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WO1992001001A1 - Production of outer membrane (om) proteins in gram-positive bacteria and recovery of protective epitopes - Google Patents

Production of outer membrane (om) proteins in gram-positive bacteria and recovery of protective epitopes Download PDF

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Publication number
WO1992001001A1
WO1992001001A1 PCT/FI1991/000212 FI9100212W WO9201001A1 WO 1992001001 A1 WO1992001001 A1 WO 1992001001A1 FI 9100212 W FI9100212 W FI 9100212W WO 9201001 A1 WO9201001 A1 WO 9201001A1
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Prior art keywords
outer membrane
membrane protein
protein
cloned
gram
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PCT/FI1991/000212
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French (fr)
Inventor
Matti Sarvas
Sarah Butcher
Marjatta Nurminen-Kalliokoski
Kate Runeberg-Nyman
Susanna Muttilainen
Eva WAHLSTRÖM
Ilona IDÄNPÄÄN-HEIKKILÄ
Ritvaleena Puohiniemi
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The Finnish National Public Health Institute
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Priority to AU81873/91A priority Critical patent/AU668075B2/en
Priority to JP3511658A priority patent/JPH06511140A/en
Publication of WO1992001001A1 publication Critical patent/WO1992001001A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/24Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
    • C07K14/245Escherichia (G)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04Antibacterial agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/22Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Neisseriaceae (F)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • C12N15/75Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Bacillus
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies

Definitions

  • OMP outer membrane proteins
  • Tne conformation of the OMP's seems to depend on their association with LPS's and other specific factors in the environment. What these other factors are, and how they affect conformation, are not well understood.
  • epitopes on native proteins comprise about 15-25 amino acid residues, which are made up of two or three discontinuous surface loops. See for example. Layer et al, Cell 61:553-556 (1990). Tne protective epitopes contained in the outer membrane proteins are exposed on the cell surface of the bacterium, where they are capable of inducing antibodies that can protect an animal against infection by that strain of bacteria. Energetic calculations suggest that a smaller subset of 5-6 amino acid residues of an epitope contributes most of the binding energy to the antibodies, with the surrounding residues merely aiding in
  • the epitope regions are loops connecting so-called beta-regions which protrude out of the membrane. These loops are hydrophiiic and may be locally water soluble, even though this is not true of the whole OMP.
  • Purified outer membrane proteins could be used in medicine as vaccines to prevent diseases caused by pathogenic gram-negative bacteria or as reagents to diagnose such diseases by immunological methods.
  • Neisseria meningitidis bacteria meningococci
  • purulent meningitis Pieris-associated meningitis
  • capsular polysaccharide vaccines were shown to be efficacious against two meningococcal serogroups, A and C (World Health Organization Study Group. Technical Report Series No. 588. World Health Organization. Geneva, 1976).
  • MenB The capsule of the third major serogroup, B (hereinafter MenB) proved, however, to be structurally closely similar to the saccharide part of glycoprot ⁇ ins in some human tissues (Finne, J., Leinonen, M., and Gurkelä, P.H. Lancet ii:355-357 (1983)). Tne resulting strons immunolo ⁇ ical cross-reactivitv mav exoiain whv attemots to produce a capsular polysaccharide vaccine for MenB have failed.
  • Alteanative candidates for a MenB vaccine have been sought.
  • the outer membrane of Neisseria meningitidis bacteria, as the surface structure of the bacteria in immediate contact with the environment, is one such candidate. Protection afforded by monoclonal antibodies directed to different OM components has been studied in an infant rat model
  • OM complex vaccines consisting of semi-purified OM components, have been prepared and tested in several field trials (Frasch, C.E.
  • Neisseria meningitidis and other pathogens such as Neisseria gonorrhoeae, Haemophilus infiuenzae, Yersinia sp. , and Brucella sp., their preparation and purification from gram-negative bacteria is difficult with conventional biochemical methods.
  • a special problem is the tight association of the OMP's with lipopolysaccharide (Hitchcock, P.J., and Morrison, D.C. in E.T. Rietschel (ed.) Handbook of Endotoxin, vol. I. Chemistry of Endotoxin, Elsevier Science Publishing. Inc. New York, 1984.), which is toxic.
  • the problem of removing toxic LPS has so far not been solved in a satisfactory manner, even using harsh methods.
  • proteins When proteins are produced using the methods of genetic engineering, it is often a goal to produce the recombinant proteins in large amounts. Sometimes when large amounts of recombinant proteins are produced in bacteria, the proteins form insoluble aggregates. These insoluble aggregates are referred to as inclusion bodies. In inclusion bodies the proteins are in an unnatural state devoid of their authentic configuration and epitopes. Before restoration of the biological activity (e.g., enzymatic or receptor activities, or protective epitopes) the recombinant proteins must be returned to their native conformations, i.e., need to be correctly folded.
  • biological activity e.g., enzymatic or receptor activities, or protective epitopes
  • Chaotropic agents and detergents can be used to solubilize some proteins and return them to their native conformations. (Chaotropic agents prevent the random coils among hydrophilic regions , which are characteristic of denatured lipophilic proteins in aqueous solutions, from occurring.) Unfortunately, the proteins produced in bacteria as inclusion bodies are very resistant to many chaotropic agents and detergents (see generally, Methods of Enzymology, 1990) and are soluble, if at all, only in high concentrations of urea or guanidine hydrochloride, or SDS. This is true even though the native proteins were water soluble.
  • an enzyme protein can be regained after removal of the chaotropic agent, e.g., active prourokinase is formed from inactive prourokinase inclusion bodies by solubilization with 6 M guanidine hydrochloride and 2-mercaptoethanol and subsequent refolding of the protein for 24 h at 15 o C in a buffer containing 2 M urea (Orsini, G. et al, Eur. J. Biochem. 195:691-697 (1991)).
  • Some recombinant proteins are soluble in sarkosyl (Puohiniemi, R., M. Karvonen, J. Vuopio-Varkila, A. Muotiala, I.M. Helander and M. Sarvas. Inf. Imm. 58:1691-1696 (1990);
  • the outer membrane proteins of gram-negative bacteria are intimately bound to lipopolysaccharide (LPS) and perhaps other membrane components; their proper conformation is dependent on this association with such components of the membrane environment.
  • LPS lipopolysaccharide
  • these stabilizing components must be replaced by other components that mimic their function, so as to ensure the stability of the OMP in its native beta-barrel conformation.
  • the beta structure is the well-ordered part of the OMP that is complexed with LPS.
  • regulation and expression sequence it is meant to include within the scope of the instant invention the DNA sequence of a gene preceding the DNA sequence encoding a polypeptide; the DNA sequence is needed for the transcription and translation of the DNA sequence encoding that polypeptide. Such sequence typically includes the promoter and ribosomal binding site and possibly binding sites for regulatory proteins.
  • the “regulation and expression sequence” may be any biologically active fragment thereof.
  • the regulation and expression sequence may include also a DNA sequence encoding an N-terminal fragment of the polypeptide, if that fragment of the polypeptide is not a functional signal sequence for export.
  • outer membrane protein and by “mature outer membrane protein” it is meant an outer membrane protein, which is devoid of a signal peptide for export, or devoid of a functional signal peptide.
  • vector any autonomous element capable of replicating in a host independently of the host's chromosome, into which additional sequences of DNA may be incorporated.
  • vectors include, but are not limited to, bacterial plasmids and phages.
  • the regulation and expression sequence including the promoter, controls the initiation of expression of the polypeptide encoded by the structural gene; there may be a DNA sequence derived from the same gene as the promoter or any other DNA sequence between the promoter and the initiation of the polypeptide to enhance the expression of the polypeptide.
  • This DNA sequence may encode a peptide that remains fused to the polypeptide, but the said peptide must not be a functional signal for export.
  • Recombinamly produced when referring to the production of OMP, means that the OMP's of one species of bacteria, or DNA encoding for such protein, are expressed in the cells of a bacterium from another species. Recombinamly produced OMP will have been produced using the techniques of gene expression and genetic engineering. Recombinamly produced OMP's are cloned OMP's, and are to be
  • the invention provides a method for producing cloned outer membrane (OM) protein from pathogenic gram-negative bacteria.
  • the invention also provides a method for renaturing the cloned outer membrane protein thus produced so the cloned OM protein regains immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and can provide protection against infection by the pathogenic gram -negative bacteria.
  • DNA encoding outer membrane protein from gram-negative bacteria known to be pathogenic in humans and animals, is expressed in a gram-positive bacterial host.
  • the recombinant or cloned OM protein thus produced is then renatured so as to regain biologically or immunologically active epitopes which are capable of eliciting production of antibodies in animals and humans; the antibodies are bactericidal and protect the animals and humans from infection by the pathogenic gram-negative bacteria from which the gene encoding the cloned OMP's was derived.
  • a Bacillus or other suitable gram-positive bacterial host containing a recombinant DNA molecule comprising the regulation and expression sequence of a gene expressed well in the host is operationally linked to a DNA sequence encoding an outer membrane protein from a gram-negative bacteria known to be pathogenic to animals and humans.
  • the regulation and expression signal is typically an effective promoter and ribosomal binding site.
  • the DNA sequence encoding the outer membrane protein is devoid of functional signal sequence, as is the regulation and expression sequence.
  • the presence of signal sequences decreases the amount of recombinant outer membrane protein expressed in the gram-positive host.
  • the recombinant DNA molecule may be introduced into the Bacillus or other suitable gram-positive host by transforming the host with a vector that is capable of replicating in several copies in the host strain.
  • the recombinant DNA molecule may be integrated into the chromosome of the Bacillus or other host strain. Using the method, more than one hundred milligrams of product per liter of culture are obtained when ordinary laboratory media are used. The amount can be higher in high density cultures.
  • the product may be aggregated
  • the conditions for refolding the OM proteins are such that allow the OM proteins to take the same or partially the same conformation as they have in their natural environment, in the outer membrane. While such conditions can be achieved by using the same amphiphilic compounds present in OM, e.g., LPS, use of LPS is not preferred since LPS is toxic. Non-toxic derivatives of LPS can used. Other non-toxic lipids or their derivatives or analogs, may also be used, alone or in conjunction with detergents, variations in pH and/or temperature, the addition of chemicals, e.g., sugars and amino acids, as well as other conditions which may favor refolding of protective epitopes.
  • LPS amphiphilic compounds present in OM
  • Other non-toxic lipids or their derivatives or analogs may also be used, alone or in conjunction with detergents, variations in pH and/or temperature, the addition of chemicals, e.g., sugars and amino acids, as well as other conditions which may favor refolding of protective epitopes.
  • any of these methods and agents, or combinations of agents may be used as long as they permit (a) proper refolding of the epitopic loops and (b) their accessibility to the immune system, i.e., the epitopic loops must protrude into the primarily aqueous serum of an animal or human after injection and subsequent dilution.
