NEUROTROPHIN ANTAGONISTS
FIELD OF THE INVENTION
The present invention relates to neurotrophin antagonists. In particular, the present invention relates to neurotrophin-derived peptides which inhibit or reduce undesirable neurotrophin activity.
BACKGROUND OF THE INVENTION
A family of structurally and functionally related neurotrophic factors exist which are collectively known as neurotrophins. The family of neurotrophins include the nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), neurotrophin-3 (NT-3), neurotrophin-4 (NT-4) neurotrophin-5 (NT-5) and neurotrophin-6 (NT-6).
The neurotrophins exhibit similar structural conformations, including three surface β-hairpin loops, a β-strand, an internal reverse turn region, and N- and C- termini. With respect to sequence similarities, the neurotrophins share approximately 50% amino acid identity. The neurotrophins are also functionally similar in that they each exhibit low affinity binding to a receptor known as the "p75 nerve growth factor receptor" or p75NσFR. Each neurotrophin also exhibits binding to a receptor of the tyrosine kinase (trk) family which is of higher affinity than the binding to the p75 receptor. This interaction is believed to be related to neuron survival, but is also involved with neuron differentiation including process formation. The Trk receptor- neurotrophin interaction has been found to be more selective than neurotrophin interaction with the p75NσFR receptor. In particular, NGF binds only a trk receptor known as the TrkA receptor, while BDNF, NT-4 and NT-5 exhibit exclusive binding to a TrkB receptor. NT-3 is less selective and, although it binds primarily with a TrkC receptor, it also exhibits some binding to the TrkA and TrkB receptors (Ibanez et al., EMBO J. 1993, 12:2281).
The neurotrophins function primarily to promote survival of certain classes of peripheral and central neurons both during development and following neuronal
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damage. NGF, in particular, is involved with the development of neurons in the peripheral nervous system and supports neuronal survival, as well as enhancing and maintaining the differentiated state of neurons. However, in some neurological disease states, the neurotrophins may also support inappropriate neurite outgrowth thereby facilitating the progression of a disease condition. For example, neurotrophins promote the undesirable sprouting of hippocampal "mossy fibres". Such inappropriate sprouting of mossy fibres is a common accompaniment of epilepsy in humans. In other pathological states, such as Alzheimer's disease, aberrant process growth, known as dystrophic neurite formation, is a strong correlate of disease severity.
Thus, although the neurotrophins are essential for the normal development and growth of neurons, they may be detrimental under certain circumstances. In such instances, ligands capable of inhibiting or reducing selected neurotrophin-mediated activities would be desirable therapeutically to treat neurodegenerative disease and repair of nervous system injury.
SUMMARY OF THE INVENTION
It is an object of the present invention to provide peptides capable of inhibiting, or at least reducing, undesirable neurotrophin-mediated activity.
Accordingly, in one of its aspects the present invention provides bicyclic neurotrophin-derived peptides, or functional equivalents thereof, which inhibit a neurotrophin-mediated activity.
Another aspect of the present invention provides a peptide comprising amino acids from positions 58-68 and 108-110 of a neurotrophin, or a functional equivalent thereof, wherein the amino acid from position 58 is covalently bound to the amino acid from position 108 and the amino acid from position 68 is covalently bound to the amino acid at position 110 to form a bicyclic structure.
In another aspect of the present invention, a composition is provided which
SUBSTITUTE SHEET
includes a carrier and a peptide comprising amino acids from positions 58-68 and 108-110 of a neurotrophin, or a functional equivalent thereof, wherein the amino acid from position 58 is covalently bound to the amino acid from position 108 and the amino acid from position 68 is covalently bound to the amino acid at position 110 to form a bicyclic structure.
In a further aspect of the present invention, there is provided a method for inhibiting a neurotrophin-mediated activity comprising the step of exposing neurons to a composition as described above including a bicyclic peptide in combination with a suitable carrier.
A further aspect of the present invention provides a method for inhibiting neurotrphin-mediated activity in a mammal comprising the step of administering to said mammal a therapeutically effective amount of a composition which includes a bicyclic neurotrophin-derived peptide in combination with a pharmaceutical carrier.
These and other aspects of the present invention will be described in detail by reference to the following figures in which:
BRIEF REFERENCE TO THE DRAWINGS
Figure 1 illustrates generally the structure of a neurotrophin;
Figure 2 illustrates linear, cyclic and bicyclic peptides prepared from the 68- 58/108-110 region of NGF;
Figure 3 graphically illustrates the effect of the bicyclic NGF peptide of Fig. 2 on neurite outgrowth; and
Figure 4 illustrates the effects of the peptides of Fig. 2 on kindling-induced seizures.
DETAILED DESCRIPTION OF THE INVENTION
The present invention relates to bicyclic neurotrophin-derived peptides, or functional equivalents thereof, which inhibit a neurotrophin-mediated activity.
SUBSTITUTE SHEET
As it is used herein, the term "neurotrophin" refers to neurotrophic factors that are structurally homologous to NGF, i.e. include three surface β-hairpin loops, a β- strand, an internal reverse turn region, and N- and C- termini as illustrated in Fig. 1, and which promote at least one of neuron survival and neuron differentiation, as determined using assays of conventional design such as the in vitro assay exemplified herein and described by Riopelle et al. in the Can. J. of Phys. and Pharm. , 1982, 60:707. Mammalian nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), neurotrophin-3 (NT-3), neurotrophin-4 (NT-4) and neurotrophin-5 (NT-5) are examples of neurotrophins.
