using digoxin nano antibody as a secondary antibody to detect a digoxin-labeled nucleic acid probe.
本发明提供一种能够在体内发挥中和与拮抗地高辛毒性的地高辛纳米抗体的应用。The present invention provides an application of a digoxin nano-antibody capable of neutralizing and antagonizing digoxin toxicity in vivo.
与现有技术相比,本发明具有以下优点:Compared with the prior art, the present invention has the following advantages:
1.本发明提供的地高辛纳米抗体与地高辛具有较强的亲和力(解离平衡常数Kd≈73nM),能高效与地高辛抗原结合。1. The digoxin nanobody provided by the present invention has a strong affinity with digoxin (dissociation equilibrium constant Kd≈73nM) and can efficiently bind to the digoxin antigen.
2.本纳米抗体与传统单克隆抗体相比,具有亲和力更强,分子量小等诸多优点,且能通过原核细胞进行大量可溶性表达,成本低廉。2. Compared with traditional monoclonal antibodies, this nanobody has many advantages such as stronger affinity and smaller molecular weight, and can be expressed in large quantities in a soluble form through prokaryotic cells at low cost.
3.本抗体分子量小,易于进行人源化改造,方便与多种基团偶联,能较大程度地拓展该抗体的实际使用功能与多场景应用价值。3. This antibody has a small molecular weight, is easy to humanize, and is convenient to couple with a variety of groups, which can greatly expand the actual use function and multi-scenario application value of the antibody.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
图1为地高辛与BSA偶联物的SDS-PAGE电泳结果,BSA为牛血清白蛋白,DIG-BSA为地高辛-牛血清白蛋白偶联物Figure 1 is the SDS-PAGE electrophoresis result of digoxin and BSA conjugate, BSA is bovine serum albumin, DIG-BSA is digoxin-bovine serum albumin conjugate
图2为两轮PCR的琼脂糖电泳结果,左图泳道1、2:第一轮PCR扩增产物;右图泳道1、2:第二轮PCR扩增产物Figure 2 shows the agarose electrophoresis results of two rounds of PCR. Lanes 1 and 2 on the left: products of the first round of PCR amplification; Lanes 1 and 2 on the right: products of the second round of PCR amplification
图3为载体及片段酶切结果,泳道1、2:PCR产物酶切结果;泳道3:Pcomb3xss载体的酶切结果。FIG3 shows the results of restriction digestion of vectors and fragments, lanes 1 and 2: the results of restriction digestion of PCR products; lane 3: the results of restriction digestion of Pcomb3xss vector.
图4为噬菌体ELISA结果,以空白对照5倍以上数值分界线选定阳性克隆与阴性克隆。Figure 4 shows the results of phage ELISA, with positive clones and negative clones selected based on a numerical cutoff of 5 times that of the blank control.
图5为候选克隆IMGT比对结果。FIG5 shows the IMGT alignment results of candidate clones.
图6为纳米抗体原核蛋白表达与纯化。Figure 6 shows the expression and purification of nanobody prokaryotic protein.
图7为阳离子交换树脂纯化结果,泳道1-8对应离子交换柱不同保留时间收集的组分批次。FIG7 shows the purification results of the cation exchange resin, where lanes 1-8 correspond to batches of components collected at different retention times on the ion exchange column.
图8为Western Blot检测结果,组分3、4、5为图七所示的阳离子交换树脂收集的蛋白组分。FIG8 is a Western Blot test result, where components 3, 4, and 5 are protein components collected by the cation exchange resin shown in FIG7 .
图9为等温滴定量热法检测结果。FIG9 is the isothermal titration calorimetry test results.
图10为微量热泳动检测结果。FIG. 10 shows the results of micro-thermophoresis detection.
图11为ELISA标准曲线结果。FIG. 11 shows the ELISA standard curve results.
图12为地高辛纳米抗体在地高辛标记核酸检测中的应用结果。FIG. 12 shows the application results of digoxin nanoantibody in digoxin-labeled nucleic acid detection.
图13为纳米抗体的稳定性分析结果。Figure 13 shows the results of stability analysis of Nanobodies.
具体实施方式DETAILED DESCRIPTION
下面结合实施例对本发明作进一步的说明,但实施例的描述不对本发明的保护范围产生任何限制。The present invention is further described below in conjunction with embodiments, but the description of the embodiments does not impose any limitation on the protection scope of the present invention.
除非另有定义,本文所使用的所有的技术术语和科学术语与属于本发明的技术领域的技术人员通常理解的含义相同,本文中在本发明的说明书中所使用的术语只是为了描述具体的实施例的目的,不是旨在限制本发明。Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by technicians in the technical field to which the present invention belongs. The terms used in the specification of the present invention are only for the purpose of describing specific embodiments and are not intended to limit the present invention.
下列实施例中所用的物质或仪器,如果未进行特殊说明的话,均可以从常规的商用渠道获取。Unless otherwise specified, the materials and instruments used in the following examples can be obtained from conventional commercial channels.
实施例一:地高辛-BSA的偶联与羊驼的免疫Example 1: Conjugation of digoxin-BSA and immunization of alpacas
1.地高辛-BSA的偶联1. Conjugation of digoxin-BSA
采用高碘酸钾氧化法将地高辛与BSA载体进行偶联。采用SDS-PAGE蛋白电泳对偶联产物进行检测,如图1所示,标记后的地高辛-BSA电泳有明显的拖带,主带变淡,在66kDa以上有明显的不均匀产物分布,确认偶联成功。Digoxin was coupled to the BSA carrier using potassium periodate oxidation. The coupled product was detected by SDS-PAGE protein electrophoresis. As shown in Figure 1, the labeled digoxin-BSA electrophoresis had obvious dragging, the main band became lighter, and there was obvious uneven product distribution above 66 kDa, confirming that the coupling was successful.
2.动物免疫2. Animal Immunization
将偶联后的地高辛-BSA作为免疫原,免疫空白羊驼,动物免疫的方案如下表所示,每次免疫后采血,监测免疫反应。The coupled digoxigenin-BSA was used as an immunogen to immunize blank alpacas. The animal immunization scheme is shown in the following table. Blood was collected after each immunization to monitor the immune response.