  • the method of the invention is exemplified by the production of cloned and renatured class 1 outer membrane protein from Neisseria meningitidis, class 3 OM protein of Neisseria meningitidis and the OM protein OmpA of Escherichia coli, all in Bacillus subtilis.
  • the method can be used to produce other outer membrane proteins, including, but not limited to, other OM proteins of Neisseria meningitidis, and the OM proteins of Neisseria gonorrhoeae,
  • One objective of the invention is to use the method for the production of safe and effective vaccines. Another objective is to provide diagnostic antigens for the identification of infections caused by
  • FIG. 1 The sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGE, Coomassie Blue staining) of 12 transformant colonies tested (see Example 3). Lane 1, the molecular weight standard;
  • Lane 3 Mock preparation made similarly to the OmpA preparation in lane 2 from IH6418, a strain containing the secretion vector without any insert. Lanes 4-15, samples of separate transformant colonies.
  • the figures to the left show the position and size (kDa) of molecular weight markers. Symbol on the right indicate position of OmpA.
  • Oligonucleotides used to amplify the DNA coding for the class 1 proteins in a PCR reaction.
  • the oligonucleotide of Sec. ID 1 consists of 4 nucleotides (AACC), a HindIII site, and nucleotides 125-155 of Barlow, et al, Mol. Microbiol. 3:131-139 (1989) coding for the first 10 amino acids of the mature protein.
  • the oligonucleotide of Seq. ID 2 consists of 4 nucleotides (AACC), the reverse sequence of the following: a HindIII site (including part of the stop codon), stop codon and nucleotides 1246-1217 of Barlow, et al, Mol. Microbiol. 3:131-139 (1989). The sequences are included in the specification, just preceding the claims.
  • Sequence ID Number 3 (Seq. ID 3). DNA sequence of the pKTH250 insert; P1.7,16. Nucleotide 1 of the sequence shown, corresponds to nucleotide 125 of the sequence from Barlow et al, Mol. Microbiol. 3:131-139 (1989).
  • Suitable expression vectors may be used in the present invention, and are known to those of skill in the art of recombinant genetics.
  • a preferred vector is disclosed in PCT WO 90FI41, filed 2 Feb 1990 and published 23 Aug 1990 as WO 9009448: New Recombinant DNA Molecules for Producing Proteins and Peptides in Bacillus Strains.
  • the transfer vector may be any plasmid or phage capable of replicating in several copies in a Bacillus strain or other gram-positive bacterium.
  • a multitude of such vectors are available, the most representative of them being the plasmids isolated from Staphy lococcus, Bacillus or
  • Streptococcus or their derivatives.
  • the regulation and expression sequence is in most cases first ligated to the transfer vector to be used and is thereafter modified for example by the aid of DNA-linkers so that the genes to be expressed may be joined downstream from the regulation and expression sequence of the vector.
  • a DNA sequence encoding the OM protein (or epitopically functional portion(s) thereof) is ligated to a suitable vector.
  • the DNA sequences need not be identical to the DNA sequences encoding a particular OM protein as found in a particular natural gene. They may be derived from the sequences of natural genes of OM proteins, but modified in ways that may alter the properties of the resulting protein. Suitable sequences may also be made synthetically or semisynthetically.
  • the selected host may be transformed and cultivated by conventional methods.
  • the choice of suitable transformation systems and cultivation conditions depends on the selected host. Purification of OM Proteins Produced Intracellularly in Bacillus Host or in Other Gram-Positive Bacteria
  • the OM proteins produced with the method of the invention often form intracellular inclusion bodies.
  • the main advantage of producing inclusion bodies (or intracellular aggregates of overproduced protein) is that they are easy to purify (Marston and Hartley, Methods of Enzymology
  • the bacterial cells are disrupted by sonication, passage through French pressure cells, lysozyme-treated or by other suitable means.
  • the inclusion bodies can be pelleted with low speed centrifugation and usually further washed with a mild detergent.
  • the inclusion bodies are soluble only in chaotropic agents like urea or guanidine hydrochloride or strong detergents like SDS.
  • the proteins can be further purified with conventional purification methods.
  • OM protein produced in Bacillus is not present in inclusion bodies, modifications of the methods above may be applied.
  • the purification may also involve solubilization and differential extraction with various types of detergents, and chromatography and electrophoresis in the presence and absence of detergents.
  • compositions of the recombinant polypeptides produced by the method of the invention may be prepared.
  • the purified OM proteins or their fragments may be used alone to prepare a pharmaceutically-acceptable dosage form and they may be mixed together in any combination.
  • the recovery of the native epitopes may involve addition of solubihzation and/or denaturing agents such as urea, guanidine hydrochloride and SDS, which may be later removed. It may also involve addition of compounds like
  • the preparation may be in a form of liposomes or in another form.
  • Immunoadjuvants such as aluminium hydroxide and
  • pharmacologically-acceptable preservatives such as thiomersal may be added to the composition.
  • the D ⁇ A fragment coding for the mature protein was acquired as follows: using the published nucleotide sequence of meningococcal class 1, P1.7,16 protein (Barlow et al, Mol Microbiol 3:131-139 (1989)) two
  • oligonucleotides (primer 1 and primer 2; primer 1 is shown herein as Seq. ID 1; primer 2 is Seq. ID 2) were synthesized and used to amplify the D ⁇ A coding for the mature class 1 protein in a polymerase chain reaction (PCR) with chromosomal meningococcal D ⁇ A .
  • the meningococcal D ⁇ A was isolated from strain IH5341 (P1.7,16) grown on protease-peptone plates containing 15% agarose in lieu of agar. After treatment with a zwitterionic detergent in citrate buffer (Domenico et al, J Microbial Methods 9:211-19 (1989)) to remove e.g., capsule, the D ⁇ A was isolated.
  • the PCR reaction was performed using a GeneAmpTM kit using the methods described by the manufacturer (Perkin Elmer Cetus).
  • the amplified D ⁇ A fragments were of two sizes when separated by agarose gel electrophoresis. The bigger fragment seemed to be the expected size for class 1, i.e., about 1100 bp whereas the other fragment was smaller, about 900 bp.
  • the amplified D ⁇ A mixture was purified by phenol extraction, ethanol precipitated, resuspended in TE (10 mM Tris-HCl pH8, 1 mM EDTA) and digested with the restriction enzyme HindIII.
  • the plasmid vector pUC18 was digested with the restriction enzyme HindIII.
  • the linearized vector D ⁇ A was ligated with the
  • HindIII-digested amplified D ⁇ A The ligation mixture was used to transform competent Escherichia coli K12 TGI cells which were grown, after
  • Plasmid pKTH250 (pUC18 containing DNA coding for the cloned class 1 protein P1.7,16) was digested with HindIII to release the cloned class 1 gene. Also plasmid pKTH2S9 was digested with HindIII to release the extra adapter copy and to linearize the vector (see Fig. 1). The two HindIII digested plasmids were ligated and the ligation mixture was used to transform IH6140. Cells that had received at least pKTH2S9 were selected on the basis of kanamycin resistance.
  • the size of plasmids present in the colonies which grew on Luria plates containing kanamycin was checked by cell lysis and running samples in an agarose gel by standard methods. Colonies which contained plasmids of the expected size were analyzed for class 1 protein expression by sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAG ⁇ ) and SDS-PAG ⁇ followed by immunoblotting (Western blot). One strain IH6627 containing plasmid pKTH290 which expressed the class 1 protein was further analyzed. The cloning site was checked by Sanger dideoxy sequencing of pKTH290 to ensure that only one copy of the adapter was present. Screening for the Expression of Class 1 Proteins
  • class 1 P1.7,16 protein in Bacillus transformants was screened using SDS-PAGE in the following way: a loopful of bacteria grown on Luria agar plates was suspended in Laemmli sample buffer and after heating at 100 o C, a sample was applied to SDS-PAGE. The class 1 protein was visualized with Coomassie Blue staining (Fig. 3) and with immunostaining of the SDS-PAGE after blotting the proteins onto millipore filter (Western blot). Antisera KH 1110 prepared by immunization of a rabbit with an extract of MenB:15:P1.7,16 bacteria, was used in
  • the bacteria were grown either in liquid or on solid Luria medium containing 10 - 30 ⁇ g kanamycin per liter. When growing one liter of Luria broth about 10 g bacterial cells (wet weight) were obtained.
  • the bacteria were disrupted with lysozyme in the following way: one gram of bacteria grown on Luria agar plates containing kanamycin was suspended in 5 ml of 20 sucrose in buffer (25 mM TrisHCl, pH 8.0; 15 mMMgCl 2 containing 1 mg lysozyme/ml). After an incubation of 30 min at 37 ° C the protoplasts were collected by cemrifugation (10,000xg) and lysed by suspending them in 5 ml of 50 mM TrisHCl, pH 8,0. DNa se (1 mg/ml) was added and after five minutes inclusion bodies were collected by centrifugation 10,000xg for 10 min.
  • BacP1.7,16 protein isolated as inclusion bodies was called BacP1.7,16-IB.
  • the inclusion body fraction derived from 10 g of bacteria contained 300 mg protein, as measured by the Lowry method (Lowry, O.H. et al, J. Biol Chem. 193:265-275 (1951)).
  • the amount of BacP1.7,16 protein in this fraction was roughly estimated by visual inspection of the SDS-PAGE (Fig. 6) to be at least 120 mg. That means that more than 1/3 of the protein present in the inclusion bodies from
  • IH6627 is BacP1.7,16 protein. It can be calculated that BacP1.7,16 protein comprised at least 25 % of the total cellular protein of IH6627. It can also be calculated that there was more than one hundred mg of BacP1.7,16 protein per liter of culture.
  • the size of the BacP1.7,16 protein is roughly the same as that of the authentic protein of N. meningitidis in SDS-Page.
  • the plasmid pKTH 217 (described in Puohiniemi, R., M.
  • Karvonen, J. Vuopio-Varkila, A. Muotiala. I.M. Helander and M. Sarvas. Inf. Imm. 58:1691-1696 (1990)) contains a 2.5 Kb HindIII-BamHI fragment which encodes, starting at the HindIII terminus, the 8 to 325 amino acid residues of the OmpA protein of E. coli. The fragment is flanked at the HindIII terminus by a unique Clal-HindIII fragment. To construct the plasmid pKTH3125, this ClaI-HindIII fragment was replaced by the ClaI-HindIII fragment of the plasmid pKTH288 shown in Figure 1.
  • the latter fragment contains the promoter and truncated, nonfunctional signal sequence of ⁇ -amylase.
  • pKTH3125 they were fused to the DNA fragment encoding the OmpA protein.