The term "neurotrophin-derived" refers to peptides comprising an amino acid sequence native to a given mammalian neurotrophin.
"Functional equivalents" of neurotrophin-derived peptides in accordance with the present invention are peptides which differ from a neurotrophin-derived peptide, by deletion, replacement or modification of one or more of its amino acids, but which retains the activity of the neurotrophin-derived peptide, i.e. is capable of inhibiting a neurotrophin-mediated activity. Functional equivalents of a neurotrophin-derived peptide in accordance with the present invention may comprise, for example, conservative amino acid replacements of native amino acids, e.g. an amino acid of the neurotrophin-derived peptide may be replaced with an amino acid having a similar charge such as replacement of an arginine residue with a lysine residue. Alternatively, the neurotrophin-derived peptide may include derivatized internal or terminal amino acids, as discussed in more detail herein, to yield a peptide which retains the activity of the neurotrophin-derived peptide.
"Neurotrophin-mediated activity" is a biological activity that is normally promoted, either directly or indirectly, in the presence of a neurotrophin. Neurotrophin-mediated activities include, for example, neurotrophin binding to the p75NOFR receptor or neurotrophin binding to one of the trk receptors, neuron survival, neuron differentiation including neuron process formation and neurite outgrowth, and biochemical changes such as enzyme induction. A biological activity that is mediated
SUBSTITUTE SHEET
by a particular neurotrophin, e.g. NGF, is referred to herein by reference to that neurotrophin, e.g. NGF-mediated activity. To determine the ability of a bicyclic peptide, or a functional equivalent thereof, to inhibit a neurotrophin-mediated activity, conventional in vitro and ]n vivo assays can be used. For example, a receptor affinity cross-linking assay, such as the assay described in herein in Example 2, can be used to assess the extent to which a bicyclic peptide inhibits neurotroph in/receptor binding. Peptide inhibition of neurite survival and outgrowth can be determined using the m vitro assay described by Riopelle et al. in the Can. J. of Phys. and Pharm., 1982, 60:707, exemplified herein in Example 3, or using the in vivo kindling experiment described in Example 4.
The term "bicyclic" is used herein to refer to a peptide in which there exists two ring closures. The ring closures are formed by covalent linkages between amino acids in the peptide. A covalent linkage between two non-adjacent amino acids constitutes a ring closure, as does a second covalent linkage between a pair of adjacent amino acids which are already linked by a covalent peptide linkage. The covalent linkages forming the ring closures may be amide linkages, i.e. the linkage formed between a free amino on one amino acid and a free carboxyl of a second amino acid, or linkages formed between the side chains or "R" groups of amino acids in the peptides. Thus, bicyclic peptides in accordance with the present invention may be "true" bicyclic peptides, i.e. peptides cyclized by the formation of a peptide bond between the N-terminus and the C-terminus of the peptide, or they may be "depsi- bicyclic" peptides, i.e. peptides in which the terminal amino acids are covalently linked through their side chain moities.
In one aspect, the bicyclic peptide is consistent with the internal reverse turn region of the selected neurotrophin. The reverse turn region of a neurotrophin extends from the amino acid at position 58 to the amino acid at position 68, and includes also the region extending from the amino acid at position 108 to the amino acid at position 110, as illustrated in Figure 1. The "reverse turn" results from the dual linkage occurring in this region. The dual linkage includes a first covalent linkage between the amino acid at position 58 and the amino acid at position 108, and
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SUBSTITUTE SHEET
a second covalent linkage between the amino acid at position 68 and the amino acid at position 110.
Depsi-bicyclic peptides in accordance with the present invention result from the formation of covalent linkages between the side chains of the amino acids from positions 58, 68, 108 and 110. Preferably, the amino acid residues from these positions have side chains that will readily react to form such covalent linkages. For example, cysteine residues are particularly suitable amino acids for this purpose since the free thiol R groups of cysteine residues readily oxidize to form covalent disulfide bridges. Alternatively, the R groups of the amino acids in these positions can be derivatized to yield groups, such as free thiol groups, which will readily react to form the desired covalent linkages. In another alternative, amino acids from positions 58 and 108, and positions 68 and 110, can be selected to have R groups, or derivatized to yield R groups, which will form amide linkages. Thus, for example, an amide linkage can be formed between the amino acids from positions 58 and 108 if the amino acid at one of these positions yields a free amino group, while the amino acid at the other position yields a free carboxyl group. Examples of amino acids which yield a free amino group suitable for the formation of an amide bond are lysine, asparagine and giutamine. Examples of amino acids which yield a free carboxyl group suitable for the formation of an amide bond are glutamic acid and aspartic acid.
In the case of depsi-bicyclic peptides, it will be appreciated that the N- and C- termini remain as free amino and free carboxyl residues, respectively, since it is the side chains of the terminal amino acids which are involved in the covalent cyclizing linkage. The free terminal amino and carboxyl groups may also be derivatized or altered without affecting the activity of the peptide as an inhibitor of a neurotrophin- mediated activity. For example, the termini may be derivatized to include a non- peptidic blocking group that will prevent potential degradation at the N- and C- terminal ends from occurring. Such non-peptidic groups include protecting groups such as those conventionally used in the art of peptide synthesis which will not adversely affect the in vitro and m vivo uses of the bicyclic peptide. For example, suitable non-peptidic N-terminal blocking groups can be introduced by alkylation or
SUBSTITUTΪfsHEET
acylation of the N-terminus. Examples of suitable N-terminal blocking groups include CrC5 branched or unbranched alkyl groups, acyl groups such as formyl and acetyl groups, as well as substituted forms thereof. Amino acid analogues lacking the amino functionality are also useful to block the N-terminus. Suitable non-peptidic C- terminal blocking groups, in which the carboxyl group of the C-terminus may be either incoφorated or not, include esters, ketones or amides. Ester or ketone-for ing alkyl groups, particularly lower alkyl groups such as methyl, ethyl and propyl, and amide-forming amino groups such as primary amines (-NH2), and mono- and di¬ alkylamino groups such as methylamino, ethylamino, dimethylamino, diethylamino, methylethylamino and the like are examples of C-terminal blocking groups. Amino acid analogues lacking the carboxyl functionality are also useful C-terminal blocking groups such as agmatine. Further, it will be appreciated that the free amino and carboxyl groups at the termini can be removed altogether from the bicyclic peptide to yield desamino and descarboxylated forms thereof without affect on peptide activity.
