CN110473202B - Time sequence invariant feature extraction method for high-order dynamic function connection network - Google Patents
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Abstract
本发明公开了一种高阶动态功能连接网络的时序不变特征提取方法,主要步骤为:(1)对于给定的滑动窗窗宽和步长,将整个磁共振序列分割为多个子序列;(2)计算每个子序列内的各个脑区之间相关性,得到动态功能连接网络,进而计算任意两个脑区的动态功能连接序列的中心矩特征;(3)对于动态功能连接网络的每一个子序列,将每个脑区与其他脑区的连接序列视为一个一维随机序列,计算任意一对脑区的相关性,进而构建了一个高阶动态功能连接网络并获取它的中心矩特征。本发明利用中心矩特征作为动态功能连接网络及高阶动态功能连接网络的时序不变特征,能够捕获脑功能连接的深层次关联关系,为后续的医学图像处理提供了稳定特征。
The invention discloses a time-series invariant feature extraction method of a high-order dynamic functional connection network. The main steps are: (1) for a given sliding window width and step size, the entire magnetic resonance sequence is divided into multiple subsequences; (2) Calculate the correlation between each brain region in each subsequence to obtain the dynamic functional connectivity network, and then calculate the central moment characteristics of the dynamic functional connectivity sequence of any two brain regions; (3) for each dynamic functional connectivity network A subsequence that treats the connection sequence between each brain region and other brain regions as a one-dimensional random sequence, calculates the correlation of any pair of brain regions, and then constructs a high-order dynamic functional connection network and obtains its central moment feature. The present invention uses the central moment feature as the time-series invariant feature of the dynamic functional connectivity network and the high-order dynamic functional connectivity network, which can capture the deep-level correlation of brain functional connectivity and provide stable features for subsequent medical image processing.
Description
◆ 技术领域◆ Technical field
本发明涉及神经影像和机器学习的技术领域,具体涉及一种高阶动态功能网络的时序不变特征提取方法。The present invention relates to the technical field of neuroimaging and machine learning, and in particular to a method for extracting time-invariant features of a high-order dynamic functional network.
◆ 背景技术◆ Background technology
静息态功能磁共振图像(rs-FMRI,resting-state functional magneticresonance imaging)是在被试者避免系统性思维活动环境下,基于脑神经活动所引起的血氧变化而产生的磁振造影技术,是人类探知大脑活动规律的一种十分有效的神经影像方式。由于rs-FMRI具有无创性和无辐射损害性以及较高的时空分辨率,目前已在认知科学、神经科学、药理学和精神疾病等领域的应用十分广泛。Resting-state functional magnetic resonance imaging (rs-FMRI) is a magnetic resonance imaging technique based on the changes in blood oxygen caused by brain nerve activity in an environment where the subject avoids systematic thinking activities. It is a very effective neuroimaging method for humans to explore the laws of brain activity. Because rs-FMRI is non-invasive, non-radiation-damaging, and has a high temporal and spatial resolution, it has been widely used in cognitive science, neuroscience, pharmacology, and mental illness.
为了有效提取和利用rs-FMRI所包含的信息,需要采用一定的策略和方法对rs-FMRI数据进行处理,用以捕获rs-FMRI所蕴含的重要特征。其中基于滑动窗策略的动态功能连接网络(D-FCN,dynamic functional connectivity network)是捕获rs-FMRI细微动态变化特征的重要方式。对于一个个体,令表示第i个脑功能区的平均rs-FMRI时间序列,其中M表示整个扫描时间段内的采样数目,N表示大脑皮层的功能区数目。则D-FNC构建的基本步骤可表述为:In order to effectively extract and utilize the information contained in rs-FMRI, it is necessary to adopt certain strategies and methods to process rs-FMRI data to capture the important features contained in rs-FMRI. Among them, the dynamic functional connectivity network (D-FCN) based on the sliding window strategy is an important way to capture the subtle dynamic changes of rs-FMRI. For an individual, let represents the average rs-FMRI time series of the i -th brain functional area, where M represents the number of samples in the entire scanning time period, and N represents the number of functional areas in the cerebral cortex. The basic steps of D-FNC construction can be expressed as:
1)将整个扫描时间段内的rs-FMRI划分为多个rs-FMRI子序列。1) The rs-FMRI in the entire scanning time period is divided into multiple rs-FMRI subsequences.
利用滑动窗技术,将rs-FMRI时间序列分割为K个子序列,即:Using sliding window technology, rs-FMRI time series Divide into K subsequences, namely:
(1) (1)
其中表示rs-FMRI的子序列数目,T表示滑动窗宽,S表示滑动步长。in represents the number of subsequences of rs-FMRI, T represents the sliding window width, and S represents the sliding step size.