  • the plasmids pKTH217 and 288 were digested with endonucleases Clal and HindIII, phenol extracted, ethanol precipitated and resuspended in water. Then 1.2 ⁇ g of digested pKTH217 was mixed with 2.5 ⁇ g of digested pKT ⁇ 288, treated with polynucleotide kinase and then ligated. All DNA manipulations were performed as described in Maniatis et al, (Maniatis, T., E. F. Fritsch, and J. Sambrook, Molecular Cloning. A
  • Competent cells of B. subtilis strain IH6140 were then transformed with the ligation mixture as described in Maniatis et al, and plated on Luria-plates containing 10 ⁇ g of kanamycin.
  • the expression of OmpA was tested as follows from 24 of more than 10 4 transformant colonies obtained. About half of the colony was mixed with 10 ⁇ l of SDS-PAGE sample buffer, heated to 100o C for 5 minutes and the sample was electrophoresed in SDS-PAGE (Laemmli, U. K. Nature, (London) 227:680-685 (1970)). As judged by the presence of a major band of the size of the mature OmpA protein (Fig. 4, lanes 4, 6-9, 13, 14), several colonies contained OmpA protein. This band also reacted with OmpA serum in immunoblotting. One of them was designated IH6649, and the plasmid in this strain pKTH3125.
  • IH6649 was grown overnight at 37 oC with shaking (250 rpm) in liquid culture in twofold-concentrated L-broth containing 10 mg of NaCl per liter, 10 ⁇ g of kanamycin per ml, and 30 ⁇ l of potato extract per ml (Kallio, P., M. Simonen, I. Palva, and M. Sarvas, J. Gen. Microbiol. 132:677-678 (1986)).
  • particulate material was then pelleted by centrifugation at 16,000xg, for 10 min. OmpA was not a major band in the supernatant, as analyzed with
  • subtilis IH6649 it forms aggregates or inclusion bodies that can be collected by centrifuging at 2,000-5,000xg.
  • the amount of OmpA in the 2,000xg pellet after washing and the 2.000xg supernatant after pelleting at 5,000xg and washing was estimated visually by comparing the intensity of the OmpA bands in SDS-PAGE-(Fig. 5, lanes 13 and 14) with the intensity of the molecular weight standard bands
  • the 43 kDa band contains 1.47 ⁇ g protein according to the manufacturer. Pharmacia).
  • the band in lane 13 was estimated to contain 1.5 ⁇ g of OmpA which makes the total amount 20 mg in the 2.000xg pellet.
  • the band in lane 14 was estimated to contain 0.8 ⁇ g of OmpA which makes the total amount 13 mg of OmpA in the 5,000xg pellet. The total yield of purified OmpA was thus about 60 mg/l of culture.
  • the recovery of protective epitopes was tested by immunizing groups of ten mice with 20 ⁇ g of BacP1.7,16 protein treated in various ways, given in two injections.
  • the immunizing injection was either subcutaneous or intraperitoneal (i.p.) with 0.1 ml of antigen diluted in PBS. The interval between the two doses was six weeks.
  • the first injection contained an adjuvant as indicated in Tables 1-4.
  • Ten days after the second injection the mice were bled, and the pooled sera analyzed.
  • EIA Enzyme Immunoassay
  • Anti-meningococcal antibodies were measured by EIA (Jalonen et al, J. Infect. 19:127-134 (1989)) using P1.7,16 meningococcal OM
  • the pups were randomized in groups of 6 pups each and injected i.p. with 100 ⁇ l of the immune sera in several dilutions (1:10, 1:100, 1:1000). One hour later a bacterial challenge 10 6 bacteria/ml) was injected i.p. in a volume of 100 ⁇ l. Tne development of bacteremia and meningitis was assessed by taking the appropriate samples 6 hours after the challenge to enumerate the viable bacteria by culture.
  • BacP1.7,16-IB protein is wholly soluble in SDS, guanidine hydrochloride and urea, but only partially in sarkosyl or cetylammonium bromide. The, protein precipitates if the solubilizing agent is removed. If the agent was guanidine hydrochloride, the precipitated protein is referred to as
  • BacP1.7,16-Gu is prepared from BacP1.7,16-IB in the following way: 5 mg of BacP1.7,16-IB protein was solubilized with 1 ml of
  • BacP1.7,16-Gu differs from BacP1.7,16-IB in being fairly soluble both in sarkosyl and cetylammonium bromide (CTB).
  • mice were immunized with BacP1.7,16-IB and -Gu preparations, and with preparations dissolved in the above mentioned detergents (1 mg of protein/1 ml of 2% detergent in 10 mM TrisHCl, pH 8.0 containing 5 mM EDTA) and diluted 1:5 in PBS.
  • Trisbuffer pH 8.0. Before immunization the sample was diluted 1:5 in PBS.
  • the immune sera were analyzed using the methods disclosed above. The result of the tests are shown in Table 3. All the sera contained antibodies against BacP1.7,16 protein and MenB:P1.7,16-membranes, were bactericidal and protective, which indicates that protective epitopes were obtained by this refolding method.
  • BacP1.7,16-IB or BacP1.7,16-Gu was suspended in 1 ml of 2% sarkosyl, and 0.1 ml of soybean lecithin (25 mg/ml of 2% sarkosyl) was added. Before immunization the samples were diluted 1:5 in 0.9% NaCl. In each case the mice received 0.2 ml of the antigen preparation.
  • the immune sera were analyzed using the methods disclosed above. The result of the tests are shown in Table 4.
  • BacOmpA-SS ⁇ BacOmpA 228 OmpA 228 -SS protein as a positive control.
  • the BacOmpA-SS ⁇ as shown in Table 5, was able to
  • BacOmpA 228 OmpA 228 -SS( + LPS) inhibited 83% of the phage binding, whereas 75 ⁇ g of BacOmpA-ss ⁇ ( +LPS) was needed to inhibit 70% of the phage binding. Hence binding by BacOmpA-ss ⁇ +LPS is less efficient. It can be said that the phage binding capacity of BacOmpA-SS ⁇ can be restored with LPS to a limited extent.
  • Plasmid pKTH290 in Bacillus subtilis in the parent strain IH6140 (the recombinant strain denoted as strain IH6627) was deposited on July 5, 1990 with the Deutsche Sammlung von Mikroorganismen (DSM),
  • the invention provides a method for producing cloned and renatured outer membrane (OM) protein from pathogenic gram-negative bacteria.
  • the renatured (OM) proteins produced by the method of the invention have immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and can provide protection against infection by pathogenic gram-negative bacteria.
  • These cloned renatured OM proteins are useful as diagnostic antigens for the identification of infections caused by gram-negative bacteria. They are also useful as vaccines or as components of vaccines.
  • MOLECULE TYPE DNA (genomic)
  • ORGANISM Neisseria meningitidis
  • MOLECULE TYPE DNA (genomic)
  • ORGANISM Neisseria meningitidis
  • MOLECULE TYPE DNA (genomic)
  • ORGANISM Neisseria meningitidis

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Abstract

The invention provides a method for producing cloned outer membrane (OM) protein from pathogenic gram-negative bacteria. The invention also provides a method for renaturing the cloned outer membrane protein thus produced so the cloned OM protein regains immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and can provide protection against infection by the pathogenic gram-negative bacteria. According to the method, DNA encoding outer membrane protein from gram-negative bacteria, known to be pathogenic in humans and animals, is expressed in a gram-positive bacterial host. The recombinant or cloned OM protein thus produced is then renatured so as to regain biologically or immunologically active epitopes which are capable of eliciting production of antibodies in animals and humans; the antibodies are bactericidal and protect the animals and humans from infection by the pathogenic gram-negative bacteria from which the gene encoding the cloned OMP's was derived. The method of the invention is exemplified in part by the production of cloned and renatured class 1 outer membrane protein from Neisseria meningitidis, class 3 OM protein of Neisseria meningitidis and the OM protein OmpA of Escherichia coli.

Description

PRODUCTION OF OUTER MEMBRANE (OM) PROTEINS IN GRAM-POSITIVE BACTERIA AND RECOVERY OF PROTECTIVE
EPITOPES Background of the Invention
The surface layer of gram-negative bacteria is composed of the outer membrane (OM). The bulk of OM is composed of so-called outer membrane proteins (OMP 's). OMP's are proteins of unique structure and properties. In their native state the OMP's of gram-negative bacteria are intimately bound to lipopolysaccharide (LPS) and other membrane
components. Tne conformation of the OMP's seems to depend on their association with LPS's and other specific factors in the environment. What these other factors are, and how they affect conformation, are not well understood.
X-ray diffraction studies indicate that the epitopes on native proteins comprise about 15-25 amino acid residues, which are made up of two or three discontinuous surface loops. See for example. Layer et al, Cell 61:553-556 (1990). Tne protective epitopes contained in the outer membrane proteins are exposed on the cell surface of the bacterium, where they are capable of inducing antibodies that can protect an animal against infection by that strain of bacteria. Energetic calculations suggest that a smaller subset of 5-6 amino acid residues of an epitope contributes most of the binding energy to the antibodies, with the surrounding residues merely aiding in
complementarity. The residues proposed to contribute most of the binding energy are not arranged in a linear sequence but are scattered over the epitope surface.
In the OMP s, the epitope regions are loops connecting so- called beta-regions which protrude out of the membrane. These loops are hydrophiiic and may be locally water soluble, even though this is not true of the whole OMP.
In denatured proteins, the conformation of the native
(protective) epitopes is usually lost, and antibodies formed against such denatured proteins are not protective against organisms from which such proteins were derived. It is, however, sometimes possible to regain the proper conformation of the proteins (and their epitopes). Much experimental work has been done using heat, acid, alkali, urea and guanidine hydrochloride denatured proteins to elucidate the process of refolding. Small proteins refold fast (e.g., 0.1 s) unless the cis-trans isomerization of proline residues or the formation of disulfide bonds is involved (Kim, P. and Baldwin, R. Ann. Rev. Biochem. 59:631-660 (1990)). The refolding of large proteins is naturally more complicated and very much more unpredictable. Proteins denatured with urea, guanidine hydrochloride or SDS easily loose the original cis-trans configuration of their proline residues. The original configuration is not easily regained by chemical methods, but can sometimes be catalyzed by pεptidyl-prolyl cis-trans isomerase enzymes (Fisher, G. and Bang, H. BA 828:39-42 (1985)). Restoration of the original disulfide bonds is also often very problematic (Ewbank, J. and Creighton, T. Nature 350:518-520 (1991)). This can be true even in cases where the native proteins are water soluble. (See generally, Richard, F. Scientific American 264:34-41 (January, 1991), for more about the protein folding problem.)