True bicyclic peptides are also peptides in accordance with the present invention. Such peptides result from the formation of a peptide linkage between the N-terminal amino group of the amino acid from position 68 and the C-terminal carboxyl group of the amino acid from position 110.
Bicyclic peptides in accordance with the present invention may be derived from any mammalian neurotrophin due to the highly homologous nature of neurotrophins among different species with regard to both conformation and amino acid sequence. In particular, the amino acid residues of neurotrophins at positions 58, 68 and 108-110 are conserved across species and have been found to play an important role in peptide conformation. The amino acid residues in positions 59-67 do not appear to be important for peptide conformation, and further have not been found to participate in NGF interactions (Drinkwater et al., J. Biol. Chem. 1993, 268(31):23202). The bicyclic peptides of the present invention, thus, may be derived from the 58-68/108-110 amino acid region of, for example, human, mouse or rat NGF. Likewise, the bicyclic peptide may be derived from the 58-68/108-110 region
SUBST
of any mammalian BDNF or NT-3. The following general formula (I) defines the bicyclic peptides:
AA68-XX-C58-C108-V-AA110 (SEQ ID NO: 1) (I) wherein
AA68 is selected from cysteine, the desamino form thereof, and an N- terminally blocked cysteine;
AA110 is selected from cysteine, descarboxylate cysteine, and a C- terminally blocked cysteine; and
XX represents a peptide comprising from 1-10 amino acid residues.
In one aspect the bicyclic peptide has an amino acid sequence represented by formula (II):
AA68-G-S-XrV-P-N-X2-X3-R-C58-C,08-V-AAπo (SEQ ID NO:2) (II) wherein
AA68 and AA110 are as defined above;
X, is an acidic amino acid;
X2 is selected from the group consisting of a non-polar amino acid and an uncharged polar amino acid; and
X3 is selected from the group consisting of an acidic amino acid and a non-polar amino acid.
In this regard, acidic amino acid refers to an amino acid which is negatively charged at pH 6.0, a non-polar amino acid refers to an amino acid having a non-polar side-chain such as alanine, leucine, methionine and proline, and an uncharged polar amino acid refers to an amino acid having an uncharged polar side-chain such as glycine, serine, cysteine and asparagine.
In another aspect the bicyclic peptide has an amino acid sequence represented generally by formula (II):
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SUBSTITUTE SHEET
AA^-G-S-X V-P-N-X^-R-C^-C^-V-AA110 (SEQ ID NO:2) (II) wherein
AA68 and AA110 are as defined above;
X, is selected from glutamic acid and aspartic acid;
X2 is selected from proline and serine; and
X3 is selected from aspartic acid and alanine.
Specific peptide sequences in accordance with the present invention derived from mouse and human neurotrophins include:
NGFm C68-G-S-E-V-P-N-S-A-R-C58-C108-V-C"° (SEQ ID NO: 3)
NGFhum C68-G-S-D-V-P-N-P-D-R-C58-C108-V-C110 (SEQ ID NO:4)
BDNFm C68-G-E-K-T-Y-C-M-P-N-C58-C,08-V-Cno (SEQ ID NO:5)
BDNF^ C68-G-E-K-T-Y-G-M-P-N-C 8-C,08-V-Cuo (SEQ ID NO:6)
NT-3m C68-G-N-K-V-P-R-A-E-K-C58-C10 -V-Cno (SEQ ID NO:7)
NT-3num C68-G-N-K-V-P-R-A-E-K-C58-C108-V-Cno (SEQ ID NO:7)
In a specific embodiment of the present invention, a bicyclic peptide derived from the 58-68/108-110 region of mouse NGF, as illustrated in Figure 2, was prepared and found to inhibit rat NGF-mediated activity. In particular, and as set out in detail in the specific examples herein, the bicyclic peptide inhibited cross-linking of NGF to both the p75NOFR receptor and the trkA receptor, and inhibited NGF- mediated neurite outgrowth as determined both in vitro and vivo.
The bicyclic peptides of the present invention may be readily prepared by standard, well-established solid-phase peptide synthesis (SPPS) as described by Stewart et al. in Solid Phase Peptide Synthesis. 2nd Edition, 1984, Pierce Chemical Company, Rockfor, Illinois; and as described by Bodanszky and Bodanszky in The Practice of Peptide Synthesis. 1984, Springer- Verlag, New York. At the outset, a suitably protected amino acid residue is attached through its carboxyl group to a
SUBSTITUTE SHEET
derivatized, insoluble polymeric support, such as cross-linked polystyrene or polyamide resin. "Suitably protected" refers to the presence of protecting groups on both the α-amino group of the amino acid, and on any side chain functional groups. Side chain protecting groups are generally stable to the solvents, reagents and reaction conditions used throughout the synthesis, and are removable under conditions which will not affect the final peptide product. Stepwise synthesis of the oligopeptide is carried out by the removal of the N-protecting group from the initial amino acid, and coupling thereto of the carboxyl end of the next amino acid in the sequence of the desired peptide. This amino acid is also suitably protected. The carboxyl of the incoming amino acid can be activated to react with the N-terminus of the support- bound amino acid by formation into a reactive group such as formation into a carbodiimide, a symmetric acid anhydride or an "active ester" group such as hydroxybenzotriazole or pentafluorophenyl esters.
