WO1998005770A2 - Anti-sinn-rna mit sekundärstruktur - Google Patents
Anti-sinn-rna mit sekundärstruktur Download PDFInfo
- Publication number
- WO1998005770A2 WO1998005770A2 PCT/DE1997/001691 DE9701691W WO9805770A2 WO 1998005770 A2 WO1998005770 A2 WO 1998005770A2 DE 9701691 W DE9701691 W DE 9701691W WO 9805770 A2 WO9805770 A2 WO 9805770A2
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- sense rna
- expression
- vector
- secondary structure
- pj3ω
- Prior art date
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
- C12N15/1137—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against enzymes
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y203/00—Acyltransferases (2.3)
- C12Y203/01—Acyltransferases (2.3) transferring groups other than amino-acyl groups (2.3.1)
- C12Y203/01028—Chloramphenicol O-acetyltransferase (2.3.1.28)
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/11—Antisense
- C12N2310/111—Antisense spanning the whole gene, or a large part of it
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/50—Physical structure
- C12N2310/53—Physical structure partially self-complementary or closed
Definitions
- the present invention relates to an anti-sense RNA with a secondary structure, a combination containing it and the use of both.
- New techniques for inhibiting gene expression often involve the use of anti-sense RNA.
- This is an RNA that is complementary to and binds to regions of the mRNA of a gene.
- a duplex molecule is formed that is not translated by the mRNA. An inhibition of gene expression can thus be achieved.
- duplex molecule is often not stable, i.e. the mRNA becomes free for translation again, whereby the inhibition of gene expression is weak or does not occur at all.
- the present invention is therefore based on the object of providing a means with which a strong inhibition of gene expression can be achieved.
- anti-sense RNA encompasses any RNA molecule which is suitable as anti-sense RNA, ie is complementary to regions of an RNA, in particular mRNA and very particularly regulatory elements thereof, and by binding to these regions inhibits the Gene expression.
- the anti-sense RNA can also include DNA sequences.
- the anti-sense RNA can be present as such or in the form of a vector encoding it. Such a vector can be a common expression vector. It can be favorable if the expression of the sequence coding for the anti-sense RNA is under the control of a constitutive or inducible promoter, such as a tissue- or tumor-specific promoter.
- secondary structure encompasses any DNA and / or RNA sequence which can be present in an anti-sense RNA and which has an at least partially “hairpin” structure, ie individual base pairs are subject to refolding.
- the secondary structure can exist within the anti-sense RNA. It can also be present at the 5 'and / or 3' end of the anti-sense RNA. If there are several secondary structures, these can be the same or different from one another.
- Complicated palindromes such as (AGCT) n or (GAATTC) n are also preferred.
- An anti-sense RNA according to the invention can be produced by customary methods. It is favorable to produce a double-stranded (GC) 20 EcoRI (GC) 20 sequence by oligonucleotide synthesis and to ligate this to the 5 'end of the cDNA sequence of a gene to be inhibited. The DNA molecule obtained is ligated in the 3 ' ⁇ 5' direction to the promoter of a vector. The vector obtained leads to the expression of the anti-sense RNA according to the invention.
- GC double-stranded
- EcoRI GC
- An anti-sense RNA according to the invention can be introduced into cells as such or in the form of a vector encoding it.
- the cells can be any cells, such as plant and animal, especially mammalian and very particularly human cells.
- the cells can be inside or outside of an organism. The latter can be freshly isolated or kept in culture.
- the anti-sense RNA can be introduced into the cells by conventional transfection techniques, such as electroporation.
- Another object of the present invention is a combination of an anti-sense RNA according to the invention and a (ds) RNAse. This is an RNAse that can recognize and break down double-stranded RNA.
- a (ds) RNAse is found, for example, in the yeast strain Schizosaccharomyces pombe (pad +).
- the anti-sense RNA according to the invention can be present as such or in the form of a vector encoding it.
- the (ds) RNAse can be present as such or in the form of a vector encoding it.
- a vector can be a common expression vector. It can be advantageous if the expression of the sequence coding for the (ds) RNAse is under the control of a constitutive or inducible promoter, such as a tissue- or tumor-specific one
- the combination consists in the presence of a vector which codes both for the anti-sense RNA according to the invention and for the (ds) RNAse.
- vector With regard to the vector, reference is made to the above statements.
- the combination of an anti-sense RNA according to the invention and a (ds) RNAse can be introduced into cells.
- the (ds) RNAse as such, i.e. as a protein, by conventional methods such as lipofection.
- the form of a vector encoding it the
- RNAse can be introduced by methods as they were called for the anti-sense RNA.
- the present invention provides an anti-sense RNA and a combination containing it which cause potent inhibition of gene expression.