通过间接ELISA法检测免疫羊驼血清效价,如表1所示相比于未经免疫的羊驼,第一次免疫后羊驼抗原血清效价水平提高到103倍,第三次免疫后血清效价水平提高到104倍,第五次免疫后血清效价水平达到105倍。这一结果表明,抗原在羊驼体内产生较强的免疫反应。The serum titer of the immunized alpacas was detected by indirect ELISA. As shown in Table 1, compared with the unimmunized alpacas, the serum titer level of the alpacas antigen increased to 10 3 times after the first immunization, 10 4 times after the third immunization, and 10 5 times after the fifth immunization. This result shows that the antigen produces a strong immune response in the alpaca.
表1羊驼血清效价检测表Table 1 Alpaca serum titer test table
实施例二:地高辛纳米抗体噬菌体文库的构建Example 2: Construction of digoxin nanoantibody phage library
实验方法Experimental methods
1.cDNA的合成和巢式PCR扩增1. cDNA Synthesis and Nested PCR Amplification
取第六轮免疫后的羊驼静脉血液,通过淋巴细胞分离液分离得到淋巴细胞,用Trizol总RNA抽提试剂盒提取淋巴细胞中的总RNA,并通过紫外分光光度计及RNA电泳检测RNA的浓度及纯度。将RNA作为模板,通过逆转录获得cDNA库。其中逆转录10μL体系所用RNA的量为500ng,按下表所示配制逆转录体系:After the sixth round of immunization, alpaca venous blood was obtained, lymphocytes were separated by lymphocyte separation solution, total RNA in lymphocytes was extracted by Trizol total RNA extraction kit, and the concentration and purity of RNA were detected by UV spectrophotometer and RNA electrophoresis. RNA was used as a template to obtain a cDNA library by reverse transcription. The amount of RNA used in the reverse transcription 10μL system was 500ng, and the reverse transcription system was prepared as shown in the following table:
将cDNA为模板,使用PCR扩增出含有重链可变区VHH基因的片段,按下表所示配制PCR体系:Using cDNA as a template, PCR was used to amplify the fragment containing the heavy chain variable region VHH gene. The PCR system was prepared as shown in the following table:
将体系配制完成,置于PCR仪中扩增,反应程序如下所示:After the system is prepared, it is placed in a PCR instrument for amplification. The reaction procedure is as follows:
特异性扩增引物如下:Specific amplification primers are as follows:
为了增加文库的容量,本发明以第一轮胶回收产物为PCR模版,按照下表条件所示,进行第二轮巢式PCR反应:In order to increase the capacity of the library, the present invention uses the first round of gel recovery products as PCR templates and performs a second round of nested PCR reaction according to the conditions shown in the following table:
将体系配制完成,置于PCR仪中扩增,第二轮PCR反应程序如下:After the system is prepared, it is placed in a PCR instrument for amplification. The second round of PCR reaction procedure is as follows:
特异性扩增引物如下:Specific amplification primers are as follows:
2.噬菌体文库的构建2. Construction of phage library
本发明采用pComb3xss噬菌粒载体作为噬菌体文库构建的载体,首先,将载体及巢式PCR产物同时用限制性内切酶Sfi I酶切。The present invention adopts pComb3xss phagemid vector as the vector for constructing the phage library. Firstly, the vector and the nested PCR product are simultaneously digested with restriction endonuclease Sfi I.
配制20μL反应体系如下:Prepare 20 μL reaction system as follows:
载体与片段同时在50℃酶切60min后琼脂糖电泳,回收酶切载体及片段,用于连接反应。本发明采用T4连接酶进行连接,取20ng酶切的载体和8ng酶切的插入片段(摩尔比为1∶4)进行连接,按下表配制连接体系:The vector and the fragment were simultaneously digested at 50°C for 60 minutes and then subjected to agarose electrophoresis to recover the digested vector and the fragment for ligation. The present invention uses T4 ligase for ligation, and 20 ng of the digested vector and 8 ng of the digested insert (molar ratio of 1:4) are taken for ligation, and the ligation system is prepared according to the following table:
随后酶连体系在22℃下连接30min,连接完成后转化至TG1感受态37℃恒温培养箱过夜培养。The enzyme ligation system was then connected at 22°C for 30 min, and after the connection was completed, it was transformed into a TG1 competent cell and cultured in a 37°C constant temperature incubator overnight.
实验结果:Experimental results:
1.巢式PCR扩增1. Nested PCR Amplification
本发明采用巢式PCR的方式扩增VHH基因,如图2所示将上文提取的总RNA逆转录,获得cDNA,用两对特异性引物两轮PCR扩增VHH基因片段。将首轮PCR扩增产物进行琼脂糖凝胶电泳分析。泳道1可见一个约700bp大小的DNA条带,胶回收目标条带,作为下一轮PCR的模板。将第二轮PCR产物进行琼脂糖凝胶电泳分析,得到一个约400bp大小DNA条带,胶回收目标条带产物供后续构建重组质粒。两轮PCR扩增产物条带大小均符合预期DNA片段大小,可用于噬菌体文库构建。The present invention adopts nested PCR to amplify VHH gene. As shown in FIG2 , the total RNA extracted above is reverse transcribed to obtain cDNA, and two pairs of specific primers are used to amplify VHH gene fragments in two rounds of PCR. The first round of PCR amplification products are subjected to agarose gel electrophoresis analysis. A DNA band of about 700 bp in size can be seen in lane 1, and the target band is recovered by gel as a template for the next round of PCR. The second round of PCR products are subjected to agarose gel electrophoresis analysis to obtain a DNA band of about 400 bp in size, and the target band product is recovered by gel for subsequent construction of recombinant plasmid. The band sizes of the two rounds of PCR amplification products are consistent with the expected DNA fragment size, and can be used for phage library construction.