Examples of solid phase peptide synthesis methods include the BOC method which utilizes tert-butyloxycarbonvl as the α-amino protecting group, and the FMOC method which utilizes 9-fluorenylmethyloxycarbonyl to protect the α-amino of the amino acid residues, both methods of which are well-known by those of skill in the art.
Incorporation of N- and/or C- protecting groups can also be achieved using protocols conventional to solid phase peptide synthesis methods. For incoφoration of C-terminal protecting groups, for example, synthesis of the desired peptide is typically performed using, as solid phase, a supporting resin that has been chemically modified so that cleavage from the resin results in a peptide having the desired C- terminal protecting group. To provide peptides in which the C-terminus bears a primary amino protecting group, for instance, synthesis is performed using a p- methylbenzhydry lamine (MBH A) resin so that, when peptide synthesis is completed, treatment with hydrofluoric acid releases the desired C-terminally amidated peptide. Similarly, incoφoration of an N-methylamine protecting group at the C-terminus is achieved using N-methylaminoethyl-derivatized DVB resin, which upon HF treatment releases peptide bearing an N-methylamidated C-terminus. Protection of the C-
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SUBSTITUTE SHEET
terminus by esterification can also be achieved using conventional procedures. This entails use of resin/blocking group combination that permits release of side-chain protected peptide from the resin, to allow for subsequent reaction with the desired alcohol, to form the ester function. FMOC protecting groups, in combination with DVB resin derivatized with methoxyalkoxybenzyl alcohol or equivalent linker, can be used for this puφose, with cleavage from the support being effected by TFA in dicholoromethane. Esterification of the suitably activated carboxyl function e.g. with DCC, can then proceed by addition of the desired alcohol, followed by deprotection and isolation of the esterified peptide product.
Incoφoration of N-terminal protecting groups can be achieved while the synthesized peptide is still attached to the resin, for instance by treatment with suitable anhydride and nitrile. To incoφorate an acetyl protecting group at the N- terminus, for instance, the resin-coupled peptide can be treated with 20% acetic anhydride in acetonitrile. The N-protected peptide product can then be cleaved from the resin, deprotected and subsequently isolated.
Recombinant techniques, well-established in the art, can also be used to prepare peptides in accordance with the present invention. DNA encoding the desired peptide is prepared and inserted into an appropriate expression vector. The vector is used to transfect a suitable host organism for production of the peptide. Conventional techniques are then used to culture the host and to isolate the peptide product from the cell culture media.
To ensure that the peptide obtained from either chemical or biological synthetic techniques is the desired peptide, analysis of the peptide composition should be carried out. Such amino acid composition analysis may be conducted using high resolution mass spectrometry to determine the molecular weight of the peptide. Alternatively, the amino acid content of the peptide can be confirmed by hydrolyzing the peptide in aqueous acid, and separating, identifying and quantifying the components of the mixture using HPLC, or an amino acid analyzer. Protein sequenators, which sequentially degrade the peptide and identify the amino acids in
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SUBSTITUTE SHEET
order, may also be used to determine definitely the sequence of the peptide.
Having confirmed the identity of the peptide in linear form, it is then cyclized to form an active bicyclic peptide in accordance with the present invention. Many techniques are available for appropriately cyclizing the peptide, and the protocol used will depend on the type of linkages used to form the bicyclic product. As outlined above, there are numerous covalent linkages which are suitable to cyclize the peptide including, for example, side chain linkages such as disulfide linkages and peptide or amide linkages. In one embodiment of the present invention, disulfide linkages were used to form a bicyclic peptide as illustrated in Fig. 2. The internal cysteine residues of the linear peptide were first protected in order to conduct the cyclization reactions in a stepwise fashion. The protected peptide was then air oxidized to allow a disulfide linkage to form between the terminal cysteine residues. Following this cyclization reaction, the protecting groups were removed from the internal cysteine residues, and the peptide was again subjected to oxidizing conditions to allow a disulfide linkage to form between the internal cysteine residues thereby resulting in the bicyclic peptide.
Prior to its use to inhibit neurotrophin-mediated activity, the bicyclic peptide is purified to remove contaminants which may adversely affect its activity. In this regard, it will be appreciated that strict standards of purity, such as those required for pharmaceutical compounds, may not be required for use of the present compounds in vitro. On the other hand, if a compound according to the present invention is to be used in a pharmaceutical sense, it must be purified so as to meet the standards set out by the appropriate regulatory agencies. Any one of a number of conventional purification procedures may be used to attain the required level of purity including, for example, reversed-phase high-pressure liquid chromatography (HPLC) using an alkylated silica column such as Q-, C8- or Clg- silica. A gradient mobile phase of increasing organic content is generally used to achieve purification, for example, acetonitrile in an aqueous buffer, usually containing a small amount of trifluoroacetic acid. Ion-exchange chromatography can also be used to separate peptides based on their charge.