Purified outer membrane proteins could be used in medicine as vaccines to prevent diseases caused by pathogenic gram-negative bacteria or as reagents to diagnose such diseases by immunological methods. For example, Neisseria meningitidis bacteria (meningococci) cause a serious human infection, purulent meningitis (Peltoia, H. Rev. Infect. Dis. J. 5:71-91 (1983)), and the need for a vaccine to prevent meningococcal infections has existed for a long time. In the early 1970's, capsular polysaccharide vaccines were shown to be efficacious against two meningococcal serogroups, A and C (World Health Organization Study Group. Technical Report Series No. 588. World Health Organization. Geneva, 1976). The capsule of the third major serogroup, B (hereinafter MenB) proved, however, to be structurally closely similar to the saccharide part of glycoprotεins in some human tissues (Finne, J., Leinonen, M., and Mäkelä, P.H. Lancet ii:355-357 (1983)). Tne resulting strons immunoloεical cross-reactivitv mav exoiain whv attemots to produce a capsular polysaccharide vaccine for MenB have failed. Alteanative candidates for a MenB vaccine have been sought. The outer membrane of Neisseria meningitidis bacteria, as the surface structure of the bacteria in immediate contact with the environment, is one such candidate. Protection afforded by monoclonal antibodies directed to different OM components has been studied in an infant rat model
(Saukkonen, K. Microbial. Pathogenesis 4:203-212 (1988)). Antibodies directed to OM proteins were found protective. OM complex vaccines, consisting of semi-purified OM components, have been prepared and tested in several field trials (Frasch, C.E. Vaccine 5:3-4 (1987); Frøholm, L.O., Berdal, B.P., Bovre, K., Gaustad, P., Halstensen, A.I., Harboe, A., Harthug, S., Holten, E., Høiby, E.A., Lystad, A., Omland, T., Rosenqvist, E., Viko, G., Frasch, C.E., and Zollinger, W.D. Antonie van Leeuwenhoek (52:239-241 (1986)).
Although there is a need for OMP's such as OMP's from
Neisseria meningitidis, and other pathogens such as Neisseria gonorrhoeae, Haemophilus infiuenzae, Yersinia sp. , and Brucella sp., their preparation and purification from gram-negative bacteria is difficult with conventional biochemical methods. A special problem is the tight association of the OMP's with lipopolysaccharide (Hitchcock, P.J., and Morrison, D.C. in E.T. Rietschel (ed.) Handbook of Endotoxin, vol. I. Chemistry of Endotoxin, Elsevier Science Publishing. Inc. New York, 1984.), which is toxic. The problem of removing toxic LPS has so far not been solved in a satisfactory manner, even using harsh methods.
Both the production and purification of outer membrane proteins would be simplified and more effective if the OMP's were produced using the methods of genetic engineering. in gram-positive bacteria, which are devoid of lipopolysaccharide.
When proteins are produced using the methods of genetic engineering, it is often a goal to produce the recombinant proteins in large amounts. Sometimes when large amounts of recombinant proteins are produced in bacteria, the proteins form insoluble aggregates. These insoluble aggregates are referred to as inclusion bodies. In inclusion bodies the proteins are in an unnatural state devoid of their authentic configuration and epitopes. Before restoration of the biological activity (e.g., enzymatic or receptor activities, or protective epitopes) the recombinant proteins must be returned to their native conformations, i.e., need to be correctly folded.
Chaotropic agents and detergents can be used to solubilize some proteins and return them to their native conformations. (Chaotropic agents prevent the random coils among hydrophilic regions , which are characteristic of denatured lipophilic proteins in aqueous solutions, from occurring.) Unfortunately, the proteins produced in bacteria as inclusion bodies are very resistant to many chaotropic agents and detergents (see generally, Methods of Enzymology, 1990) and are soluble, if at all, only in high concentrations of urea or guanidine hydrochloride, or SDS. This is true even though the native proteins were water soluble.
In some cases the activity of an enzyme protein can be regained after removal of the chaotropic agent, e.g., active prourokinase is formed from inactive prourokinase inclusion bodies by solubilization with 6 M guanidine hydrochloride and 2-mercaptoethanol and subsequent refolding of the protein for 24 h at 15 º C in a buffer containing 2 M urea (Orsini, G. et al, Eur. J. Biochem. 195:691-697 (1991)). Some recombinant proteins are soluble in sarkosyl (Puohiniemi, R., M. Karvonen, J. Vuopio-Varkila, A. Muotiala, I.M. Helander and M. Sarvas. Inf. Imm. 58:1691-1696 (1990);
Frankel, S. et al, Proc. Natl. Acad. Sci SS:1192-1196 (1991)) and may regain their biological activity after removal of the detergent. Alkali may also induce native conformation of inclusion body proteins. Prochymotrypsin, solubilized in alkali-urea, folds in a proper native conformation and is subsequently able to autoprocess at an acidic pH (Marston, F. et al., FEMS Microbiol Letters 77:243-250 (1984)).
Less is known about the restoration of epitopes on denatured antigens than is known about the recovery of enzymatic activity in proteins that function as enzymes. What little knowledge there is has come from studies involving denatured native proteins. In one study outer membrane proteins, OmpA and OmpF of E. coli, were first purified by preparative SDS-gel electrophoresis (Dornmair, K. et al, J. Biol. Chem. 265:18907-18911 (1990)); in another these same OMP's were extracted with octyl-POE extraction (Eisele and Rosenbusch, 1990). Lipopolysaccharide (LPS) was not required to restore activity in either case. This is not in accordance with a study with E. coli spheroplasts (Sen, K. and Nikaido, H. J. Bacieriol.
173:926-928 (1991)), which showed that trimerization of OmpF protein takes place only in the presence of LPS.
While the knowledge of the renaturing of Escherichia coli OmpA and OmpF is a useful addition to the store of overall knowledge of renaturation of native proteins, it does not teach or predict what is required for renaturation of recombinamly produced OMP's that never were in tight association with native LPS's or other membrane and/or environmental components.
As indicated above, the outer membrane proteins of gram-negative bacteria are intimately bound to lipopolysaccharide (LPS) and perhaps other membrane components; their proper conformation is dependent on this association with such components of the membrane environment. Thus if LPS and possibly other membrane components are not present in preparations of isolated OMP's, these stabilizing components must be replaced by other components that mimic their function, so as to ensure the stability of the OMP in its native beta-barrel conformation. (The beta structure is the well-ordered part of the OMP that is complexed with LPS.)
Thus renaturation of OMP's is more complicated than merely solubilizing a recombinamly produced OMP and dialyzing out the chaotropic agent. To restore immunogenic function, i.e., to re-stabilize the membranebound regions that normally exist in a beta-configuration so as to expose the epitopic loops, it is necessary to replace the detergent or other agent with an the environment that mimics the natural one. While it may not be necessary to recover 100% of the native OMP conformation, this replacement must permit (a) proper refolding of the epitopic loops (which are a relatively small part of the total peptide). and (b) their accessibility to the immune system, i.e., the epitopic loops must protrude into the primarily aqueous environment after injection into an animal or human and subsequent dilution of the preparation.
It is an object of the present invention to provide a method for producing pure cloned outer membrane proteins, and to provide a method for their renaturation so as to regain biologically or immunologically active epitopes which are capable of eliciting the production of antibodies in animals that are (a) bactericidal and (b) protect the animals against infection by the original infectious agent.
It is a further object of the present invention to use these pure cloned and renatured OMP's as diagnostic antigens for the identification of infections caused by gram-negative bacteria.
It is a further object of the present invention to use these pure cloned and renatured OMP's in vaccines to protect animals and humans against infection by that strain of bacteria from which the gene encoding the cloned OMP's was derived.
Definitions
In the present specification and claims, reference is made to phrases and terms of art which are expressly defined for use herein as follows:
By "regulation and expression sequence" it is meant to include within the scope of the instant invention the DNA sequence of a gene preceding the DNA sequence encoding a polypeptide; the DNA sequence is needed for the transcription and translation of the DNA sequence encoding that polypeptide. Such sequence typically includes the promoter and ribosomal binding site and possibly binding sites for regulatory proteins. The "regulation and expression sequence" may be any biologically active fragment thereof. "The regulation and expression sequence" may include also a DNA sequence encoding an N-terminal fragment of the polypeptide, if that fragment of the polypeptide is not a functional signal sequence for export. By "outer membrane protein" and by "mature outer membrane protein" it is meant an outer membrane protein, which is devoid of a signal peptide for export, or devoid of a functional signal peptide.
By "vector" it is meant any autonomous element capable of replicating in a host independently of the host's chromosome, into which additional sequences of DNA may be incorporated. Such vectors include, but are not limited to, bacterial plasmids and phages.
By "operationally linked" it is meant that the regulation and expression sequence, including the promoter, controls the initiation of expression of the polypeptide encoded by the structural gene; there may be a DNA sequence derived from the same gene as the promoter or any other DNA sequence between the promoter and the initiation of the polypeptide to enhance the expression of the polypeptide. This DNA sequence may encode a peptide that remains fused to the polypeptide, but the said peptide must not be a functional signal for export.
As used herein, "recombinamly produced", when referring to the production of OMP, means that the OMP's of one species of bacteria, or DNA encoding for such protein, are expressed in the cells of a bacterium from another species. Recombinamly produced OMP will have been produced using the techniques of gene expression and genetic engineering. Recombinamly produced OMP's are cloned OMP's, and are to be
distinguished from OMP's that are extracted from the natural outer membranes of bacteria. Summary of the Invention
The invention provides a method for producing cloned outer membrane (OM) protein from pathogenic gram-negative bacteria. The invention also provides a method for renaturing the cloned outer membrane protein thus produced so the cloned OM protein regains immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and can provide protection against infection by the pathogenic gram -negative bacteria. According to the method, DNA encoding outer membrane protein from gram-negative bacteria, known to be pathogenic in humans and animals, is expressed in a gram-positive bacterial host. The recombinant or cloned OM protein thus produced is then renatured so as to regain biologically or immunologically active epitopes which are capable of eliciting production of antibodies in animals and humans; the antibodies are bactericidal and protect the animals and humans from infection by the pathogenic gram-negative bacteria from which the gene encoding the cloned OMP's was derived. According to the invention, a Bacillus or other suitable gram-positive bacterial host containing a recombinant DNA molecule comprising the regulation and expression sequence of a gene expressed well in the host is operationally linked to a DNA sequence encoding an outer membrane protein from a gram-negative bacteria known to be pathogenic to animals and humans. The regulation and expression signal is typically an effective promoter and ribosomal binding site.
In preferred form, the DNA sequence encoding the outer membrane protein is devoid of functional signal sequence, as is the regulation and expression sequence. The presence of signal sequences decreases the amount of recombinant outer membrane protein expressed in the gram-positive host.
According to the invention, the recombinant DNA molecule may be introduced into the Bacillus or other suitable gram-positive host by transforming the host with a vector that is capable of replicating in several copies in the host strain. Alternatively, the recombinant DNA molecule may be integrated into the chromosome of the Bacillus or other host strain. Using the method, more than one hundred milligrams of product per liter of culture are obtained when ordinary laboratory media are used. The amount can be higher in high density cultures. The product may be aggregated
intracellularly or found in the form of inclusion bodies.