- the present invention is thus widely used in molecular biology and medicine.
- diseases in which individual proteins trigger or reinforce are, for example, diseases in which hormones play a major role, tumor diseases and viral infections, such as HIV and AIDS.
- diseases in which hormones play a major role are, for example, diseases in which hormones play a major role, tumor diseases and viral infections, such as HIV and AIDS.
- FIG. 1 shows the inhibition of gene expression by an anti-sense RNA according to the invention.
- (1) is the rate of expression of the CAT gene in the presence of an anti-sense RNA.
- (2) is the expression rate of the
- CAT gene in the presence of an anti-sense RNA with secondary structure I.
- (3) is the expression rate of the CAT gene in the presence of an anti-sense RNA with secondary structure II.
- FIG. 2 shows the inhibition of gene expression by an anti-sense RNA according to the invention.
- (1) is the rate of expression of the CAT gene in the presence of an anti-sense RNA with secondary structure I.
- (2) is the rate of expression of the CAT gene in the presence of an anti-sense RNA with secondary structure I and a (ds) RNAse.
- Example 1 Production of expression vectors which contain the chioramphenicolacetyl transferase (CAT) gene in the 5 ' ⁇ 3' or 3 ' ⁇ 5' direction.
- CAT chioramphenicolacetyl transferase
- the CAT gene was isolated from a conventional CAT vector and inserted into the "multiple cloning site" of the expression vector pJ3 ⁇ (cf. Nuclear acids res. 1 8, (1 990), 1068). In one case the insertion was in the 5 ' ⁇ 3' direction and the expression vector pJ3 ⁇ -CAT was obtained. In the other case, the insertion was carried out in the 3 '- * 5' direction and the expression vector pJ3 ⁇ -TAC was obtained.
- Example 2 Production of expression vectors which contain the CAT gene in the 3 ' ⁇ 5' direction and a sequence coding for a secondary structure I or II.
- AATTC- (GO 20-GAATTC- (GC) 20-GAATTC- (GC) 0-G.
- Cloning vector pBluescript (Stratagene) was used, from which it could be removed by suitable restriction enzymes for recloning into the vector which has the CAT gene in the 3 '- * 5' direction.
- the vector pJ3 ⁇ -TAC from Example 1 was cut in the "multiple cloning site" between the promoter and the TAC insert with suitable restriction enzymes.
- Sequence was taken from the pBluescript vector of Example 2 (e) with the appropriate enzymes. The two nucleic acids were linked by ligation.
- Example 3 Preparation of an expression vector which codes for a (ds) RNAse.
- the gene (pad +) coding for a (ds) RNAse was isolated from a conventional genomic library of Schizosaccharomyces pombe by means of PCR amplification. For this purpose, primers were used which had been derived from the known sequence of the pad + gene (cf. database: embl: S78982). The pad + gene was cloned in the known vector pBluescript and confirmed by sequencing. After cloning into the usual expression vector pcDNA3 (InVitrogen), the expression vector pcDNA3-pad + was obtained.
- Example 4 Inhibition of gene expression by an anti-sense RNA with a secondary structure
- Ehrlich ascites tumor cells (10 7 cells / ml) were expressed with the expression vectors pJ3 ⁇ -CAT, pJ3 ⁇ -TAC, pJ3 ⁇ -TAC-sec. I or pJ3 ⁇ -TAC-sec. II transfected (see Table 1).
- RNAse activity is produced or generated by means of the described methods.