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SUBSTITUTE SHEET
Bicyclic peptides of the present invention are useful to inhibit or reduce undesirable neurotrophin activity both in vitro and in vivo. Thus, in another aspect of the invention, a composition comprising an effective amount of a neurotrophin- derived bicyclic peptide and a suitable carrier is provided. By "suitable carrier" is meant a carrier which admixes with the selected bicyclic peptide to yield a composition suitable for the application for which it is to be used. By "effective amount" is meant an amount of bicyclic peptide sufficient to inhibit an undesired neurotrophin-mediated activity by about 50% as determined using assays of conventional design such as those described herein in the specific examples.
The present bicyclic peptides have use as media supplements to prevent undesirable neurotrophin-mediated activity of neuron cells in vitro. For example, primary sensory neurons require NGF for survival in cell culture; however, NGF also influences neuron differentiation, notably process formation and outgrowth, which are undesirable for the use of primary sensory neurons in cell culture. Thus, to preserve neuron survival in vitro while inhibiting cell differentiation, NGF is added to the cell culture media along with a bicyclic peptide. For addition to the cell culture, the bicyclic peptide is first combined with a carrier which will not adversely affect the growth of the cells in culture. Such carriers will include, for example, physiologically acceptable fluids such as water or any other fluid suitable for addition to the cell culture. Alternatively, the peptide can be combined with media suitable for culturing neuronal cells prior to being added to the cell culture. To be effective to prevent neuron differentiation, the concentration of the peptide in the cell culture will be in the range of from about 1-500 μM, and preferably from about 1-100 μM. The optimal concentration of bicyclic peptide for use in preventing neuron differentiation in cell culture will, of course, vary in each independent case, and will depend on the extent of inhibition desired as well as the type of neuronal cells involved.
Compositions for in vivo administration, e.g. for treating neurological conditions such as epilepsy or Alzheimer's disease, are also contemplated. Such compositions comprise a therapeutically effective amount of a bicyclic peptide
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SUBSTITUTE SHEET
together with a pharmaceutically acceptable carrier. In this context, the term "pharmaceutically acceptable" means acceptable for use in the pharmaceutical and veterinary arts, i.e. non-toxic and not adversely affecting the activity of the bicyclic peptide. The term "therapeutically effective amount" means an amount of the compound sufficient to reduce undesirable neurotrophin-mediated activity, as determined using assays of conventional design such as the assays described herein in the specific examples, in an inflicted individual without causing adverse effects.
Pharmaceutically acceptable carriers useful to prepare compositions for in vivo administration include conventional carriers generally selected for combination with peptide-based drugs such as diluents, excipients and the like. Reference may be made to "Remington's Pharmaceutical Sciences", 17th Ed. , Mack Publishing Company, Easton, Penn., 1985, for guidance on drug formulations generally. As will be appreciated, the pharmaceutical carriers used to prepare compositions in accordance with the present invention will depend on the administrable form to be used to treat the inflicted individual.
According to one embodiment of the invention, the compounds are formulated for administration by injection intraventricularly, and are accordingly provided as aqueous solutions in sterile and pyrogen-free form and optionally buffered or made isotonic. Thus, the compounds may be administered in distilled water or, more desirably, in saline or 5% dextrose solution. Water solubility of these and other compounds of the invention may be enhanced, if desired, by incoφorating into the composition a solubility enhancer, such as cetyltrimethylammonium bromide or chloride. Lyoprotectants, such as mannitol, sucrose or lactose and buffer systems, such as acetate, citrate and phosphate may also be included in the formulation, as may bulking agents such as serum albumin.
Alternatively, the compounds of the present invention may be formulated for administration by routes other than injection. For example, oral dosage forms, such as tablets, capsules and the like, formulated in accordance with standard
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SUBSTITUTE SHEET
pharmaceutical practise, may be employed.
For use in treating individuals with a neurological condition, precise dosage sizes of a pharmaceutical composition appropriate for treatment can readily be established in appropriately controlled trials, and will correspond to an amount of bicyclic peptide that reduces undesirable neurotrophin-mediated activity without causing intolerable side effects to the individual being treated. It is anticipated that an effective treatment regimen for patients will involve the intraventricular administration of dosages which achieve a level of peptide in the spinal fluid of the individual being treated of about 1-500 μM. It will be appreciated, of course, that the dosage sizes required to attain this in vivo concentration will vary according to the route of administration, the frequency of administration, on the individual being treated and on the neurological condition being treated.
Specific embodiments of the present invention are described in more detail in the following examples which are not to be construed as limiting.
Example 1 - Synthesis of NGF Bicyclic Peptide
The bicyclic peptide illustrated in Fig. 2 was prepared by first synthesizing the linear form thereof using the solid phase synthesis method. An automated synthesizer, e.g. Applied Biosystems 430A, was used with a Wang resin (available from NovaBiochem). All amino acid side chains were protected with Mtr (4- methoxy-2,3,6-trimethyl-benzene-sulfonyl) groups, with the exception of the cysteines from positions 58 and 108 which were protected with ACM (acetamidomethyl) groups. A TFA-cleavage (1-2 hrs) from the resin yielded the linear peptide retaining only the ACM protecting groups.
To cyclize the peptide, the two free thiol groups at positions 68 and 110 were then covalently linked. The peptide was dissolved in 0.1 M ammonium bicarbonate buffer, pH 8.3, at a concentration of 0.1 mg/mL. The reaction mixture was stirred at room temperature, and the progression of the reaction was monitored by HPLC. The HPLC solvent, comprising solvent A of water with 0.1 % TFA and solvent B of
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B TITUTE SHEET
acetonitrile with 0.1 % TFA, was run on a gradient from solvent A to solvent B at 1 % per minute. On completion of the reaction, the mono-cyclized product was isolated by lyophilization and purified by HPLC.