According to the teaching of the invention, the conditions for refolding the OM proteins are such that allow the OM proteins to take the same or partially the same conformation as they have in their natural environment, in the outer membrane. While such conditions can be achieved by using the same amphiphilic compounds present in OM, e.g., LPS, use of LPS is not preferred since LPS is toxic. Non-toxic derivatives of LPS can used. Other non-toxic lipids or their derivatives or analogs, may also be used, alone or in conjunction with detergents, variations in pH and/or temperature, the addition of chemicals, e.g., sugars and amino acids, as well as other conditions which may favor refolding of protective epitopes. Any of these methods and agents, or combinations of agents, may be used as long as they permit (a) proper refolding of the epitopic loops and (b) their accessibility to the immune system, i.e., the epitopic loops must protrude into the primarily aqueous serum of an animal or human after injection and subsequent dilution.
The method of the invention is exemplified by the production of cloned and renatured class 1 outer membrane protein from Neisseria meningitidis, class 3 OM protein of Neisseria meningitidis and the OM protein OmpA of Escherichia coli, all in Bacillus subtilis. However, as those skilled in the art will appreciate, as a result of the teaching that it is possible to renature recombinant OM proteins, the method can be used to produce other outer membrane proteins, including, but not limited to, other OM proteins of Neisseria meningitidis, and the OM proteins of Neisseria gonorrhoeae,
Haemophilus infiuenzae, Yersinia sp. and Brucella sp.
One objective of the invention is to use the method for the production of safe and effective vaccines. Another objective is to provide diagnostic antigens for the identification of infections caused by
gram-negative bacteria.
Brief Description of Drawings and Nucleotide Sequences Figure 1. Construction of pKTH2SS and 2S9.
Figure 2. Construction of pKTH290.
Figure 3. The protein pattern of whole cells of Bacillus subtilis strains. Lane a, low molecular weight standards, lanes b, c, d and f control strains, lane e, IH6627. Figure 4. The protein pattern of inclusion bodies (=2,000xg pellets) derived from 0.5 mg wet weight of bacteria. Lane a, low molecular weight standards, lanes b, c, d and f, control strains, lane e, IH6627.
Figure 5. The sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGE, Coomassie Blue staining) of 12 transformant colonies tested (see Example 3). Lane 1, the molecular weight standard;
Lane 2, Sarkosyl solubilized Bac-OmpA produced from pKTH217
(Puohiniemi, R., M. Karvonen, J. Vuopio-Varkila, A. Muotiala, I.M.
Helander and M. Sarvas. Inf. Imm. 58:1691-1696 (1990); Lane 3, Mock preparation made similarly to the OmpA preparation in lane 2 from IH6418, a strain containing the secretion vector without any insert. Lanes 4-15, samples of separate transformant colonies. The figures to the left show the position and size (kDa) of molecular weight markers. Symbol on the right indicate position of OmpA.
Figure 6. SDS-PAGE and Coomassie Blue staining of different steps of particulate centrifugation of 500 ml of IH6649 (wet weight of cells 5-7 g). Lane 1, the molecular weight standards, 5 μl (suspended in 500 μl of sample buffer) was applied; Lane 5, the supernatant after 2,000xg
centrifugation, 2 μl of 20 ml was applied; Lane 6, the pellet after 2,000xg centrifugation (wet weight 1.88 g), the pellet was resuspended in 10 ml of 50 mM TrisHCl (pH S) and 0.3 μl was applied; Lane 13, the 2,000xg pellet after washing (wet weight 0.38 g), the final pellet was resuspended in 4 ml of the above buffer and 3 μl of a 1 to 10 dilution was applied; Lane 14, the pellet after 5,000xg centrifugation (wet weight 0.45 g), the pellet was resuspended in 5 ml of the above buffer and 3 μl of a 1 to 10 dilution was applied; Lane 11, the supernatant after 5,000xg centrifugation, 2 μl of the 20 ml supernatant was applied. The figures to the left show the position and size (kDa) of molecular weight markers. Symbols on the right indicate position of OmpA.
Sequence ID Numbers 1 and 2 (Seq. ID 1 and Seq. ID 2).
Oligonucleotides used to amplify the DNA coding for the class 1 proteins in a PCR reaction. The oligonucleotide of Sec. ID 1 consists of 4 nucleotides (AACC), a HindIII site, and nucleotides 125-155 of Barlow, et al, Mol. Microbiol. 3:131-139 (1989) coding for the first 10 amino acids of the mature protein. The oligonucleotide of Seq. ID 2 consists of 4 nucleotides (AACC), the reverse sequence of the following: a HindIII site (including part of the stop codon), stop codon and nucleotides 1246-1217 of Barlow, et al, Mol. Microbiol. 3:131-139 (1989). The sequences are included in the specification, just preceding the claims.
Sequence ID Number 3 (Seq. ID 3). DNA sequence of the pKTH250 insert; P1.7,16. Nucleotide 1 of the sequence shown, corresponds to nucleotide 125 of the sequence from Barlow et al, Mol. Microbiol. 3:131-139 (1989).
Detailed Description of the Invention
Production of OM proteins
As those skilled in the art will appreciate, the methods described in the following paragraphs for Bacillus can be applied with appropriate modifications, if needed, and without undue experimentation, for other gram-positive bacteria.
The Production of OM Proteins by Transforming a Bacillus or Other Gram-Positive Host
A wide variety of suitable expression vectors may be used in the present invention, and are known to those of skill in the art of recombinant genetics. A preferred vector is disclosed in PCT WO 90FI41, filed 2 Feb 1990 and published 23 Aug 1990 as WO 9009448: New Recombinant DNA Molecules for Producing Proteins and Peptides in Bacillus Strains.
The transfer vector may be any plasmid or phage capable of replicating in several copies in a Bacillus strain or other gram-positive bacterium. A multitude of such vectors are available, the most representative of them being the plasmids isolated from Staphy lococcus, Bacillus or
Streptococcus or their derivatives.
The regulation and expression sequence is in most cases first ligated to the transfer vector to be used and is thereafter modified for example by the aid of DNA-linkers so that the genes to be expressed may be joined downstream from the regulation and expression sequence of the vector.
A number of methods to clone OM protein genes can be used in the present invention. Those methods are known to those of skill in the art of recombinant genetics.
Before transformation of the host, a DNA sequence encoding the OM protein (or epitopically functional portion(s) thereof) is ligated to a suitable vector.
The DNA sequences need not be identical to the DNA sequences encoding a particular OM protein as found in a particular natural gene. They may be derived from the sequences of natural genes of OM proteins, but modified in ways that may alter the properties of the resulting protein. Suitable sequences may also be made synthetically or semisynthetically.
The selected host may be transformed and cultivated by conventional methods. The choice of suitable transformation systems and cultivation conditions depends on the selected host. Purification of OM Proteins Produced Intracellularly in Bacillus Host or in Other Gram-Positive Bacteria
The OM proteins produced with the method of the invention often form intracellular inclusion bodies. The main advantage of producing inclusion bodies (or intracellular aggregates of overproduced protein) is that they are easy to purify (Marston and Hartley, Methods of Enzymology
182:264-276 (1990)). The bacterial cells are disrupted by sonication, passage through French pressure cells, lysozyme-treated or by other suitable means. From this suspension the inclusion bodies can be pelleted with low speed centrifugation and usually further washed with a mild detergent. Usually (however, depending on the protein) the inclusion bodies are soluble only in chaotropic agents like urea or guanidine hydrochloride or strong detergents like SDS. In the solubilized form, the proteins can be further purified with conventional purification methods.
If the OM protein produced in Bacillus is not present in inclusion bodies, modifications of the methods above may be applied. The purification may also involve solubilization and differential extraction with various types of detergents, and chromatography and electrophoresis in the presence and absence of detergents.
There are several different ways known to those skilled in the art, in which a composition of the recombinant polypeptides produced by the method of the invention may be prepared. The purified OM proteins or their fragments may be used alone to prepare a pharmaceutically-acceptable dosage form and they may be mixed together in any combination. The recovery of the native epitopes may involve addition of solubihzation and/or denaturing agents such as urea, guanidine hydrochloride and SDS, which may be later removed. It may also involve addition of compounds like
phospholipids and/or sarkosyl or their derivatives and analogs. The preparation may be in a form of liposomes or in another form.
Immunoadjuvants such as aluminium hydroxide and
pharmacologically-acceptable preservatives such as thiomersal may be added to the composition. These methods are described, for example, in Remington
Pharmaceutical Science, 16th Ed., Mac. Eds. (1980).
Without further elaboration, it is believed that one of ordinary skill in the art can, using the preceding description, and the following
Examples, utilize the present invention to the fullest extent. The material disclosed in the examples is for illustrative purposes and therefore should not be construed as being limiting in any way of the appended claims. Examples
Example 1
Cloning of P1.7,16 (class 1) OM Protein of N. meningitidis in IH6627
Cloning of the DΝA Sequence Coding for the Class 1 Protein
The DΝA fragment coding for the mature protein was acquired as follows: using the published nucleotide sequence of meningococcal class 1, P1.7,16 protein (Barlow et al, Mol Microbiol 3:131-139 (1989)) two
oligonucleotides (primer 1 and primer 2; primer 1 is shown herein as Seq. ID 1; primer 2 is Seq. ID 2) were synthesized and used to amplify the DΝA coding for the mature class 1 protein in a polymerase chain reaction (PCR) with chromosomal meningococcal DΝA . The meningococcal DΝA was isolated from strain IH5341 (P1.7,16) grown on protease-peptone plates containing 15% agarose in lieu of agar. After treatment with a zwitterionic detergent in citrate buffer (Domenico et al, J Microbial Methods 9:211-19 (1989)) to remove e.g., capsule, the DΝA was isolated. The PCR reaction was performed using a GeneAmp™ kit using the methods described by the manufacturer (Perkin Elmer Cetus). The amplified DΝA fragments were of two sizes when separated by agarose gel electrophoresis. The bigger fragment seemed to be the expected size for class 1, i.e., about 1100 bp whereas the other fragment was smaller, about 900 bp. The amplified DΝA mixture was purified by phenol extraction, ethanol precipitated, resuspended in TE (10 mM Tris-HCl pH8, 1 mM EDTA) and digested with the restriction enzyme HindIII. Conventional methods of DΝA technology and
microbiology used here and in the following examples are described, e.g., in Sambrook, J., E. F. Fritsch, and T. Maniatis. (1989) Molecular Cloning. A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory, Ν.Y.