)D-FCN构建。)D-FCN construction.
对第个子窗口的rs-FMRI序列,计算序列之间相关性。即For rs-FMRI sequences of sub-windows, and calculate the correlation between sequences.
(2) (2)
显然是一个相关性矩阵,描述了任意一对脑区在一个短时间内的相关性。基于公式(1),我们可以得到个相关性序列,即Apparently is a correlation matrix describing any pair of brain regions Correlation over a short period of time. Based on formula (1), we can get A correlation sequence, that is
(3) (3)
其中,描述了任意一对脑区随着扫描时间而发生的变化。in, Describes changes in any pair of brain regions over scanning time.
目前,已有众多证据表明:基于滑动窗策略所构建的D-FCN,能够较好反应脑区之间连接的动态变化,而且这种变化可以揭示不同个体之间脑组织以及脑功能之间的差异性,因此在认知科学、神经科学、药理学和精神疾病等领域存在巨大的应用前景。At present, there is a lot of evidence showing that D-FCN constructed based on the sliding window strategy can better reflect the dynamic changes in connections between brain regions, and this change can reveal the differences in brain tissue and brain function between different individuals. Therefore, it has great application prospects in the fields of cognitive science, neuroscience, pharmacology and mental illness.
然而,尽管D-FCN为我们了解大脑活动提供了一个新渠道,但是D-FCN存在以下几个明显的缺点:(1)D-FCN对时间顺序特别敏感。即在静息态环境下,不同个体在整个磁共振扫描时间区间的脑神经活动规律,并不具备时间上的一致性。也就是说,不同个体在同一个磁共振扫描时间段内的脑区之间的相关性并不一致。因此,对不同个体而言,沿着扫描时间的动态功能连接子序列(即D-FCN)存在时间上的错匹配。(2)D-FCN只是反映了任意两个脑区之间的动态连接特性,无法反映多个脑区之间的关联关系。所以,采用何种方法获取D-FCN时序不变特征和多个脑区之间的关联关系,仍是当今有待解决的难题。However, although D-FCN provides a new channel for us to understand brain activity, it has the following obvious shortcomings: (1) D-FCN is particularly sensitive to time sequence. That is, in a resting state, the brain neural activity patterns of different individuals in the entire MRI scanning time interval do not have temporal consistency. In other words, the correlation between brain regions of different individuals in the same MRI scanning time period is not consistent. Therefore, for different individuals, the dynamic functional connection subsequence (i.e., D-FCN) along the scanning time has temporal mismatches. (2) D-FCN only reflects the dynamic connection characteristics between any two brain regions, and cannot reflect the correlation between multiple brain regions. Therefore, what method to use to obtain the temporal invariant features of D-FCN and the correlation between multiple brain regions is still a difficult problem to be solved today.
◆ 发明内容◆ Summary of the invention
为了解决上述问题,本发明提供一种获取D-FCN以及高阶D-FCN时序不变特征的提取方法。该特征反映了功能连接的高阶信息,可以捕获多个脑区之间的功能连接关系,可用于后续的脑损伤检测、康复效果观察等方面。In order to solve the above problems, the present invention provides a method for extracting D-FCN and high-order D-FCN time-invariant features. This feature reflects the high-order information of functional connectivity, can capture the functional connectivity relationship between multiple brain regions, and can be used for subsequent brain injury detection, rehabilitation effect observation, etc.
◆ 本发明的具体步骤如下:◆ The specific steps of the present invention are as follows:
第1步)初始参数设定。设定滑动窗宽度T, 滑动步长S。Step 1) Initial parameter setting. Set the sliding window width T and sliding step size S.
第2步)功能磁共振子序列获取。利用给定的滑动窗和步长,沿着扫描时间轴,将整个磁共振序列分割为多个子序列。Step 2) Acquisition of functional magnetic resonance subsequences: Using the given sliding window and step size, the entire magnetic resonance sequence is divided into multiple subsequences along the scanning time axis.
第3步)获取D-FCN。计算每个子窗口内各个脑区之间相关性,进而得到D-FCN。Step 3) Obtain D-FCN. Calculate the correlation between each brain region in each sub-window to obtain D-FCN.
第4步)获取D-FCN的中心矩特征。计算任意两个脑区的动态功能连接序列的中心矩特征。由于一个随机序列的中心矩具有时序不变性,因此D-FCN的中心矩特征可以作为D-FCN的时序不变特征。Step 4) Obtain the central moment feature of D-FCN. Calculate the central moment feature of the dynamic functional connection sequence of any two brain regions. Since the central moment of a random sequence is time-invariant, the central moment feature of D-FCN can be used as the time-invariant feature of D-FCN.