The mono-cyclized product (0.1 mmol) was then cyclized at the ACM protected sites. The product was dissolved in 1.5 mL of methanol. This solution was added dropwise to 2.5 mL of methanol containing 63.5 mg of iodine over 30 minutes with stirring at room temperature. The stirring was continued (approx. 3 hrs) while the progression of the reaction was determined using HPLC. Upon completion of the cyclization, the reaction was quenched by the addition of solid zinc powder (1-2 mg). The mixture was diluted with 10 mL of water, filtered and lyophilized. The bicyclic product was purified using HPLC, and its structure was confirmed by standard methods.
Example 2 - Affinity Cross-Linking Experiments
The ability of the peptides derived from the 68-58/108-110 region of NGF to antagonize NGF interaction with the p75 and trkA receptors was determined. The peptides tested were bicyclic (BC) 68-58/108-110, cyclic (C) 68-58/108-110, and linear (L) 68-58/108-110, each of which are illustrated in Figure 2.
PC12 rat pheochromocytoma cells (ATCC CRL 1721) were independently incubated in RPMI (GIBCO)/ 10% fetal calf serum (GIBCO) with 20 μM and 200 μM solutions of NGF peptide, prepared as described in detail in Example 1, in the presence of 125I-NGF (isolated from mouse submaxillary gland as described in Mobley et al., 1976, Biochemistry, 15:1543) for 2 hours at 4°C. Control PC12 cells were incubated in RPMI/ 10% fetal calf serum in the presence of 125I-NGF only (no NGF peptide).
For trkA cross-linking, bis-(sulfosuccinimidyl)suberate (Pierce) was added to the incubation mixture to a final concentration of 0.4 mM (in 20 μl), and incubated for 20 min at 25 °C. For cross-linking to p75NGFR, N-hydroxysuIfosuccinimide (Pierce) was added to the incubation mixture to a final concentration of 2 mM and 1-
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SUBSTITUTE SHEET
ethyl-3-(3-dimethylaminopropyl)carbodiimide (Pierce) was added to a final concentration of 5 mM (in 20 μl), and incubated for 30 min at 25°C. On completion of the cross-linking reaction, the cells were washed three times in HKR buffer (Gibco) with BSA at 4°C to remove excess free radiolabelled ligand and reagents.
The cells were solubilized in 1 ml of lysis buffer containing 10 mM tris-HCl, pH 7.4, 150 mM NaCl, 10% glycerol, 1 % NP-40, 0.01 mg/ml aprotinin, 0.5 mM orthovanadate, 0.5 μl/ml leupeptin, and 2 mM phenyl-methyl-sulfonylfluoride at 4 °C for 15 min. Cellular debris was removed by centrifugation. TrkA antibody (supplied by W. Mobley, University of California, San Francisco) or p75 antibody (supplied by E. Shooter, Stanford U. , California) were added to the supernatant to a final concentration of 20 μg/ml, and incubated at 4°C for 2 hrs. with constant mixing. Protein A Sepharose (Sigma) pre-equilibrated in lysis buffer was added (50 μl of a 50% solution) to the TrkA sample and incubated at 4 °C for 2 hrs. For the p75 sample, pre-equilibrated goat anti-mouse agarose (Sigma) was added (50 μl of a 50% solution) and incubated.
The immunoprecipitated proteins were then washed with lysis buffer and eluted from the affinity gels using reducing SDS sample buffer, and solubilized in the reducing buffer for 10 min at 95 °C. Samples were separated on a modified Laemmli discontinuous acrylamide gel system (Laemmli, Nature, 1970, 227:680) using 4% SDS PAGE staking gel and a gradient urea polyacrylamide separating gel ranging from 4.5% acrylamide/18% urea to 7.5% acrylamide/48 % urea. The gels were fixed and processed for autoradiography using -70°C exposure with Kodak XAR film and manual processing.
The following results were obtained by observing the density of bands (the less the density, the greater the antagonism) appearing on the autoradiograms:
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SUBSTITUTE SHEET
2 " + + " indicates greater than 50% inhibition
Thus, as can be seen from the tabulated results, only the bicyclic peptide was capable of inhibiting NGF interaction at the p75 and TrkA receptors.
Example 3 - Inhibition of Neurite Outgrowth
Eight-day chick embryo dorsal root ganglia (DRG) were freed of meninges and removed aseptically. The DRG were kept at 4°C at all times. Ganglia from six embryos (40-50 per embryo) were washed in Ca2+- and Mg2+- free Gey's balanced salt solution (Gibco) and exposed to 0.01 % trypsin (Worthington) in the same solution for 10 min at 37°C. A half-volume of phosphate-buffered Gey's balanced salt solution was added for a further 5 min at 37 °C and the reaction was then stopped with one-third volume of Ham's F12 medium (Gibco) containing 5% fetal calf serum (Gibco). The ganglia were then triturated using a 5 mL narrow-tip pipette to a single cell suspension. Following filtration through 37-μm nylon mesh (Small Parts Inc., Miami, FL) in a millipore chamber to remove clumps, the cell suspension was washed through a 500-μl FCS undercut (700 x g for 5 min at 4° C) and resuspended in 4 mL of Ham's F12 medium plus 5% FCS. The cell suspension was then preplated on a 100-mm Flacon culture dish and incubated for 45-60 min at 37°C in a 5 % CO2 humidified atmosphere. Cells enriched in neurons were decanted for the bioassay, since non-neuronal cells of DRG preferentially stick to the culture substrate.