The plasmid vector pUC18 was digested with the restriction enzyme HindIII. The linearized vector DΝA was ligated with the
HindIII-digested amplified DΝA. The ligation mixture was used to transform competent Escherichia coli K12 TGI cells which were grown, after
transformation, on Luria plates containing 100 μg/ml ampicillin, 40 μg/ml Xgal and 0.5 Mm IPTG. About 10% of the colonies grown overnight were blue, thus representing the background caused by the vector. In the case of the amplified P1.7,16 DNA, 90 white colonies were tested to check the size of the putative insert. Of these, 11 contained a plasmid with an insert of the expected size. One of these strains, EH1563, containing plasmid pKTH250, was further characterized. It was shown to give the expected sized fragments after treatment with the restriction enzymes HindIII, EcoRl or Kpnl. The insert was sequenced with the Sanger dideoxy sequencing method after subcloning into M13. The sequence of the pKTH250 insert is shown as Seq. ID 3. As expected it shows very few changes compared to the published P1.7,16 sequence (Barlow et al, Mol. Microbiol. 3:131-139 (1989).
Construction of pKTH290 for Intracellular Production of Class 1 OM Protein in Bacillus subtilis
Construction of the plasmid pKTH290 is shown schematically in Fig. 3. Plasmid pKTH250 (pUC18 containing DNA coding for the cloned class 1 protein P1.7,16) was digested with HindIII to release the cloned class 1 gene. Also plasmid pKTH2S9 was digested with HindIII to release the extra adapter copy and to linearize the vector (see Fig. 1). The two HindIII digested plasmids were ligated and the ligation mixture was used to transform IH6140. Cells that had received at least pKTH2S9 were selected on the basis of kanamycin resistance. The size of plasmids present in the colonies which grew on Luria plates containing kanamycin was checked by cell lysis and running samples in an agarose gel by standard methods. Colonies which contained plasmids of the expected size were analyzed for class 1 protein expression by sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGΕ) and SDS-PAGΕ followed by immunoblotting (Western blot). One strain IH6627 containing plasmid pKTH290 which expressed the class 1 protein was further analyzed. The cloning site was checked by Sanger dideoxy sequencing of pKTH290 to ensure that only one copy of the adapter was present. Screening for the Expression of Class 1 Proteins
Produced Intracellularly in Bacillus subtilis The expression of class 1 P1.7,16 protein in Bacillus transformants was screened using SDS-PAGE in the following way: a loopful of bacteria grown on Luria agar plates was suspended in Laemmli sample buffer and after heating at 100 º C, a sample was applied to SDS-PAGE. The class 1 protein was visualized with Coomassie Blue staining (Fig. 3) and with immunostaining of the SDS-PAGE after blotting the proteins onto millipore filter (Western blot). Antisera KH 1110 prepared by immunization of a rabbit with an extract of MenB:15:P1.7,16 bacteria, was used in
immunostaining. The result was confirmed with a P1.7 , 16 specific monoclonal antiserum, obtained from a commercial kit for serotyping meningococci (RIVN, Box 457, 3720 AL Bilthoven, The Netherlands).
One transformant expressing Pl.7,16 protein (strain IH6627) was chosen for further studies.
Similar constructions were also made with DNA coding several other class 1. protein subtypes (P1.15, P1.2, P1.1, P1.9) and meningococcal class 3 protein serotypes 9 and 15. Example 2
Production of BacP1.7,16 Protein, the P1.7,16 (class 1) OM Protein
of N. meningitidis in IH6627
Preparation of Inclusion Bodies (IB) Containing BacP1.7,16 Protein
The bacteria were grown either in liquid or on solid Luria medium containing 10 - 30 μg kanamycin per liter. When growing one liter of Luria broth about 10 g bacterial cells (wet weight) were obtained.
The bacteria were disrupted with lysozyme in the following way: one gram of bacteria grown on Luria agar plates containing kanamycin was suspended in 5 ml of 20 sucrose in buffer (25 mM TrisHCl, pH 8.0; 15 mMMgCl2 containing 1 mg lysozyme/ml). After an incubation of 30 min at 37 ° C the protoplasts were collected by cemrifugation (10,000xg) and lysed by suspending them in 5 ml of 50 mM TrisHCl, pH 8,0. DNa se (1 mg/ml) was added and after five minutes inclusion bodies were collected by centrifugation 10,000xg for 10 min. They were further suspended (washed) in 5 ml of 2 % NP-40 in 50 mM TrisHCl, pH 8.0, and collected by centrifugation 10,000xg for 10 min. A sample of the product was electrophoresed in SDS-PAGE (Laemmli). Fig. 4 shows the protein pattern of this SDS-PAGE stained with Coomassie Blue. BacP1.7,16 protein isolated as inclusion bodies was called BacP1.7,16-IB.
The inclusion body fraction derived from 10 g of bacteria (about 500 mg of protein) contained 300 mg protein, as measured by the Lowry method (Lowry, O.H. et al, J. Biol Chem. 193:265-275 (1951)). The amount of BacP1.7,16 protein in this fraction was roughly estimated by visual inspection of the SDS-PAGE (Fig. 6) to be at least 120 mg. That means that more than 1/3 of the protein present in the inclusion bodies from
IH6627 is BacP1.7,16 protein. It can be calculated that BacP1.7,16 protein comprised at least 25 % of the total cellular protein of IH6627. It can also be calculated that there was more than one hundred mg of BacP1.7,16 protein per liter of culture.
The size of the BacP1.7,16 protein is roughly the same as that of the authentic protein of N. meningitidis in SDS-Page.
Example 3
Intracellular Production of Outer Membrane Protein
OmpA of Escherichia coli in Bacillus subtilis
Construction of the Expression Vector pKTH3125
The plasmid pKTH 217 (described in Puohiniemi, R., M.
Karvonen, J. Vuopio-Varkila, A. Muotiala. I.M. Helander and M. Sarvas. Inf. Imm. 58:1691-1696 (1990)) contains a 2.5 Kb HindIII-BamHI fragment which encodes, starting at the HindIII terminus, the 8 to 325 amino acid residues of the OmpA protein of E. coli. The fragment is flanked at the HindIII terminus by a unique Clal-HindIII fragment. To construct the plasmid pKTH3125, this ClaI-HindIII fragment was replaced by the ClaI-HindIII fragment of the plasmid pKTH288 shown in Figure 1. The latter fragment contains the promoter and truncated, nonfunctional signal sequence of α-amylase. In pKTH3125 they were fused to the DNA fragment encoding the OmpA protein. The plasmids pKTH217 and 288 were digested with endonucleases Clal and HindIII, phenol extracted, ethanol precipitated and resuspended in water. Then 1.2 μg of digested pKTH217 was mixed with 2.5 μg of digested pKTΗ288, treated with polynucleotide kinase and then ligated. All DNA manipulations were performed as described in Maniatis et al, (Maniatis, T., E. F. Fritsch, and J. Sambrook, Molecular Cloning. A
Laboratory Manual. Cold Spring Harbor Laboratory, N. Y. 1982.)
Competent cells of B. subtilis strain IH6140 were then transformed with the ligation mixture as described in Maniatis et al, and plated on Luria-plates containing 10 μg of kanamycin. The expression of OmpA was tested as follows from 24 of more than 104 transformant colonies obtained. About half of the colony was mixed with 10 μl of SDS-PAGE sample buffer, heated to 100º C for 5 minutes and the sample was electrophoresed in SDS-PAGE (Laemmli, U. K. Nature, (London) 227:680-685 (1970)). As judged by the presence of a major band of the size of the mature OmpA protein (Fig. 4, lanes 4, 6-9, 13, 14), several colonies contained OmpA protein. This band also reacted with OmpA serum in immunoblotting. One of them was designated IH6649, and the plasmid in this strain pKTH3125.
Analysis and Purification of OmpA Made in IH6649 IH6649 was grown overnight at 37 ºC with shaking (250 rpm) in liquid culture in twofold-concentrated L-broth containing 10 mg of NaCl per liter, 10 μg of kanamycin per ml, and 30 μl of potato extract per ml (Kallio, P., M. Simonen, I. Palva, and M. Sarvas, J. Gen. Microbiol. 132:677-678 (1986)). Cells from 500 ml of culture were collected by centrifugation (wet weight 5.7 g), protoplasted with lysozyme and disrupted with osmotic shock in the presence of DNase and RNase (about 5 μg/ml) (Schnaitman, C., Manual of Methods for General Bacteriology ASM. Washington DC (1981)). The breakage of cells was monitored by phase contrast microscopy. The
particulate material was then pelleted by centrifugation at 16,000xg, for 10 min. OmpA was not a major band in the supernatant, as analyzed with
SDS-PAGE (Fig. 5, lane 4). The pellet (1.9g wet weight) was resuspended in 50mM TrisHCl, pH 8, and centrifuged at 2,000xg, for 5 min. The pellet (0.9 g wet weight) was resuspended in 10 ml of washing buffer containing 5 mM
EDTA, 150 mM NaCl, 1% NP-40, 50 mM TrisHCl, pH 8. The SDS-PAGE of the suspension showed that it contained OmpA as a major band (Fig, 5, lane 6). The suspension was then centrifuged at 5,000xg, for 10 min. The pellet was washed with PBS and pelleted again (5.000xg, 10 min). The
resulting pellet, 0.38 g (wet weight), was resuspended into 4 ml 50 mM
TrisHCl, pH 8 (Fig. 5, lane 13). The supernatant, after the above 2,000xg centrifugation (Fig. 5, lane 5) also contained OmpA as a major band and that is why it was further centrifuged at 5,000xg, for 10 min. Tnis resultant
supernatant contained only traces of the original OmpA (Fig. 5, lane 11) and the PBS-washed pellet (0.45g wet weight) was resuspended in 5 ml of 50 mM TrisHCl, pH 8 (Fig. 5, lane 14), also contained OmpA but a lesser amount (compare lanes 13 and 14 in Fig. 5 in which the same amount of sample was applied). As a conclusion, surprisingly, when OmpA is expressed in B.
subtilis IH6649 it forms aggregates or inclusion bodies that can be collected by centrifuging at 2,000-5,000xg.
The amount of OmpA in the 2,000xg pellet after washing and the 2.000xg supernatant after pelleting at 5,000xg and washing was estimated visually by comparing the intensity of the OmpA bands in SDS-PAGE-(Fig. 5, lanes 13 and 14) with the intensity of the molecular weight standard bands
(when 5 μl of the standard is applied the 67 kDa and 30 kDa band contain 0.83 μg of protein, the 43 kDa band contains 1.47 μg protein according to the manufacturer. Pharmacia). Into both lanes were applied 3 μl of 1:10 diluted sample. The band in lane 13 was estimated to contain 1.5 μg of OmpA which makes the total amount 20 mg in the 2.000xg pellet. The band in lane 14 was estimated to contain 0.8 μg of OmpA which makes the total amount 13 mg of OmpA in the 5,000xg pellet. The total yield of purified OmpA was thus about 60 mg/l of culture.
Refolding of OM Proteins Produced in Bacillus subtilis and Recovery of Protective Epitopes from BacP1.7,16 Protein Produced in IH 6627
The presence of protective epitopes in refolded BacP1.7,16 protein was analyzed by immunizing mice and analyzing the immune sera in enzyme immunoassay (EIA), and in bactericidal and protection assays. In the case of OmpA the refolding of native epitope was analyzed by a
bacteriophage inhibition assay (Example 8).