2.文库的构建2. Library Construction
本发明采用Pcomb3xss载体进行噬菌体文库的构建,如图所示,将扩增后VHH片段产物与噬菌粒载体pComb3xss酶切,两者均采用Sfi I酶进行单酶切。如图3显示清晰载体酶切条带分别1700bp与3200bp大小,符合预期载体酶切条带大小,达到较好的酶切效果。将酶切载体与片段按比例连接,得到目的噬菌粒载体。The present invention adopts Pcomb3xss vector to construct phage library. As shown in the figure, the VHH fragment product after amplification and the phagemid vector pComb3xss are digested, and both are digested by Sfi I enzyme. As shown in Figure 3, clear vector digestion bands are 1700bp and 3200bp in size, which are consistent with the expected vector digestion band size and achieve good digestion effect. The digestion vector and the fragment are connected in proportion to obtain the target phagemid vector.
实施例三:噬菌体展示文库的淘选及阳性克隆的鉴定Example 3: Panning of phage display library and identification of positive clones
实验方法:Experimental methods:
1.噬菌体文库的构建1. Construction of phage library
本发明采用M13KO7辅助噬菌体进行超感染,将文库平板克隆全部刮下,用10mL2×TY培养基稀释冻存,取100μL菌液加入一个装有2×TY液体培养的锥形瓶中,恒温摇床摇至细菌生长对数期OD600=0.3~0.5。按照M13KO7辅助噬菌体∶菌液=1∶100的体积比例,加入辅助噬菌体,37℃恒温培养箱中静置30min。将菌液移至50mL离心管在4℃下2700rpm离心10min。将离心沉淀重悬,加至250mL 2×TY+100mg/mL氨苄青霉素+50mg/mL卡纳霉素液体培养基中。设置水平摇床参数37℃,225rpm摇晃培养过夜16h。将培养物收集,在4℃下20000g离心30min。将上清加入1/4体积的PEG8000/NaCl,颠倒混匀,冰浴不少于30min。在4℃下4000rpm离心30min,弃上清。将噬菌体沉淀加入1mL PBS溶液重悬并置于1.5mL Eppendorf管中,在4℃下20000g离心1min,收集离心上清,取少量用于噬菌体滴度的测定,其余冻存于-80℃冰箱保存。本发明采用双层琼脂法测定噬菌体滴度,用LB培养基稀释噬菌体至10-1至10-10pfu,分别取各稀释度噬菌体1μL于TG1菌液100μL混匀,37℃静置20min后,分别加入3mL顶层琼脂,混匀后倾倒于LB固体培养基平板,37℃过夜培养,计数空斑并计算噬菌体滴度。The present invention uses M13KO7 helper phage for super infection, scrapes all the library plate clones, dilutes and freezes them with 10mL 2×TY culture medium, takes 100μL of bacterial solution and adds it to a conical flask containing 2×TY liquid culture, and shakes it on a constant temperature shaker until the bacteria grow in the logarithmic phase OD600 = 0.3-0.5. Add helper phage according to the volume ratio of M13KO7 helper phage: bacterial solution = 1:100, and let it stand in a 37°C constant temperature incubator for 30 minutes. Move the bacterial solution to a 50mL centrifuge tube and centrifuge at 2700rpm for 10 minutes at 4°C. Resuspend the centrifugal precipitate and add it to 250mL 2×TY+100mg/mL ampicillin+50mg/mL kanamycin liquid culture medium. Set the horizontal shaker parameters to 37°C, shake at 225rpm and culture overnight for 16 hours. Collect the culture and centrifuge at 20000g for 30 minutes at 4°C. Add 1/4 volume of PEG8000/NaCl to the supernatant, mix by inversion, and place in an ice bath for no less than 30 minutes. Centrifuge at 4000rpm for 30 minutes at 4°C, and discard the supernatant. Add 1mL PBS solution to the phage precipitate and resuspend it in a 1.5mL Eppendorf tube, centrifuge at 20000g for 1min at 4°C, collect the centrifugal supernatant, take a small amount for the determination of phage titer, and freeze the rest in a -80°C refrigerator. The present invention uses a double-layer agar method to determine the phage titer, dilute the phage with LB culture medium to 10-1 to 10-10 pfu, take 1μL of each dilution phage in 100μL of TG1 bacterial solution, mix, stand at 37°C for 20min, add 3mL of top agar, mix and pour on LB solid culture medium plate, culture overnight at 37°C, count plaques and calculate phage titer.
2.噬菌体文库的淘选2. Panning of phage library
按照结合、洗涤、洗脱、扩增的方式,对上述噬菌体展示纳米抗体文库进行亲和淘选,具体如下:The above phage-displayed nanoantibody library was affinity panned in the manner of binding, washing, eluting, and amplification, as follows:
1.抗原包被:选用抗原包被缓冲液将地高辛-OVA包被在96孔酶标板上,三轮包被浓度依次为15μg/mL、10μg/mL和7μg/mL,过夜包被,PBST洗板5遍。1. Antigen coating: Use antigen coating buffer to coat digoxigenin-OVA on a 96-well ELISA plate. The coating concentrations for three rounds are 15 μg/mL, 10 μg/mL and 7 μg/mL, respectively. Coat overnight and wash the plate 5 times with PBST.
2.封闭:5%BSA封闭,PBST洗板5次。2. Blocking: Block with 5% BSA and wash the plate 5 times with PBST.
3.调整噬菌体滴度至10-11pfu/mL,加入100μL噬菌体,共孵育2h,洗板10次。3. Adjust the phage titer to 10 -11 pfu/mL, add 100 μL of phage, incubate for 2 hours, and wash the plate 10 times.
4.洗脱:加入100μL甘氨酸洗脱,15min后加入Tris-HCl中和,结束洗脱。4. Elution: Add 100 μL of glycine for elution. After 15 minutes, add Tris-HCl for neutralization to end the elution.
5.侵染:洗脱液侵染XL1-Blue大肠杆菌5. Infection: Eluate is infected with XL1-Blue Escherichia coli
6.检测滴度6. Detection Titer
7.扩增:将感染后的细菌涂布平板,然后收集所有菌落,M13KO7辅助噬菌体超感染。7. Amplification: Spread the infected bacteria on a plate, collect all colonies, and superinfect with M13KO7 helper phage.
8.进行下一轮筛选,共三轮。8. Proceed to the next round of screening, a total of three rounds.