The inside wells of 96-well Falcon microculture plates were coated with polylysine (0.1 mg/mL) (Sigma) for 4 h at 37°C (the outside wells were filled with distilled water to provide humidity) and, following a rinse with tissue culture media, 100 μL of neuron-rich cell suspension was added to each well at 105 cells/mL.
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Ninety (90) μL of NGF solution (prepared in tissue culture media) was then added to each well to a final concentration of 0.25 ng/mL NGF per well. Ten (10) μL of bicyclic 68-58/108-110 peptide solution, i.e. tissue culture media admixed with bicyclic peptide prepared as described in Example 1, was then added to test wells in duplicate to yield wells containing 0 μM, 25 μM, 100 μM and 250 μM peptide. For control assays, 10 μL of Ham's F12 medium was added to duplicate NGF-containing wells. The plates were covered and incubated in the dark for 24-30 hrs. at 37°C in a 5 % CO2 humidified atmosphere.
The bioassays were read using a Leitz Diavert microscope with phase optics. To afford adequate optics, the meniscus effect of each well was removed by filling the well with a balanced salt solution until a flat, air-filled interface was achieved at the top of the well. At least 100 neurons per well were counted, and the assay was scored as the ratio of cells bearing neurites greater than one cell diameter to total viable (phase-bright) cells.
The results of this assay are illustrated in Fig. 3. In this experiment the IC*,, i.e. the concentration of bicyclic peptide required to inhibit neurite growth on 50% of the cells, was calculated to be 250 μM.
Example 4 - Effect of Peptide on Neuron Survival
Cells enriched for sensory neurons were prepared from ED8 chick DRG as described above. The cells were plated at a density of 800-1000 cells per well in Terasaki plates treated with poly-D-lysine and laminin in tissue culture medium containing 1 ng/ml NGF and 68-58/108-110 depsibicyclic peptide in the amounts shown below. Following a 20-22 hr. incubation at 37°C, 5% CO2, the cells were fixed in 4% formaldehyde in PBS and cells on the tissue culture surface were counted as a percentage of total cells.
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Additives % Viable Cells
0 78.2 ± 1.1 methanol (1.8%)' 66.3 ±5.0 peptide (5 nM) 70.4 ±3.4 peptide (50 nM) 67.2 ± 1.2 peptide (500 nM) 86.5 ±4.6 peptide (5 μM) 79.5 ±2.4 peptide (20 μM)2 79.5 ± 1.4 highest final concentration used as a vehicle for peptide This concentration is twice the ICJO for neurite growth inhibition.
As can be seen from the results of this assay, the depsibicyclic peptide had no significant effect on NGF-mediated survival at the concentrations tested.
Example 5 - Effect of Neurotrophin-Derived Peptide on Kindling
Kindling is a phenomenon in which repeated low-intensity (subconvulsive) electrical stimulation of forebrain areas leads to a progressive and permanent amplification of seizure activity, and is thus, widely accepted as a model for human temporal lobe epilepsy. The effect of the present neurotrophin-derived peptides on kindling was determined as follows.
Male Long-Evans hooded rats (300-400 g) were used. The animals were housed individually, maintained on an ad lib feeding schedule and kept on a 12 h on/ 12 h off light cycle.
The rats were anesthetised with 0.1 ml per 100 g body weight of 100 mg/ml ketamine hydrochloride (Rogar/STB Inc., London, Canada) and 0.05 ml per 100 g body weight of 20 mg/ml xylocaine 2% hydrochloride (Astra, Mississauga, Canada), and then placed in a stereotaxic holder. The rats were implanted unilaterally with a bipolar twisted, teflon-coated, stainless steel electrode with an exposed tip (wire diameter 190 μm) in the right amygdala at stereotaxic coordinates of 3.3 mm caudal and 8.0 mm lateral to bregma and 8.5 mm ventral to the brain surface (selected from Paxinos and Watson, 1982, "The rat brain in stereotaxic coordinates", Academic
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Press, Sydney). Following implantation of the electrode, a cannula (Alzet brain infusion kit, Alza Coφ.) was implanted in the lateral ventricle, 5 mm below the skull surface, at 0.6 mm caudal to bregma and 1.3 mm lateral to the midline. It was firmly attached to the skull with dental cement and anchored with three stainless steel screws. An osmotic pump (Alzet model 2002, flow speed 0.5 μl/h, effective maximally for 14 days) was connected to the cannula via polyethylene tubing and placed subcutaneously in the neck area. Histological examination of lateral ventricle sections was done to confirm that the cannula was correctly placed. Forty-five (45) μM of peptide, in a physiologically acceptable buffer, was delivered throughout the duration of the experiment to each test animal. There were five groups of test animals, 5 animals per peptide test group, 10 animals in the negative control group and 12 animals in the positive control group. Each test group was administered one peptide selected from the linear, cyclic and bicyclic 68-58/108-110 peptides. The negative control group was infused with control serum IgGs, and the positive control group was infused with 100 μg/day of anti-NGF antibody. The anti-NGF antibody was obtained from sheep immunized with 0.5 mg of 2.5S NGF (prepared from male mouse salivary glands according to the method of Mobley et al. , supra) intradermally in complete Freund's adjuvant initially, and in incomplete adjuvant every 4 weeks thereafter. Blood was collected 10 days after each booster injection. Serum was prepared by clotting the blood at room temperature followed by centrifugation at 1,500 g for 30 min., heat inactivation at 56°C for 30 min. and sterilization using 0.22 μm filters (Nalgene). IgG was purified from serum by differential precipitation using caprilic acid followed by ammonium sulfate (McKinney and Parkinson, 1987, J. Immunol. Methods, 96:271). NGF-specific antibody was further purified using affinity chromatography on 2.5S NGF coupled to CN-Br sepharose 4B (Pharmacia).