Immunization of Mice
The recovery of protective epitopes was tested by immunizing groups of ten mice with 20 μg of BacP1.7,16 protein treated in various ways, given in two injections. The immunizing injection was either subcutaneous or intraperitoneal (i.p.) with 0.1 ml of antigen diluted in PBS. The interval between the two doses was six weeks. The first injection contained an adjuvant as indicated in Tables 1-4. Ten days after the second injection the mice were bled, and the pooled sera analyzed.
Analvsis of the Immune Sera
Enzyme Immunoassay (EIA)
Anti-meningococcal antibodies were measured by EIA (Jalonen et al, J. Infect. 19:127-134 (1989)) using P1.7,16 meningococcal OM
preparation or BacP1.7,16 protein as the antigens. The optimal dose for coating was in both cases 5 μg protein/ml. Bactericidal Assay
(Goldschneider et al, J. Exp. Med. 129:1307-1323 (1969)) N. meningitidis group B:15:P1.7,16 strain H44/76 (from E. Holten, Norway) was used in the bactericidal assay. Meningococci of other subtypes (strains MenB:2b:P1.2:L2 and MenB:15:P1.15:L1,8 from J. T. Poolman, The
Netherlands) were used to assess the specificity of the bactericidal reaction. Fresh quina pig serum was used as complement source. The highest serum dilution that gave 50% killing was taken as the end point titer. It is known that the bactericidal activity of serum correlates with protection. Thus all sera, which were positive in this assay, were also tested in protection assays.
Assay for Protection Against MenB-Infection
The ability of the sera to protect infant rats from bacteremia and meningitis was tested in the experimental infection of 5 day old outbred Wistar rat pups (Saukkconen, Microb. Pathog. 4:203-212 (1988)). A mouse serum (HH209) obtained by immunization with a P 1.7, 16 meningococcal OM preparation was used as a positive control.
The pups were randomized in groups of 6 pups each and injected i.p. with 100 μl of the immune sera in several dilutions (1:10, 1:100, 1:1000). One hour later a bacterial challenge 106 bacteria/ml) was injected i.p. in a volume of 100 μl. Tne development of bacteremia and meningitis was assessed by taking the appropriate samples 6 hours after the challenge to enumerate the viable bacteria by culture.
Protective antibodies reduce the bacterial numbers, which fully correlates with protection from death within 48 hours (Saukkonen et al, Microb. Pathog. 3:261-267 (1987)). Example 4
Immunization of Mice with BacP1.7,16 Protein
Treated With Detergent and Guanidine Hydrochloride
(see Table 1)
Solubilization of BacP1.7,16-IB Protein
BacP1.7,16-IB protein is wholly soluble in SDS, guanidine hydrochloride and urea, but only partially in sarkosyl or cetylammonium bromide. The, protein precipitates if the solubilizing agent is removed. If the agent was guanidine hydrochloride, the precipitated protein is referred to as
BacP1.7,16-Gu. In detail BacP1.7,16-Gu is prepared from BacP1.7,16-IB in the following way: 5 mg of BacP1.7,16-IB protein was solubilized with 1 ml of
6 M guanidine hydrochloride. After centrifugation (for 5 min 5,000xg) the clear supernatant was diluted 1:6 in water and dialyzed against water. The precipitate was collected by centrifugation. BacP1.7,16-Gu differs from BacP1.7,16-IB in being fairly soluble both in sarkosyl and cetylammonium bromide (CTB).
Mice were immunized with BacP1.7,16-IB and -Gu preparations, and with preparations dissolved in the above mentioned detergents (1 mg of protein/1 ml of 2% detergent in 10 mM TrisHCl, pH 8.0 containing 5 mM EDTA) and diluted 1:5 in PBS.
The immune sera were analyzed as above. The result of the tests are shown in Table 1. All the sera contained antibodies against
BacP1.7,16 protein, but only one of them, HH249 prepared with
sarkosyl-solubilized BacP1.7,16-Gu protein, had antibodies against
MenB:P1.7,16 protein and was slightly bactericidal and protective. Example 5
Immunization of mice with BacP1.7,16-LPS Complexes a) One mg of BacP1.7,16-Gu was solubilized in 1 ml of 3 M guanidine hydrochloride. 250 μg of LPS was added and the sample was diluted 1:3 in water and sequentially dialyzed against 0.6 M, 0.3 M and 0.15 M guanidine hydrochloride and 0.15 M NaCl. Before immunization the sample was diluted 1:5 in PBS.
b) One mg of BacP1.7,16-Gu (as in a)) was solubilized in 1 ml of 1% SDS in 10 mM TrisHCl, pH 8.0 containing 5 mM EDTA. 250 μg of LPS was added. The sample was extensively dialyzed against 10 mM
Trisbuffer, pH 8.0. Before immunization the sample was diluted 1:5 in PBS.
c) One mg of BacP1.7,16-Gu (as in a)) was solubilized in 0.1 ml of 1% SDS (as in b)). 250 μg LPS and 0.9 ml RIPA buffer (150 mM NaCl, 1% NP-40, 0.5 Doc, 0.1% SDS in 50 mM TrisHCl, pH 8) were added.
Before immunization the sample was diluted 1:5 in PBS.
The immune sera were analyzed as using the above methods discussed above. The result of the tests are shown in Table 2. All the sera contained substantial amounts of antibodies against BacP1.7,16 protein. They also had antibodies against MenB:P1.7,16-membranes, were bactericidal and protective, which indicates that protective epitopes were obtained by this refolding method.
Example 6
Immunization of Mice with BacP1.7,16-Lecithin Complexes
a) 1 mg BacP1.7.16-Gu was dissolved in 1 ml of 2% SDS in 100 mM TrisHCl, pH 8, and heated for 5 min. at 100º C. The clear supernatant was diluted 1:5 either with 2% octylglucoside or 2% octyloligooxyethylene (octyl-POE), in 100 mM TrisHCl, pH 9, and incubated overnight at room temperature.
b) Preparation of a lecithin-detergent film on glass tube. 100 mg of octylglucoside or octyl-POE was dissolved in 2.5 ml of
chloroform:methanol (2:1) and 20 mg of soybean lecithin in chloroform was added. The chloroform was evaporated away under N2, Solution (a) was added onto the film. After thorough mixing the suspension was dialyzed against PBS for 2 days with 4 exchanges. Before immunization the sample was diluted 1:5 in PBS.
The immune sera were analyzed using the methods disclosed above. The result of the tests are shown in Table 3. All the sera contained antibodies against BacP1.7,16 protein and MenB:P1.7,16-membranes, were bactericidal and protective, which indicates that protective epitopes were obtained by this refolding method.
Example 7
Immunization of Mice with BacP1.7,16 Protein-Lecithin-Sarkosyl Complexes
One mg of BacP1.7,16-IB or BacP1.7,16-Gu was suspended in 1 ml of 2% sarkosyl, and 0.1 ml of soybean lecithin (25 mg/ml of 2% sarkosyl) was added. Before immunization the samples were diluted 1:5 in 0.9% NaCl. In each case the mice received 0.2 ml of the antigen preparation.
The immune sera were analyzed using the methods disclosed above. The result of the tests are shown in Table 4. One of the two sera, prepared with BacP1.7,16-IB protein, contained antibodies against BacP1.7,16 protein and MenB:P1.7,16-membranes, was bactericidal and protective. This indicates that protective epitopes were obtained by this refolding method.
Example 8
Refolding of OmpA by Addition of Lipopolysaccharide Datta et al, J. Bact. 131:821-829 (1977) have shown that the bacteriophage K3 receptor loop, in the purified OmpA of Escherichia coli, can be refolded with the aid of LPS (lipopolysaccharide) and magnesium. This loop consists the amino acid residues centered in amino acid number 70 and is supposed to be located outside the outer membrane. The refolding was measured by phage-binding inhibition assay; e.g., decrease of the number of olaques titrated on indicator E. coli bacteria indicates presence of native epitopes in the refolded BacOmpA. It has been shown that BacOmpA228OmpA228-SS (a tandem
duplication of amino acid 8-228 of OmpA with complete signal sequence of Bacillus amyloliquefacien (produced in the strain IH6443) can be refolded similarly as purified OmpA of E. coli. The conformation of OmpA
(BacOmpA-SSΔ) by LPS was studied using BacOmpA228OmpA228-SS protein as a positive control. The BacOmpA-SSΔ, as shown in Table 5, was able to
inhibit the binding of K3 phages to the indicator E. coli. The mass needed was, however, more than that of BacOmpA22gOmpA228-SS, as 15 μg of
BacOmpA228OmpA228-SS( + LPS) inhibited 83% of the phage binding, whereas 75 μg of BacOmpA-ssΔ ( +LPS) was needed to inhibit 70% of the phage binding. Hence binding by BacOmpA-ssΔ+LPS is less efficient. It can be said that the phage binding capacity of BacOmpA-SSΔ can be restored with LPS to a limited extent. Deposits
Plasmid pKTH290 in Bacillus subtilis in the parent strain IH6140 (the recombinant strain denoted as strain IH6627) was deposited on July 5, 1990 with the Deutsche Sammlung von Mikroorganismen (DSM),
Mascheroder Weg 1, D-3300 Braunschweig, Federal Republic of Germany, under the terms of the Budapest Treaty on the International Recognition of Deposits of Microorganisms for Purposes of Patent Procedure and the
Regulations promulgated under the Treaty. The deposit has been accorded DSM Deposit No. DSM 60S9. Samples of Bacillus subtilis containing plasmid pKTH290 are and will be available to industrial property offices and other persons legally entitled to receive them under the terms of the Treaty and
Regulations and otherwise in compliance with the patent laws and regulations of all nations or international organizations in which this application, or an application claiming priority of this application, is filed or in which any patent granted on any such application is granted.
Figure imgf000028_0001
Figure imgf000029_0001
Figure imgf000030_0001
Figure imgf000031_0001
Summary
It may be seen that the invention provides a method for producing cloned and renatured outer membrane (OM) protein from pathogenic gram-negative bacteria. The renatured (OM) proteins produced by the method of the invention have immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and can provide protection against infection by pathogenic gram-negative bacteria. These cloned renatured OM proteins are useful as diagnostic antigens for the identification of infections caused by gram-negative bacteria. They are also useful as vaccines or as components of vaccines.
Various modifications of the invention in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description. Such modifications are intended to fall within the scope of the appended claims.