3.阳性克隆的鉴定3. Identification of positive clones
阳性克隆的筛选使用噬菌体ELISA筛选。具体为,在第三轮筛选的菌平板中挑选60个克隆,至96孔深孔板中,加入M13K07辅助噬菌体超感染14h,离心后取100μL的上清液转移至一个预先包被有地高辛-OVA的96孔酶标板中,37℃孵育45min;PBST洗板6次,加入HRP标记的抗M13单克隆抗体,100μL/孔,37℃孵育45mm;PBST洗板6次,加入TMB显色液,100μL/孔,37℃孵育10min;加入2mol/L的稀硫酸,50μL/孔,终止反应,立即用酶标仪读取OD450值。将高于阴性对照5倍的孔进行测序,得到最终的纳米抗体序列。The screening of positive clones was performed using phage ELISA. Specifically, 60 clones were selected from the bacterial plate in the third round of screening, and superinfected in a 96-well deep-well plate with M13K07 auxiliary phage for 14 hours. After centrifugation, 100 μL of the supernatant was transferred to a 96-well ELISA plate pre-coated with digoxigenin-OVA, and incubated at 37°C for 45 minutes; the plate was washed 6 times with PBST, and HRP-labeled anti-M13 monoclonal antibody was added, 100 μL/well, and incubated at 37°C for 45 minutes; the plate was washed 6 times with PBST, and TMB colorimetric solution was added, 100 μL/well, and incubated at 37°C for 10 minutes; 2 mol/L dilute sulfuric acid was added, 50 μL/well, the reaction was terminated, and the OD 450 value was immediately read with an ELISA reader. The wells that were 5 times higher than the negative control were sequenced to obtain the final nanoantibody sequence.
实验结果:Experimental results:
1.噬菌体文库的富集与淘选1. Enrichment and panning of phage libraries
在原始文库构建完成后,本发明将对噬菌体文库共进行3轮生物淘选,第一轮淘选,包被抗原地高辛-OVA浓度为15μg/mL;第二轮淘选,包被抗原浓度为10μg/mL;第三轮淘选,包被抗原浓度为7μg/mL。结果如表2所示,第三轮淘选相比于第一轮阳性克隆数量富集约1000倍,回收率得到明显的提高,并且对于噬菌体的投入洗脱比例,第二轮和第三轮淘选趋近稳定,进一步表明阳性克隆得到显著富集。After the original library is constructed, the present invention will perform 3 rounds of bio-panning on the phage library. In the first round of panning, the coating antigen digoxin-OVA concentration is 15 μg/mL; in the second round of panning, the coating antigen concentration is 10 μg/mL; in the third round of panning, the coating antigen concentration is 7 μg/mL. The results are shown in Table 2. Compared with the first round, the number of positive clones in the third round of panning is enriched by about 1000 times, the recovery rate is significantly improved, and the input-elution ratio of phages is close to stability in the second and third rounds of panning, further indicating that positive clones are significantly enriched.
表2噬菌体富集参数表Table 2 Phage enrichment parameters
2.噬菌体ELISA及阳性克隆的筛选2. Phage ELISA and screening of positive clones
本发明通过间接ELISA的方法筛选阳性克隆。从富集文库中挑选单克隆多轮筛选,间接ELISA检测单克隆的外周质表达产物。如图4所示,选取空白对照OD450数值5倍以上的指标为分界线,最终挑选多个阳性克隆进行DNA测序。选取最佳克隆进行后续实验。其编码针对地高辛的纳米抗体。The present invention screens positive clones by an indirect ELISA method. Monoclones are selected from the enriched library for multiple rounds of screening, and the periplasmic expression products of the monoclones are detected by indirect ELISA. As shown in FIG4 , an index of 5 times or more of the blank control OD 450 value is selected as a dividing line, and multiple positive clones are finally selected for DNA sequencing. The best clone is selected for subsequent experiments. It encodes a nano antibody against digoxin.
对其氨基酸序列进行分析,具有典型的纳米抗体的稳定结构,其框架区FR区和互补决定区CDR区的氨基酸序列分别如图5所示。Analysis of its amino acid sequence showed that it had a typical stable structure of a nanobody, and the amino acid sequences of its framework region FR and complementary determining region CDR were shown in FIG5 , respectively.
实施例四:纳米抗体的表达和纯化Example 4: Expression and purification of nanobodies
实验方法Experimental methods
1.原核表达载体的构建1. Construction of prokaryotic expression vector
本发明将pET-28a作为表达载体,酶切位点选择为NheI与XhoI,以上述阳性克隆为模板,两端添加酶切位点NheI-BamHI进行PCR,PCR产物进行琼脂糖电泳,胶回收片段,测定浓度。The present invention uses pET-28a as an expression vector, selects NheI and XhoI as restriction sites, uses the above positive clone as a template, adds restriction sites NheI-BamHI at both ends to perform PCR, performs agarose electrophoresis on the PCR product, recovers the fragments on the gel, and determines the concentration.
PCR扩增体系如下表所示:The PCR amplification system is shown in the following table:
反应体系如下表;The reaction system is as follows:
特异性扩增引物序列如下表:The specific amplification primer sequences are as follows:
将pET-28a质粒和上述胶回收产物使用Nhe I与Xho I酶切,在37℃条件下酶切30min后琼脂糖电泳检测,胶回收酶切片段,测定浓度,酶切体系如下表所示:The pET-28a plasmid and the above gel recovery product were digested with Nhe I and Xho I, and then digested for 30 min at 37°C by agarose electrophoresis. The digested fragments were recovered by gel and the concentration was determined. The digestion system is shown in the following table:
将酶切后的载体和片段以摩尔比1∶4进行连接,连接反应的体系如下表所示,The vector and fragment after enzyme digestion were connected at a molar ratio of 1:4. The connection reaction system is shown in the following table.
22℃连接30min后,转化至BL21(DE3)感受态细胞,翌日取阳性克隆进行测序。After ligation at 22°C for 30 min, the cells were transformed into BL21(DE3) competent cells, and positive clones were obtained for sequencing the next day.