第5步)获取高阶动态功能连接网络(Ho-D-FCN, high-order dynamicfunctional connectivity network)。即对于D-FCN的每一个子序列,将每个脑区与其他脑区的连接序列视为一个一维随机序列,计算任意一对脑区的相关性,即“相关性的相关性”,它反映了多个脑区之间的关联关系,进而构建了一个高阶动态功能连接网络,即Ho-D-FCN。Step 5) Obtain a high-order dynamic functional connectivity network (Ho-D-FCN). That is, for each subsequence of D-FCN, the connection sequence between each brain region and other brain regions is regarded as a one-dimensional random sequence, and the correlation between any pair of brain regions is calculated, that is, the "correlation of correlation", which reflects the correlation between multiple brain regions, and then a high-order dynamic functional connectivity network, namely Ho-D-FCN, is constructed.
第6步)获取Ho-D-FCN的中心矩特征。类似步骤4,获取Ho-D-FCN的高阶中心矩特征,作为D-FCN的高阶时序不变特征。Step 6) Obtain the central moment feature of Ho-D-FCN. Similar to step 4, obtain the high-order central moment feature of Ho-D-FCN as the high-order time-series invariant feature of D-FCN.
◆ 本发明的有益效果:◆ Beneficial effects of the present invention:
1)D-FCN的中心矩特征具有时序不变性,能够有效克服D-FCN的时序敏感性问题。1) The central moment feature of D-FCN is time-invariant and can effectively overcome the time-sensitivity problem of D-FCN.
2)Ho-D-FCN的中心矩特征保持时序不变性的同时,能够反映多个脑区的关联关系,为深度探索脑神经活动规律提供了更丰富的信息。2) The central moment feature of Ho-D-FCN can maintain temporal invariance while reflecting the correlation between multiple brain regions, providing richer information for in-depth exploration of the laws of brain neural activity.
◆ 附图说明◆ Description of the attached figure
图1是发明的流程示意图FIG. 1 is a schematic diagram of the process of the invention
◆ 具体实施方式◆ Specific implementation method
下面结合附图(图1)与实施例对本发明作进一步说明。如图1所示,包括以下步骤:The present invention is further described below in conjunction with the accompanying drawings (Fig. 1) and embodiments. As shown in Fig. 1, the process comprises the following steps:
第1步)初始参数设定。设定滑动窗窗宽T, 滑动步长S。Step 1) Initial parameter setting. Set the sliding window width T and sliding step length S.
第2步)功能磁共振子序列获取。令表示某个个体的第i个脑功能区的平均rs-FMRI时间序列,其中M表示整个扫描时间段内的采样数目,N表示大脑皮层的功能区数目。利用滑动窗技术,将整个扫描时间段内的rs-FMRI时间序列分割为K个子序列,即Step 2) Acquire functional magnetic resonance subsequences. represents the average rs-FMRI time series of the i- th brain functional area of an individual, where M represents the number of samples in the entire scanning time period, and N represents the number of functional areas of the cerebral cortex. Using the sliding window technique, the rs-FMRI time series in the entire scanning time period are Divide into K subsequences, that is,
(1) (1)
其中表示rs-FMRI的子序列数目。in Indicates the number of subsequences of rs-FMRI.
第3步)D-FCN(动态功能连接网络)的构建。对第个子窗口的rs-FMRI序列,采用皮尔逊相关系数计算序列之间相关性。即Step 3) Construction of D-FCN (Dynamic Functional Connection Network). The Pearson correlation coefficient is used to calculate the correlation between the rs-FMRI sequences of the sub-windows.
(2) (2)
显然是一个相关性矩阵,描述了任意一对脑区在一个短时间内的相关性。基于公式(1),我们可以得到个相关性序列,即Apparently is a correlation matrix describing any pair of brain regions Correlation over a short period of time. Based on formula (1), we can get A correlation sequence, that is
(3) (3)
其中,描述了任意一对脑区之间相关性随着扫描时间而发生的变化。in, Describes how the correlation between any pair of brain regions changes over scanning time.