(2) INFORMATION FOR SEQ ID NO: 1 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 40 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: DNA (genomic)
(iii) HYPOTHETICAL: NO
(iv) ANTI-SENSE: NO
(v) FRAGMENT TYPE: internal
(vi) ORIGINAL SOURCE:
(A) ORGANISM: Neisseria meningitidis
(B) STRAIN: IH5341
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1:
AACCAAGCTT GATGTCAGCC TGTACGGCGA AATCAAAGCC 40
(2) INFORMATION FOR SEQ ID NO : 2 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 41 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: DNA (genomic)
(iii) HYPOTHETICAL: NO
(iv) ANTI-SENSE: NO
(v) FRAGMENT TYPE: internal
(Vi) ORIGINAL SOURCE:
(A) ORGANISM: Neisseria meningitidis
(B) STRAIN: IH5341
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2: AACCAAGCTT AGAATTTGTG GCGCAAACCG ACGGAGGCGG C 41 (2) INFORMATION FOR SEQ ID NO: 3:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1122 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: DNA (genomic)
(iii) HYPOTHETICAL: NO
(iv) ANTI-SENSE: NO
(v) FRAGMENT TYPE: internal
(vi) ORIGINAL SOURCE:
(A) ORGANISM: Neisseria meningitidis
(B) STRAIN: IH5341
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3:
GATGTCAGCC TGTACGGCGA AATCAAAGCC GGCGTGGAAG GCAGGAACTA CCAGCTGCAA 60
TTGACTGAAG CACAAGCCGC TAACGGTGGA GCGAGCGGTC AGGTAAAAGT TACTAAΛGTT 120
ACTAAGGCCA AAAGCCGCAT CAGGACGAAA ATCAGTGATT TCGGCTCGTT TATCGGCTTT 180
AAGGGGAGTG AGGATTTGGG CGACGGGCTG AAGGCTGTTT GGCAGCTTGA GCAAGACGTA 240
TCCGTTGCCG GCGGCGGCGC GACCCAGTGG GGCAACAGGG AATCCTTTAT CGGCTTGGCA 300
GGCGAATTCG GTACGCTGCG CGCCGGTCGC GCTGCGAATC AGTTTGACGA TGCCAGCCAA 360
GCCATTGATC CTTGGGACAG CAATAATGAT GTGGCTTCGC AATTGGGTAT TTTCAAACGC 420
CACGACGACA TGCCGGTTTC CGTACGCTAC GATTCCCCCG AATTTTCCGG TTTCAGCGGC 480
AGCGTTCAAT TCGTTCCGAT CCAAAACAGC AAGTCCGCCT ATACGCCGGC TTATTATACT 540
AAGGATACAA ACAATAATCT TACTCTCGTT CCGGCTGTTG TCGGCAAGCC CGGATCGGAT 600
GTGTATTATG CCGGTCTGAA TTACAAAAAT GGCGGTTTTG CCGGGAACTA TGCCTTTAAA 660
TATGCGAGAC ACGCCAATGT CGGACGTAAT GCTTTTGAGT TGTTCTTGAT CGGCAGCGGG 720
AGTGATCAAG CCAAAGGTAC CGATCCCTTG AAAAACCATC AGGTACACCG TCTGACGGGC 780
GGCTATGAGG AAGGCG3CTT GAATCTCGCC TTGGCGGCTC AGTTGGATTT GTCTGAAAAT 840
GGCGACAAAA CCAAAAACAG TACGACCGAA ATTGCCGCCA CTGCTTCCTA CCGCTTCGGT 900
AATGCAGTTC CACGCATCAG CTATGCCCAT GGTTTCGACT TTATCGAACG CGGTAAAAAA 960
GGCGAAAATA CCAGCTACGA TCAAATCATC GCCGGCGTTG ATTATGATTT TTCCAAACGC 1020
ACTTCCGCCA TCGTGTCTGG CGCTTGGCTG AAACGCAATA CCGGCATCGG CAACTACACT 1080
CAAATTAATG CCGCCGCCGT CGGTTTGCGC CACAAATTCT AA 1122

Claims

What is claimed is:
1. A method for producing cloned outer membrane protein from pathogenic gram-negative bacteria and renaturing the cloned outer membrane protein thus produced so as to regain immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and capable of providing protection against infection by the original infectious agent, said method comprising: (a) expressing in a gram-positive bacterial host DNA encoding outer membrane protein from gram-negative bacteria known to be pathogenic in humans and animals, (b) renaturing said outer membrane protein from step (a) so as to regain biologically or immunologically active epitopes which are capable of eliciting production of antibodies in animals and humans that are bactericidal and protect said animals and humans from infection by said gram-negative bacteria known to be pathogenic in humans and animals.
2. The method of Claim 1 wherein said bacterial host is any bacterium of the genus Bacillus.
3. The method of Claim 1 wherein said host is Bacillus subtilis.
4. The method of Claim 1 wherein said DNA encoding said outer membrane protein is selected from the group consisting of DNA sequences encoding outer membrane proteins of Neisseria meningitidis, Neisseria gonorrhoeae, Haemophilus influenzae, Yersinia sp. and Brucella sp.
5. The method of the Claim 1 wherein said DNA sequence encoding said outer membrane protein is a DNA sequence encoding class 1 outer membrane protein of Neisseria meningitidis.
6. The method of Claim 1 wherein said outer membrane protein from step (a) is renatured with an agent or combination of agents selected from the group consisting of SDS. guanidine hydrochloride, cerylammonium bromide, phospholipiαs. lecithin, sarkosyl and urea.
7. Outer membrane protein of pathogenic gram-negative bacteria prepared by any of the methods of Claims 1-6.
8. Outer membrane protein of pathogenic gram-negative bacteria, wherein the outer membrane protein is class 1 outer membrane protein of Neisseria meningitidis, prepared by any of the methods of Claims 1-6.
9. Outer membrane protein of pathogenic gram-negative bacteria, wherein the outer membrane protein is class 1 outer membrane protein of Neisseria meningitidis, and further wherein said class 1 outer membrane protein is from a strain of Neisseria meningitidis which belongs to serogroup B, prepared by any of the methods of Claims 1-6.
10. A composition comprising cloned and renatured outer membrane protein produced by any of the methods of Claims 1-6.
11. A composition comprising cloned and renatured outer membrane protein produced by any of the methods of Claims 1-6, wherein said composition is in a pharmaceutically acceptable dosage form.
12. A vaccine comprising cloned and renatured outer membrane protein produced by any of the methods of Claims 1-6.
13. A vaccine according to Claim 12 wherein said vaccine also contains imimmoadjuvants and pharmacologically-acceptable preservatives.
14. Use of outer membrane proteins of any of Claims 7-10 as antigenic diagnostic reagents for detecting antibodies against pathogenic gram-negative bacteria with immunological methods.
15. Use of outer membrane proteins of any of Claims 7-10 as a vaccine or component thereof.
16. A method for producing cloned outer membrane protein from pathogenic gram-negative bacteria and renaturing the cloned outer membrane protein thus produced so as to regain immunologically active epitopes which are capable of eliciting production of antibodies, in mammals and other animals, that are bactericidal and capable of providing protection against infection by the original infectious agent, said method comprising: (a) expressing in a gram-positive bacterial host DNA encoding outer membrane protein from class 1 outer membrane protein of Neisseria meningitidis (b) renaturing said outer membrane protein from step (a) so as to regain biologically or immunologically active epitopes which are capable of eliciting production of antibodies in animals and humans that are bactericidal and protect said animals and humans from infection by Neisseria meningitidis.
17. The method of Claim 16 wherein said bacterial host is any bacterium of the genus Bacillus.
18. The method of Claim 16 wherein said host is Bacillus subtilis.
19. The method of Claim 16 wherein said outer membrane protein from step (a) is renatured with an agent or combination of agents selected from the group consisting of SDS,. guanidine hydrochloride, cetylammonium bromide, phospholipids, lecithin, sarkosyl and urea.
20. Class 1 outer membrane protein of Neisseria meningitidis, prepared by any of the methods of Claims 16-19.
21. Class 1 outer membrane protein of Neisseria meningitidis, wherein said class 1 outer membrane protein is from a strain oi Neisseria meningitidis which belongs to serogroup B, prepared by any of the methods of Claims 16-19.
22. A composition comprising cloned and renatured outer membrane oi Neisseria meningitidis produced by any of the methods of Claims 16-19.
23. A composition comprising cloned and renatured outer membrane protein of Neisseria meningitidis produced by any of the methods of Claims 16-19, wherein said composition is in a pharmaceutically acceptable dosage form.
24. A vaccine comprising Class 1 outer membrane protein of
Neisseria meningitidis, prepared by any of the methods of Claims 16-19.
25. A vaccine according to Claim 24 wherein said vaccine also contains immunoadjuvams and pharmacologically-acceptable preservatives.
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US5439808A (en) * 1993-07-23 1995-08-08 North American Vaccine, Inc. Method for the high level expression, purification and refolding of the outer membrane group B porin proteins from Neisseria meningitidis
US5879686A (en) * 1993-07-23 1999-03-09 North American Vaccine, Inc. Method for the high level expression, purification and refolding of the outer membrane group B porin proteins from Neisseria meningitidis
US6013267A (en) * 1993-07-23 2000-01-11 North American Vaccine, Inc. Method for the high level expression, purification and refolding of the outer membrane group B porin proteins from Neisseria meningitidis
US6153406A (en) * 1993-07-23 2000-11-28 North American Vaccine, Inc. Method for the high level expression, purification and refolding of the outer membrane protein P2 from Haemophilus influenzae type B
WO1995020048A1 (en) * 1994-01-19 1995-07-27 Forschungszentrum Jülich GmbH Secretion of proteins from the outer membrane of gram-negative bacteria by gram-positive host organisms
US5747287A (en) * 1995-04-28 1998-05-05 North American Vaccine, Inc. Method for the high level expression, purification and refolding of the outer membrane group B porin proteins from Neisseria meningitidis
US6350449B1 (en) 1995-06-07 2002-02-26 Baxter International Inc. Antibodies to meningococcal polysaccharide conjugate vaccines
WO1998056817A1 (en) * 1997-06-09 1998-12-17 Karolinska Innovations Ab Composition and methods for the treatment of inflammatory diseases
FR2785293A1 (en) * 1998-10-30 2000-05-05 Pasteur Merieux Serums Vacc NUCLEIC ACIDS AND POLYPEPTIDES SPECIFIC TO PATHOGENIC STRAINS OF THE GENUS NEISSERIA
WO2000026375A3 (en) * 1998-10-30 2000-08-17 Pasteur Merieux Serums Vacc Nucleic acids and polypeptides specific of the neisseria genus pathogenic strains

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JPH06511140A (en) 1994-12-15
IL98727A0 (en) 1992-07-15
AU8187391A (en) 1992-02-04
FI903414A0 (en) 1990-07-06
AU6069296A (en) 1996-11-07
ZA915234B (en) 1993-02-24
CA2086761A1 (en) 1992-01-07
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EP0538318A1 (en) 1993-04-28
AU668075B2 (en) 1996-04-26

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