Following a three-day recovery, the kindling stimulations were started. The animals received a one-second train of one-millisecond pulses at a frequency of 60 Hz and a pulse intensity of 200-400 μA. These pulses were sufficient to trigger an epileptiform afterdischarge (AD) following each stimulation. Each animal was stimulated in this fashion twice a day over a period of 11 days. Progression of kindling was monitored behaviorally and electrophysiologically by recording the
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behavioral seizure stages and the duration and magnitude of afterdischarges. Fully kindled animals exhibited three consecutive stage-5 seizures (Racine, 1972, Electroencephalogr. Clin. Neurophysiol., 32:281).
The number of stimulations to reach stage-5 seizures for control rats and rats receiving the linear, cyclic and bicyclic peptides is illustrated graphically in Fig. 4. The results illustrate that the bicyclic peptide has a potency which is approximately equal to that of the anti-NGF IgG in delaying the onset of kindling in comparison to the control serum IgG, linear peptide and cyclic peptide.
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SEQUENCE LISTING
(1) GENERAL INFORMATION:
(i) APPLICANT: Riopelle, Richard J. (ii) TITLE OF INVENTION: NEUROTROPHIN ANTAGONISTS (iii) NUMBER OF SEQUENCES: 7
(iv) CORRESPONDENCE ADDRESS:
(A) ADDRESSEE: Ridout & Maybee
(B) STREET: 2300 Richmond-Adelaide Centre, 101 Richmond
Street West
(C) CITY: Toronto
(D) STATE: Ontario
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(F) ZIP: M5H 2J7
(v) COMPUTER READABLE FORM:
(A) MEDIUM TYPE: Floppy disk
(B) COMPUTER: IBM PC compatible
(C) OPERATING SYSTEM: PC-DOS/MS-DOS
(D) SOFTWARE: Patentin Release #1.0, Version #1.25
(vi) CURRENT APPLICATION DATA:
(A) APPLICATION NUMBER:
(B) FILING DATE:
(C) CLASSIFICATION:
(ix) TELECOMMUNICATION INFORMATION:
(A) TELEPHONE: (416) 868-1482
(B) TELEFAX: (416) 362-0823
(2) INFORMATION FOR SEQ ID NO:l:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 6 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide (v) FRAGMENT TYPE: internal
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 1
(D) OTHER INFORMATION: /note= "Xaa at pos .1 is Cys, desamino Cys or N-terminally blocked Cys"
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 2
(D) OTHER INFORMATION: /note= "Xaa at pos .2 represents from 1-10 amino acid residues"
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SUBSTITUTE SHEET
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 6
(D) OTHER INFORMATION: /note= "Xaa at pos. 6 is Cys, decarboxylated Cys or N-terminally blocked Cys"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:l:
Xaa Xaa Cys Cys Val Xaa 1 5
(2) INFORMATION FOR SEQ ID NO:2:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 14 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 4
(D) OTHER INFORMATION: /note= "Xaa at pos.4 is an acidic amino acid"
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 1
(D) OTHER INFORMATION: /note= "Xaa at pos.1 is Cys, desamino Cys or N-terminally blocked Cys"
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 8
(D) OTHER INFORMATION: /note= "Xaa at pos.8 is a non-polar amino acid or an uncharged polar amino acid"
(ix) FEATURE:
(A) NAME/KEY: Modified-site
(B) LOCATION: 9
(D) OTHER INFORMATION: /note= "Xaa at pos .9 is an acidic amino acid or a non-polar amino acid"
( ix ) FEATURE :
(A) NAME/KEY : Modif ied- site
(B) LOCATION: 14
(D) OTHER INFORMATION: /note= "Xaa at pos.14 is Cys, descarboxylated Cys or a C-terminally blocked Cys"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:2:
Xaa Gly Ser Xaa Val Pro Asn Xaa Xaa Arg Cys Cys Val Xaa 1 5 10
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( 2 ) INFORMATION FOR SEQ ID NO : 3 :
( i ) SEQUENCE CHARACTERISTICS :
( A) LENGTH : 14 amino acids
( B ) TYPE : amino ac id
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide (v) FRAGMENT TYPE: internal
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3 :
Cys Gly Ser Glu Val Pro Asn Ser Ala Arg Cys Cys Val Cys 1 5 10
(2) INFORMATION FOR SEQ ID NO:4:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 14 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide (v) FRAGMENT TYPE: internal
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:4:
Cys Gly Ser Asp Val Pro Asn Pro Asp Arg Cys Cys Val Cys
1 5 10
(2) INFORMATION FOR SEQ ID NO:5:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 14 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide (v) FRAGMENT TYPE: internal
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5:
Cys Gly Glu Lys Thr Tyr Cys Met Pro Asn Cys Cys Val Cys 1 5 10
(2) INFORMATION FOR SEQ ID NO:6:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 14 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide (v) FRAGMENT TYPE: internal
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(xi) SEQUENCE DESCRIPTION: SEQ ID NθQ&:
Cys Gly Glu Lys Thr Tyr Gly Met Pro Asn Cys Cys Val Cys 1 5 10
(2) INFORMATION FOR SEQ ID NO:7 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 14 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:7:
Cys Gly Asn Lys Val Pro Arg Ala Glu Lys Cys Cys Val Cys 1 5 10
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