2.纳米抗体的原核表达2. Prokaryotic expression of nanobodies
取测序正确的菌落诱导蛋白表达,4℃下,用100mM的IPTG诱导16h,超声破碎菌液后收集上清后经过镍柱纯化,用洗涤液洗去杂蛋白,加入洗脱液洗脱纳米抗体,在得到的纳米抗体溶液中加入PBS进行超滤(3600rpm/min,10min,重复2次),收集超滤管小管内的液体。The correctly sequenced colonies were selected to induce protein expression at 4°C with 100 mM IPTG for 16 h. The bacterial solution was ultrasonically disrupted and the supernatant was collected and purified through a nickel column. The impurities were washed away with a washing solution, and the nanoantibodies were eluted with an eluent. PBS was added to the obtained nanoantibody solution for ultrafiltration (3600 rpm/min, 10 min, repeated twice), and the liquid in the small tube of the ultrafiltration tube was collected.
使用AKTA蛋白纯化仪离子交换色谱进一步纯化目的蛋白,缓冲液体系为0.02MTris-HCl,l M NaCl,pH 8.0。根据仪器压力设定系统流速为0.85mL/min,预平衡色谱柱后使用Sample loop进行上样,使用自动组分收集器收集不同时间的流出组分。SDS-PAGE电泳分析检测不同组分蛋白,将蛋白组分冻于-80℃冰箱保存。The target protein was further purified using AKTA protein purifier ion exchange chromatography, with a buffer system of 0.02MTris-HCl, 1 M NaCl, pH 8.0. The system flow rate was set to 0.85mL/min according to the instrument pressure, and the sample loop was used to load the sample after pre-equilibration of the chromatographic column, and the effluent fractions at different times were collected using an automatic fraction collector. SDS-PAGE electrophoresis analysis was performed to detect different component proteins, and the protein fractions were frozen and stored in a -80℃ refrigerator.
实验结果:Experimental results:
1.纳米抗体的表达纯化1. Expression and purification of nanobodies
本发明构建原核表达重组质粒,4℃下,用100mM的IPTG诱导16h,将蛋白裂解液及纯化后的蛋白洗脱液进行SDS-PAGE电泳分析,结果如图6所示。The present invention constructs a prokaryotic expression recombinant plasmid, and induces it with 100 mM IPTG for 16 h at 4° C. The protein lysate and the purified protein eluate are subjected to SDS-PAGE electrophoresis analysis. The results are shown in FIG6 .
2.纳米抗体进一步纯化2. Further purification of nanobodies
本发明采用AKTA蛋白纯化仪器,离子交换色谱对目的蛋白进行进一步纯化,如图7所示,SDS-PAGE电泳分析了不同保留时间的蛋白样品,在第3、4、5管蛋白中得到了纯度>95%的目的蛋白样品。同时WB分析结果如图8所示14kDa附近有明显的纳米抗体条带。The present invention uses AKTA protein purification instrument and ion exchange chromatography to further purify the target protein. As shown in Figure 7, SDS-PAGE electrophoresis analyzed protein samples with different retention times, and obtained target protein samples with purity > 95% in the 3rd, 4th and 5th tube proteins. At the same time, WB analysis results show that there is an obvious nano antibody band near 14kDa as shown in Figure 8.
实施例五:地高辛纳米抗体结合力的测定Example 5: Determination of digoxin nanobody binding capacity
实验方法:Experimental methods:
1.等温滴定量热法检测纳米抗体亲和力1. Isothermal titration calorimetry to detect the affinity of nanobodies
将地高纳米抗体稀释至浓度为20μM(用PBS溶解),放入样品池中,参比池中放入PBS溶液,将地高辛粉末溶解于PBS中,浓度为200μM,放入滴定注射器中,放置完毕后按照操作手册要求进行滴定加样,测定Kd值。Dilute the digoxin nanoantibody to a concentration of 20 μM (dissolved in PBS) and place it in the sample pool. Place PBS solution in the reference pool. Dissolve digoxin powder in PBS to a concentration of 200 μM and place it in the titration syringe. After placement, perform titration and sample addition according to the requirements of the operating manual to determine the Kd value.
2.MST检测纳米抗体结合力2. MST detection of nanoantibody binding
本发明通过微量热泳动(MST)技术检测抗体蛋白和抗原的亲和力,该方法需要配体分子或者受体蛋白至少一个有荧光标记。本发明选择Monolith RED-NHS二代蛋白标记试剂盒对目标抗体进行标记。The present invention detects the affinity of antibody protein and antigen by micro-thermophoresis (MST) technology, and the method requires at least one of the ligand molecule or receptor protein to be fluorescently labeled. The present invention selects Monolith RED-NHS second-generation protein labeling kit to label the target antibody.
(一)蛋白标记(I) Protein labeling
在1.5mL Eppendorf管中,加入7μL RED-NHS二代染料与7μL NHS标记缓冲液,吹吸混匀获得终浓度为300μM的染料溶液。另取新1.5mL Eppendorf管,加入90μL蛋白样品(浓度10μM)。取10μL的上述染料溶液加入到蛋白样品中,吹吸混匀获得100μL染料蛋白溶液,在室温避光环境下孵育30min。In a 1.5mL Eppendorf tube, add 7μL RED-NHS second-generation dye and 7μL NHS labeling buffer, pipette and mix to obtain a dye solution with a final concentration of 300μM. Take another new 1.5mL Eppendorf tube and add 90μL protein sample (concentration 10μM). Take 10μL of the above dye solution and add it to the protein sample, pipette and mix to obtain 100μL dye protein solution, and incubate at room temperature in a dark environment for 30min.