第4步)获取D-FCN(动态功能连接网络)的中心矩特征。由公式(3),我们可以得到一个功能连接序列,即Step 4) Get the central moment feature of D-FCN (Dynamic Functional Connection Network). From formula (3), we can get a functional connection sequence ,Right now
= [] (), (4) = [ ] ( ), (4)
其中反映了第i个脑区与第j 个脑区之间沿着时间轴的动态连接关系。事实上,不同个体相应脑区之间的动态连接关系不存在时间一致性,即不同个体的同一时刻相应脑区的动态连接关系存在很大差异性。为此,为了获取动态连接序列的时序不变特征,我们求取每个动态序列的中心矩特征,即in It reflects the dynamic connection relationship between the i -th brain area and the j -th brain area along the time axis. In fact, the dynamic connection relationship between the corresponding brain areas of different individuals There is no temporal consistency, that is, the dynamic connection relationship of the corresponding brain regions of different individuals at the same time is very different. Therefore, in order to obtain the temporal invariant characteristics of the dynamic connection sequence, we calculate the central moment feature of each dynamic sequence, that is,
(), (8) ( ), (8)
其中表示中心矩阶次,表示= []的均值。显然,由于一维随机信号序列的中心矩具有时序不变心,所以()可以作为动态功能连接序列= [] ()的时序不变特征,用于后续的影像分类、辅助诊断等。in represents the central moment order, express = [ ]. Obviously, since the central moment of a one-dimensional random signal sequence has a time-series invariant center, ( ) can be used as a dynamic functional connection sequence = [ ] ( )’s time-series invariant features are used for subsequent image classification, auxiliary diagnosis, etc.
第5步)Ho-D-FCN(高阶动态功能连接网络)的构建。考虑到(见公式(4))仅仅反映了两个脑区之间的动态连接关系,并不能捕获多个脑区之间的动态连接关系。为了获取多个脑区之间的动态连接关系,我们按照如下方式定义一个高阶动态网络Ho-D-FCN。Step 5) Construction of Ho-D-FCN (Higher-order Dynamic Functional Connection Network). Considering (See formula (4)) only reflects the dynamic connection relationship between two brain regions, and cannot capture the dynamic connection relationship between multiple brain regions. In order to obtain the dynamic connection relationship between multiple brain regions, we define a high-order dynamic network Ho-D-FCN as follows.
,),(9) , ), (9)
其中, 它表示了第i个脑区在第k个时间段内与其他脑区之间的相关性,所以,表示了第i个脑区与第j个脑区之间“相关性的相关性”,是多个脑区之间相关性的一种体现,我们称之为“高阶相关性”。基于公式(9),我们可以得到个相关性序列,即in , which represents the correlation between the i- th brain region and other brain regions in the k- th time period, so, It represents the "correlation of correlation" between the i -th brain region and the j-th brain region, which is a manifestation of the correlation between multiple brain regions. We call it "high-order correlation". Based on formula (9), we can get A correlation sequence, that is
(10) (10)
显然,描述了多个脑区之间相关性随着扫描时间而发生的变化。Obviously, Describes changes in correlations between multiple brain regions over scanning time.
第6步)获取Ho-D-FCN的中心矩特征。依据公式(9), 我们可以得到一个高阶功能连接序列,即Step 6) Obtain the central moment feature of Ho-D-FCN. According to formula (9), we can get a high-order functional connection sequence ,Right now
= [] (), (11) = [ ] ( ), (11)
其中反映了第i个脑区(与其它脑区)的相关性与第j 个脑区(与其他脑区)的相关性之间沿着时间轴的动态连接关系, 即“相关性的相关性”的动态变化关系。类似第4步,为了获取这种动态连接序列的时序不变特征,我们求取每个动态序列的中心矩特征,即in It reflects the dynamic connection relationship between the correlation of the i -th brain region (with other brain regions) and the correlation of the j -th brain region (with other brain regions) along the time axis, that is, the dynamic change relationship of "correlation of correlation". Similar to step 4, in order to obtain the time-invariant characteristics of this dynamic connection sequence, we calculate the central moment feature of each dynamic sequence, that is,
(), (12) ( ), (12)
其中表示中心矩阶次,表示= []的均值。显然,由于一维随机信号序列的中心矩具有时序不变心,所以()可以作为高阶动态功能连接序列= [] 的时序不变特征,用于后续的影像分类、辅助诊断等。in represents the central moment order, express = [ ]. Obviously, since the central moment of a one-dimensional random signal sequence has a time-series invariant center, ( ) can be used as a high-order dynamic functional connection sequence = [ ]’s time-invariant features are used for subsequent image classification, auxiliary diagnosis, etc.
由公式(8)和公式(12),我们分别获取了D-FCN(动态功能连接网络)与Ho-D-FCN(高阶动态功能连接网络)的时序不变特征()和(),并将其用于后续的脑影像处理,得到较好的结果。From formula (8) and formula (12), we obtain the time-invariant features of D-FCN (dynamic functional connection network) and Ho-D-FCN (high-order dynamic functional connection network) respectively. ( )and ( ) and used it for subsequent brain image processing to obtain better results.
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