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- Life Sciences & Earth Sciences (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Biomedical Technology (AREA)
- Organic Chemistry (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Microbiology (AREA)
- Virology (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
- Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Abstract
Description
Claims
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP97936610A EP0918853A2 (de) | 1996-08-07 | 1997-08-05 | Anti-sinn-rna mit sekundärstruktur |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| DE19631919.6 | 1996-08-07 | ||
| DE1996131919 DE19631919C2 (de) | 1996-08-07 | 1996-08-07 | Anti-Sinn-RNA mit Sekundärstruktur |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO1998005770A2 true WO1998005770A2 (de) | 1998-02-12 |
| WO1998005770A3 WO1998005770A3 (de) | 1998-03-26 |
Family
ID=7802056
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/DE1997/001691 WO1998005770A2 (de) | 1996-08-07 | 1997-08-05 | Anti-sinn-rna mit sekundärstruktur |
Country Status (3)
| Country | Link |
|---|---|
| EP (1) | EP0918853A2 (de) |
| DE (1) | DE19631919C2 (de) |
| WO (1) | WO1998005770A2 (de) |
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| WO1999053050A1 (en) * | 1998-04-08 | 1999-10-21 | Commonwealth Scientific And Industrial Research Organisation | Methods and means for obtaining modified phenotypes |
| WO2000044895A1 (de) * | 1999-01-30 | 2000-08-03 | Roland Kreutzer | Verfahren und medikament zur hemmung der expression eines vorgegebenen gens |
| WO2000063364A2 (en) | 1999-04-21 | 2000-10-26 | American Home Products Corporation | Methods and compositions for inhibiting the function of polynucleotide sequences |
| WO2001036646A1 (en) * | 1999-11-19 | 2001-05-25 | Cancer Research Ventures Limited | Inhibiting gene expression with dsrna |
| WO2003035868A1 (de) * | 2001-10-26 | 2003-05-01 | Ribopharma Ag | Medikament zur erhöhung der wirksamkeit eines rezeptor-vermittelt apoptose in tumorzellen auslösenden arzeimittels |
| WO2002055692A3 (de) * | 2001-01-09 | 2003-06-12 | Ribopharma Ag | Verfahren zur hemmung der expression eines zielgens und medikament zur therapie einer tumorerkrankung |
| WO2002055693A3 (de) * | 2001-01-09 | 2003-07-17 | Ribopharma Ag | Verfahren zur hemmung der expression eines zielgens |
| EP1445321A1 (de) | 2002-12-18 | 2004-08-11 | Monsanto Technology LLC | Embryo-spezifischer Promoter aus Mais und dessen Verwendung |
| WO2005110068A2 (en) | 2004-04-09 | 2005-11-24 | Monsanto Technology Llc | Compositions and methods for control of insect infestations in plants |
| EP1621632A1 (de) | 2004-07-31 | 2006-02-01 | Monsanto Technology, LLC | Gene und ihre Verwendung zur Pflanzenverbesserung |
| EP1575977A4 (de) * | 2002-12-23 | 2006-04-26 | Dynavax Tech Corp | Oligonukleotide mit einer immunsystemstimulierenden sequenz und verfahren zu deren anwendung |
| US7067722B2 (en) | 1999-08-26 | 2006-06-27 | Monsanto Technology Llc | Nucleic acid sequences and methods of use for the production of plants with modified polyunsaturated fatty acids |
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| WO2006133983A1 (en) | 2005-04-19 | 2006-12-21 | Basf Plant Science Gmbh | Starchy-endosperm and/or germinating embryo-specific expression in mono-cotyledonous plants |
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| WO2007095469A2 (en) | 2006-02-10 | 2007-08-23 | Monsanto Technology Llc | Identification and use of target genes for control of plant parasitic nematodes |
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| US7423142B2 (en) | 2001-01-09 | 2008-09-09 | Alnylam Pharmaceuticals, Inc. | Compositions and methods for inhibiting expression of anti-apoptotic genes |
| US7452987B2 (en) | 2002-08-05 | 2008-11-18 | Silence Therapeutics Aktiengesellschaft (Ag) | Interfering RNA molecules |
| US7531718B2 (en) | 1999-08-26 | 2009-05-12 | Monsanto Technology, L.L.C. | Nucleic acid sequences and methods of use for the production of plants with modified polyunsaturated fatty acids |
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| US7612194B2 (en) | 2001-07-24 | 2009-11-03 | Monsanto Technology Llc | Nucleic acid sequences from Diabrotica virgifera virgifera LeConte and uses thereof |
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| EP2270181A2 (de) | 2005-09-16 | 2011-01-05 | deVGen N.V. | DSRNA als Bekämpfungsmittel gegen Insekten |
| EP2275562A2 (de) | 2005-09-16 | 2011-01-19 | deVGen N.V. | Verfahren auf Basis von transgenen Pflanzen zur Bekämpfung von Schadinsekten unter Verwendung von RNAi |
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Families Citing this family (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2361201A1 (en) | 1999-01-28 | 2000-08-03 | Medical College Of Georgia Research Institute, Inc. | Composition and method for in vivo and in vitro attenuation of gene expression using double stranded rna |