(二)标记效率的测定(II) Determination of labeling efficiency
按照如下公式计算标记效率:The labeling efficiency was calculated according to the following formula:
标记效率(DOL)计算公式如下:The labeling efficiency (DOL) is calculated as follows:
首先梯度稀释地高辛溶液,配制含有0.05%吐温-20的PBS溶液,用该溶液将地高辛稀释至1μM,并吸取10μL加入一个0.2mL的PCR管中,并将该PCR管标记为1号PCR管依次编号直至16号。在2号至16号PCR管中加入10μL含有0.05%吐温-20的PBS溶液,梯度稀释1号PCR管至16号PCR管,使后一管的地高辛配体浓度恰好为前一管的一半。将待测标记好的纳米抗体稀释至10nM浓度,在每一个PCR管中加入10μL标记好的纳米抗体溶液,用移液器充分吹打混匀。使每一个PCR管的待测抗体蛋白浓度均为5nM。在PCR管加入等体积的标记好的抗体蛋白,吸入毛细管,通过MST检测抗体与配体的亲和能力。使用专用毛细管吸取上述PCR管内的液体,注意不要吸取到气泡。上机设置参数,检测纳米抗体与地高辛亲和力。First, dilute the digoxin solution in a gradient, prepare a PBS solution containing 0.05% Tween-20, dilute digoxin to 1 μM with the solution, and pipette 10 μL into a 0.2 mL PCR tube, and mark the PCR tube as PCR tube No. 1 and number it sequentially until No. 16. Add 10 μL of PBS solution containing 0.05% Tween-20 to PCR tubes No. 2 to 16, and gradiently dilute PCR tube No. 1 to PCR tube No. 16, so that the digoxin ligand concentration of the latter tube is exactly half of that of the previous tube. Dilute the labeled nanoantibody to be tested to a concentration of 10 nM, add 10 μL of the labeled nanoantibody solution to each PCR tube, and mix thoroughly with a pipette. Make the concentration of the antibody protein to be tested in each PCR tube 5 nM. Add an equal volume of labeled antibody protein to the PCR tube, suck it into the capillary, and detect the affinity of the antibody and the ligand by MST. Use a special capillary to absorb the liquid in the above PCR tube, and be careful not to absorb bubbles. Set parameters on the machine to detect the affinity of nanoantibodies to digoxin.
实验结果:Experimental results:
1.等温滴定量热法检测纳米抗体亲和力1. Isothermal titration calorimetry to detect the affinity of nanobodies
本发明通过等温滴定量热法测定纳米抗体和地高辛的亲和力,如图9,在298.15K温度下测定得到反应的ΔH=-4.28×106cal/mol,ΔS=-1.12×104cal/mol/deg,ΔG=-9.26Kcal/mol。计算得到Kd值为160nM。The present invention measures the affinity of the nanobody and digoxin by isothermal titration calorimetry, as shown in Figure 9, at 298.15 K, the reaction ΔH = -4.28 × 10 6 cal/mol, ΔS = -1.12 × 10 4 cal/mol/deg, ΔG = -9.26 Kcal/mol. The calculated Kd value is 160 nM.
2.微量热泳动测定纳米抗体亲和力2. Determination of Nanobody Affinity by Microthermophoresis
本发明通过Monolith RED-NHS二代蛋白标记试剂盒对抗体蛋白进行标记核酸染料。使用微量热泳动测定候选抗体蛋白和地高辛之间的亲和力。如图10所示,通过测定蛋白与小分子反应产生的荧光变化从而在较短时间实现亲和力测定,结果显示蛋白荧光分布均匀,表明荧光蛋白标记效果良好,并测得纳米抗体与地高辛的Kd为73.1nM。The present invention uses Monolith RED-NHS second-generation protein labeling kit to label the antibody protein with nucleic acid dye. Microthermophoresis is used to determine the affinity between the candidate antibody protein and digoxin. As shown in Figure 10, the affinity determination is achieved in a relatively short time by measuring the fluorescence change produced by the reaction of the protein with the small molecule. The results show that the protein fluorescence is evenly distributed, indicating that the fluorescent protein labeling effect is good, and the Kd of the nano antibody and digoxin is measured to be 73.1nM.
实施例六:竞争结合法ELISA检测地高辛Example 6: Detection of digoxin by competitive binding ELISA
实验方法:Experimental methods:
1.最佳抗体浓度的摸索1. Exploration of the optimal antibody concentration
加入浓度为200ng/mL的地高辛-OVA 100μL至吸附96孔ELISA板,过夜包被;弃掉孔内液体,用PBST洗涤5遍,加入100μL的OVA室温封闭1h;弃掉孔内液体,用PBST洗涤5遍,加入一系列浓度的生物素标记的地高辛纳米抗体室温孵育2h;弃掉孔内液体,用PBST洗涤5遍,加入100μL链霉素-HRP,室温孵育1h;弃掉孔内液体,用PBST洗涤5遍,加入100μL TMB显色液体,37℃孵育10min后,加入50μL显色终止液。酶标仪于450nm处检测吸光度;选取最佳的抗体浓度用于后续的检测实验。Add 100 μL of digoxin-OVA at a concentration of 200 ng/mL to the adsorbed 96-well ELISA plate and coat overnight; discard the liquid in the well, wash 5 times with PBST, add 100 μL of OVA to block at room temperature for 1 hour; discard the liquid in the well, wash 5 times with PBST, add a series of concentrations of biotin-labeled digoxin nanoantibodies and incubate at room temperature for 2 hours; discard the liquid in the well, wash 5 times with PBST, add 100 μL of streptomycin-HRP, incubate at room temperature for 1 hour; discard the liquid in the well, wash 5 times with PBST, add 100 μL of TMB color development liquid, incubate at 37°C for 10 minutes, and then add 50 μL of color stop solution. The absorbance was detected at 450 nm by an enzyme reader; the optimal antibody concentration was selected for subsequent detection experiments.
2.竞争法ELISA结合实验2. Competitive ELISA Binding Assay
标准曲线的绘制:Drawing of standard curve:
加入浓度为20ng/mL的地高辛-OVA 100μL至高吸附96孔ELISA板,过夜包被;弃掉孔内液体,用PBST洗涤5遍,加入100μL的OVA室温封闭1h;弃掉孔内液体,用PBST洗涤5遍,对于标准品组,加入浓度为20ng/mL、10ng/mL、5ng/mL、2.5ng/mL、1.25ng/mL、0.6ng/mL的地高辛各100μL。对于空白对照组(B0)加入100μL的PBS。对于检测组加入100μL的待测血清样本。在每个样品孔中加入1μg/mL的生物素标记的地高辛纳米抗体室温孵育2h;弃掉孔内液体,用PBST洗涤5遍,加入100μL链霉素-HRP,室温孵育1h;弃掉孔内液体,用PBST洗涤5遍,加入100μL TMB显色液体,37℃孵育10min后,加入50μL显色终止液。酶标仪于450nm处检测吸光度;所获得的每个浓度标准溶液和样本吸光度值的平均值(B)除以第一个空白(0标准)的吸光度值(B0)再乘以100%,即百分吸光度值;以地高辛浓度的对数值为X轴,百分吸光度值为Y轴,绘制标准曲线图。Add 100 μL of digoxin-OVA at a concentration of 20 ng/mL to a high-absorption 96-well ELISA plate and coat overnight; discard the liquid in the wells, wash 5 times with PBST, add 100 μL of OVA and block at room temperature for 1 hour; discard the liquid in the wells, wash 5 times with PBST, and for the standard group, add 100 μL of digoxin at concentrations of 20 ng/mL, 10 ng/mL, 5 ng/mL, 2.5 ng/mL, 1.25 ng/mL, and 0.6 ng/mL. For the blank control group (B0), add 100 μL of PBS. For the test group, add 100 μL of the serum sample to be tested. Add 1 μg/mL of biotin-labeled digoxin nanoantibody to each sample well and incubate at room temperature for 2 hours; discard the liquid in the well, wash 5 times with PBST, add 100 μL of streptomycin-HRP, and incubate at room temperature for 1 hour; discard the liquid in the well, wash 5 times with PBST, add 100 μL of TMB color development liquid, incubate at 37°C for 10 minutes, and then add 50 μL of color development stop solution. The absorbance is detected at 450nm by an enzyme reader; the average value (B) of the absorbance value of each concentration standard solution and sample obtained is divided by the absorbance value (B0) of the first blank (0 standard) and then multiplied by 100%, that is, the percentage absorbance value; draw a standard curve with the logarithm of digoxin concentration as the X-axis and the percentage absorbance value as the Y-axis.
加样回收率实验:Sample recovery experiment:
配置0.1ml,浓度分别为2ng/mL、20ng/mL、200ng/mL的地高辛溶液,检测上述待测样品的的吸光度值,根据测量得到的样品孔平均吸光度值,可从标准曲线上得到地高辛浓度的对数值,求得反对数即为测定样品中的地高辛浓度。计算不同浓度地高辛样品的回收率(Recovery)及变异系数(RSD)。Prepare 0.1 ml of digoxin solution with concentrations of 2 ng/mL, 20 ng/mL, and 200 ng/mL, and detect the absorbance of the above-mentioned samples. According to the average absorbance of the sample wells measured, the logarithm of the digoxin concentration can be obtained from the standard curve, and the antilogarithm is the digoxin concentration in the sample. Calculate the recovery rate (Recovery) and coefficient of variation (RSD) of digoxin samples with different concentrations.
实验结果:Experimental results:
将抗原固定化,确定抗体工作浓度为1μg/mL附近,选取最佳的抗体浓度用于后续的检测实验。基于氨基酸序列如SEQ ID NO:8所示的纳米抗体VHH-A9建立的竞争ELISA标准曲线图。将空白标准品OD450平均值记为B0,将不同的浓度地高辛标准品OD450平均值记为B。以标准品浓度的对数值为横坐标,B/B0比值为纵坐标,进行线性拟合,绘制的标准曲线如图11所示。The antigen was immobilized, and the working concentration of the antibody was determined to be around 1 μg/mL, and the optimal antibody concentration was selected for subsequent detection experiments. A competitive ELISA standard curve diagram was established based on the amino acid sequence of the nanoantibody VHH-A9 shown in SEQ ID NO: 8. The average OD 450 of the blank standard was recorded as B0, and the average OD 450 of the digoxin standard of different concentrations was recorded as B. A linear fit was performed with the logarithmic value of the standard concentration as the horizontal axis and the B/B0 ratio as the vertical axis. The standard curve drawn is shown in Figure 11.
分别加入2ng/mL、20ng/mL、200ng/mL的地高辛,计算得到的回收率及变异系数的结果如表3所示。2 ng/mL, 20 ng/mL, and 200 ng/mL of digoxin were added, and the calculated recovery rates and coefficients of variation are shown in Table 3.
表3地高辛检测及回收率表Table 3 Digoxin detection and recovery rate
实施例七:纳米抗体检测地高辛标记的核酸探针Example 7: Nanobody Detection of Digoxigenin-Labeled Nucleic Acid Probe
实验方法:Experimental methods:
纳米抗体检测地高辛标记的核酸探针:Nanobody detection of digoxigenin-labeled nucleic acid probes:
将地高辛标记的核酸探针溶解至128μM,作为实验的起始浓度。依次梯度稀释地高辛标记的核酸探针,使每后一管的浓度为前一管的1/2。随后用多通道移液器移取1μL梯度稀释的地高辛标记核酸探针溶液,小心滴至NC膜上。使用紫外交联仪紫外交联30min后,过夜孵育生物素标记的纳米抗体。PBST洗涤三次,加入链霉素-HRP,室温孵育1h,PBST洗涤三次后使用ECL发光检测。Dissolve the digoxigenin-labeled nucleic acid probe to 128 μM as the starting concentration of the experiment. Digoxigenin-labeled nucleic acid probes were diluted in sequence so that the concentration of each subsequent tube was 1/2 of the previous tube. Then, 1 μL of the gradient diluted digoxigenin-labeled nucleic acid probe solution was transferred with a multichannel pipette and carefully dropped onto the NC membrane. After UV crosslinking for 30 minutes using a UV crosslinker, the biotin-labeled nanobody was incubated overnight. Wash three times with PBST, add streptavidin-HRP, incubate at room temperature for 1 hour, and use ECL luminescence detection after washing three times with PBST.
纳米抗体稳定性的测定:Determination of Nanobody Stability:
分别将纳米抗体及市售的地高辛单抗置于37℃的孵育箱24h或72h,随后与NC膜上的地高辛标记的核酸探针共孵育,分析检测纳米抗体及市售单抗的最低检测浓度。The nanobody and commercially available digoxigenin monoclonal antibody were placed in an incubator at 37°C for 24 h or 72 h, respectively, and then incubated with the digoxigenin-labeled nucleic acid probe on the NC membrane to analyze and detect the minimum detection concentration of the nanobody and commercially available monoclonal antibody.