| CA2369944A1 (en) | 2001-01-31 | 2002-07-31 | Nucleonics Inc. | Use of post-transcriptional gene silencing for identifying nucleic acid sequences that modulate the function of a cell |
Family Cites Families (6)
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|---|---|---|---|---|
| FR2675803B1 (fr) * | 1991-04-25 | 1996-09-06 | Genset Sa | Oligonucleotides fermes, antisens et sens et leurs applications. |
| DK0592685T3 (da) * | 1992-04-17 | 2002-02-11 | Kirin Brewery | Plante, som er resistent over for to eller flere vira, og fremstilling deraf |
| NZ255028A (en) * | 1992-07-02 | 1997-03-24 | Hybridon Inc | Antisense oligonucleotides resistant to nucleolytic degradation |
| GB2273932A (en) * | 1992-11-24 | 1994-07-06 | Stiefel Laboratories | Stable oligonucleotides |
| FR2703053B1 (fr) * | 1993-03-26 | 1995-06-16 | Genset Sa | Oligonucleotides agrafes et semi-agrafes, procede de preparation et applications . |
| US5624803A (en) * | 1993-10-14 | 1997-04-29 | The Regents Of The University Of California | In vivo oligonucleotide generator, and methods of testing the binding affinity of triplex forming oligonucleotides derived therefrom |
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1996
- 1996-08-07 DE DE1996131919 patent/DE19631919C2/de not_active Expired - Fee Related
-
1997
- 1997-08-05 WO PCT/DE1997/001691 patent/WO1998005770A2/de not_active Application Discontinuation
- 1997-08-05 EP EP97936610A patent/EP0918853A2/de not_active Withdrawn
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| EP3354735A1 (de) | 2010-12-30 | 2018-08-01 | Dow AgroSciences LLC | Auf kleines rho1-gtp-bindendes protein abzielende und resistenz gegenüber coleopteran-schädlingen verleihende nukleinsäuremoleküle |
| EP3339440A1 (de) | 2010-12-30 | 2018-06-27 | Dow AgroSciences LLC | Auf die v-atpase-c-untereinheit gerichtete und resistenz gegenüber coleopteran-schädlingen verleihende nukleinsäuremoleküle |
| US9688983B2 (en) | 2012-12-20 | 2017-06-27 | Dow Agrosciences Llc | Nucleic acid molecules that confer resistance to coleopteran pests |
| EP2810952A1 (de) | 2013-06-03 | 2014-12-10 | Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. | Neuartige Schädlingsbekämpfungsverfahren |
| WO2015095750A1 (en) | 2013-12-20 | 2015-06-25 | Dow Agrosciences Llc | Rnapii-140 nucleic acid molecules that confer resistance to coleopteran pests |
| WO2015095774A1 (en) | 2013-12-20 | 2015-06-25 | Dow Agrosciences Llc | Ras opposite (rop) and related nucleic acid molecules that confer resistance to coleopteran and/or hemipteran pests |
| EP3719129A1 (de) | 2014-03-12 | 2020-10-07 | The University of Sydney | Rna-herstellung in höheren pflanzen |
| WO2015171784A1 (en) | 2014-05-07 | 2015-11-12 | Dow Agrosciences Llc | Dre4 nucleic acid molecules that confer resistance to coleopteran pests |
| EP3037432A1 (de) | 2014-12-22 | 2016-06-29 | Dow AgroSciences LLC | Nucampholin-nukleinsäure-moleküle zur bekämpfung von käferinsektenschädlingen |
| EP3067424A1 (de) | 2015-03-13 | 2016-09-14 | Dow AgroSciences LLC | Rna-polymerase-i1-nukleinsäuremoleküle zur kontrolle von insektenschädlingen |
| WO2016165729A1 (en) | 2015-04-13 | 2016-10-20 | Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. | Novel aflatoxin and fungal infection control methods |
| WO2016196247A1 (en) | 2015-05-29 | 2016-12-08 | Dow Agrosciences Llc | Spt5 nucleic acid molecules to control insect pests |
| US10344298B2 (en) | 2015-10-12 | 2019-07-09 | Dow Agrosciences Llc | WUPA nucleic acid molecules that confer resistance to coleopteran and hemipteran pests |
| US10329581B2 (en) | 2015-12-18 | 2019-06-25 | Dow Agrosciences Llc | Ribosomal protein L40 (RPL40) nucleic acid molecules that confer resistance to coleopteran and hemipteran pests |
| WO2018089237A1 (en) | 2016-11-10 | 2018-05-17 | Dow Agrosciences Llc | Cytochrome b (cytb) nucleic acid molecules that control pathogens |
| EP3342780A1 (de) | 2016-12-30 | 2018-07-04 | Dow AgroSciences LLC | Nukleinsäuremoleküle mit prä-mrna-verarbeitungsfaktor 8 (prp8) zur kontrolle von insektenschädlingen |
| WO2021099377A1 (en) | 2019-11-19 | 2021-05-27 | Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V. | Methods of multi-species insect pest control |
| EP3825408A1 (de) | 2019-11-19 | 2021-05-26 | FRAUNHOFER-GESELLSCHAFT zur Förderung der angewandten Forschung e.V. | Verfahren zur insektenschädlingsbekämpfung für mehrere arten |
Also Published As
| Publication number | Publication date |
|---|---|
| WO1998005770A3 (de) | 1998-03-26 |
| EP0918853A2 (de) | 1999-06-02 |
| DE19631919C2 (de) | 1998-07-16 |
| DE19631919A1 (de) | 1998-02-12 |
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