实验结果:Experimental results:
如图12的结果所示,地高辛纳米抗体VHH-A9能特异性识别地高辛核酸探针,检测信号强度随着地高辛标记核酸探针浓度的递减而逐渐减弱,最低检测浓度约为2-1pM。As shown in the results of Figure 12, the digoxin nanobody VHH-A9 can specifically recognize the digoxin nucleic acid probe, and the detection signal intensity gradually weakens with the decrease of the concentration of the digoxin-labeled nucleic acid probe, and the lowest detection concentration is about 2-1 pM.
如图13所示,在37℃放置24h,作为对照的地高辛单抗(Dig-mAb)检测地高辛标记的核酸探针的能力下降,最低检测浓度下降至24pM水平,放置72h则基本丧失了结合能力,最低检测浓度下降至27pM水平。与之相对地,地高辛纳米抗体在37℃下放置24h,其结合能力基本无改变,最低检测浓度为约为22pM。即使在在37℃下放置72h,仍维持着24pM最低检测浓度。这一结果表明,地高辛纳米抗体的稳定性显著优于市售地高辛单抗。As shown in Figure 13, after being placed at 37°C for 24 hours, the ability of the control digoxin monoclonal antibody (Dig-mAb) to detect digoxin-labeled nucleic acid probes decreased, and the minimum detection concentration dropped to 24 pM. After being placed for 72 hours, the binding ability was basically lost, and the minimum detection concentration dropped to 2 7 pM. In contrast, the binding ability of the digoxin nanobody was basically unchanged after being placed at 37°C for 24 hours, and the minimum detection concentration was about 2 2 pM. Even after being placed at 37°C for 72 hours, the minimum detection concentration of 2 4 pM was still maintained. This result shows that the stability of the digoxin nanobody is significantly better than the commercially available digoxin monoclonal antibody.
实施例八:纳米抗体解救地高辛中毒Example 8: Nanobodies rescue digoxin poisoning
实验方法:Experimental methods:
将体重18-22g的雄性C57BL/6小鼠随机分为三组,纳米抗体组:尾静脉注射10mg/kg的纳米抗体VHH-A9;地高辛组:腹腔注射3.6mg/kg的地高辛形成地高辛中毒模型;地高辛-纳米抗体组:在腹腔注射3.6mg/kg的地高辛的同时通过尾静脉注射10mg/kg的纳米抗体VHH-A9。观察、统计各组受试动物的存活率。Male C57BL/6 mice weighing 18-22g were randomly divided into three groups: nanobody group: 10mg/kg nanobody VHH-A9 was injected into the tail vein; digoxin group: 3.6mg/kg digoxin was injected intraperitoneally to form a digoxin poisoning model; digoxin-nanobody group: 10mg/kg nanobody VHH-A9 was injected into the tail vein at the same time as 3.6mg/kg digoxin was injected intraperitoneally. The survival rate of the test animals in each group was observed and counted.
实验结果:Experimental results:
如表5所示,腹腔注射地高辛(3.6mg/kg)导致约半数小鼠死亡,在腹腔注射地高辛同时尾静脉注射的纳米抗体(10mg/kg)显著降低受试小鼠的死亡率(P<0.01)。单独注射纳米抗体对小鼠的存活无显著的影响。结果表明,本发明的纳米抗体能降低地高辛导致的毒性,增加小鼠的存活率,解救地高辛中毒。As shown in Table 5, intraperitoneal injection of digoxin (3.6 mg/kg) caused the death of about half of the mice. The nanoantibody (10 mg/kg) injected into the tail vein at the same time as the intraperitoneal injection of digoxin significantly reduced the mortality rate of the test mice (P < 0.01). The injection of the nanoantibody alone had no significant effect on the survival of the mice. The results show that the nanoantibody of the present invention can reduce the toxicity caused by digoxin, increase the survival rate of mice, and rescue digoxin poisoning.
表4动物死亡率表Table 4 Animal mortality rate
**P<0.01;具有统计学意义。 ** P<0.01; statistically significant.
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Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102056945A (en) * | 2008-04-07 | 2011-05-11 | 埃博灵克斯股份有限公司 | Amino acid sequences directed against the Notch pathways and uses thereof |
| CN103638036A (en) * | 2013-11-22 | 2014-03-19 | 南京大学 | Application of cardenolide compound in preparation of drugs treating sepsis immunoparalysis |
| CN109843867A (en) * | 2016-10-13 | 2019-06-04 | 日内瓦大学 | Noval chemical compound and its purposes for the target molecule in test sample |
| US20230012681A1 (en) * | 2018-10-25 | 2023-01-19 | Pharma Mar, S.A. | Antibody drug conjugates comprising ecteinascidin derivatives |
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Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102056945A (en) * | 2008-04-07 | 2011-05-11 | 埃博灵克斯股份有限公司 | Amino acid sequences directed against the Notch pathways and uses thereof |
| CN103638036A (en) * | 2013-11-22 | 2014-03-19 | 南京大学 | Application of cardenolide compound in preparation of drugs treating sepsis immunoparalysis |
| CN109843867A (en) * | 2016-10-13 | 2019-06-04 | 日内瓦大学 | Noval chemical compound and its purposes for the target molecule in test sample |
| US20230012681A1 (en) * | 2018-10-25 | 2023-01-19 | Pharma Mar, S.A. | Antibody drug conjugates comprising ecteinascidin derivatives |
Non-Patent Citations (2)
| Title |
|---|
| B. S. H. CHAN等: "Digoxin-specific antibody fragments in the treatment of digoxin toxicity", CLINICAL TOXICOLOGY, vol. 52, no. 8, 4 August 2014 (2014-08-04), pages 824 - 836 * |
| 周家军等: "地高辛血清药物浓度影响因素及检测方法", 临床药物治疗杂志, vol. 18, no. 10, 15 October 2020 (2020-10-15), pages 72 - 75 * |
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