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WO2007035690A3 - Methods for diagnosing pancreatic cancer - Google Patents

Methods for diagnosing pancreatic cancer Download PDF

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Publication number
WO2007035690A3
WO2007035690A3 PCT/US2006/036388 US2006036388W WO2007035690A3 WO 2007035690 A3 WO2007035690 A3 WO 2007035690A3 US 2006036388 W US2006036388 W US 2006036388W WO 2007035690 A3 WO2007035690 A3 WO 2007035690A3
Authority
WO
WIPO (PCT)
Prior art keywords
biomarkers
origin
carcinomas
algorithm
carcinoma
Prior art date
Application number
PCT/US2006/036388
Other languages
French (fr)
Other versions
WO2007035690A2 (en
Inventor
Yixin Wang
Dimitri Talantov
Original Assignee
Veridex Llc
Yixin Wang
Dimitri Talantov
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Veridex Llc, Yixin Wang, Dimitri Talantov filed Critical Veridex Llc
Priority to JP2008531426A priority Critical patent/JP2009508493A/en
Priority to BRPI0616211-8A priority patent/BRPI0616211A2/en
Priority to CA002623425A priority patent/CA2623425A1/en
Priority to EP06814904A priority patent/EP1934378A4/en
Publication of WO2007035690A2 publication Critical patent/WO2007035690A2/en
Publication of WO2007035690A3 publication Critical patent/WO2007035690A3/en

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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/57484—Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumor, cancer, neoplasia, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides, metabolites
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
    • G01N33/5091—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing the pathological state of an organism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/112—Disease subtyping, staging or classification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/40—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for data related to laboratory analysis, e.g. patient specimen analysis
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Immunology (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Pathology (AREA)
  • Analytical Chemistry (AREA)
  • Biomedical Technology (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Cell Biology (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Hospice & Palliative Care (AREA)
  • Zoology (AREA)
  • General Physics & Mathematics (AREA)
  • Wood Science & Technology (AREA)
  • Oncology (AREA)
  • Genetics & Genomics (AREA)
  • Medicinal Chemistry (AREA)
  • Food Science & Technology (AREA)
  • Biophysics (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Physiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Biological Materials (AREA)

Abstract

The present invention provides a method of identifying origin of a metastasis of unknown origin by obtaining a sample containing metastatic cells; measuring Biomarkers associated with at least two different carcinomas; combining the data from the Biomarkers into an algorithm where the algorithm normalizes the Biomarkers against a reference; and imposes a cut-off which optimizes sensitivity and specificity of each Biomarker, weights the prevalence of the carcinomas and selects a tissue of origin determining origin based on highest probability determined by the algorithm or determining that the carcinoma is not derived from a particular set of carcinomas; and optionally measuring Biomarkers specific for one or more additional different carcinoma, and repeating the steps for additional Biomarkers.
PCT/US2006/036388 2005-09-19 2006-09-19 Methods for diagnosing pancreatic cancer WO2007035690A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
JP2008531426A JP2009508493A (en) 2005-09-19 2006-09-19 Methods for diagnosing pancreatic cancer
BRPI0616211-8A BRPI0616211A2 (en) 2005-09-19 2006-09-19 Methods for the diagnosis of pancreatic cancer
CA002623425A CA2623425A1 (en) 2005-09-19 2006-09-19 Methods for diagnosing pancreatic cancer
EP06814904A EP1934378A4 (en) 2005-09-19 2006-09-19 DIAGNOSTIC METHODS FOR PANCREATIC CANCER

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US71850105P 2005-09-19 2005-09-19
US60/718,501 2005-09-19
US72568005P 2005-10-12 2005-10-12
US60/725,680 2005-10-12

Publications (2)

Publication Number Publication Date
WO2007035690A2 WO2007035690A2 (en) 2007-03-29
WO2007035690A3 true WO2007035690A3 (en) 2007-06-14

Family

ID=37889439

Family Applications (2)

Application Number Title Priority Date Filing Date
PCT/US2006/036355 WO2007035676A2 (en) 2005-09-19 2006-09-19 Methods and materials for identifying the origin of a carcinoma of unknown primary origin
PCT/US2006/036388 WO2007035690A2 (en) 2005-09-19 2006-09-19 Methods for diagnosing pancreatic cancer

Family Applications Before (1)

Application Number Title Priority Date Filing Date
PCT/US2006/036355 WO2007035676A2 (en) 2005-09-19 2006-09-19 Methods and materials for identifying the origin of a carcinoma of unknown primary origin

Country Status (8)

Country Link
US (2) US20070065859A1 (en)
EP (3) EP2402758B1 (en)
JP (2) JP5405110B2 (en)
BR (2) BRPI0616211A2 (en)
CA (2) CA2623775A1 (en)
DK (2) DK2402758T3 (en)
ES (2) ES2525545T3 (en)
WO (2) WO2007035676A2 (en)

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Also Published As

Publication number Publication date
JP5405110B2 (en) 2014-02-05
JP2009508493A (en) 2009-03-05
EP2402758B1 (en) 2014-09-10
EP1934615B1 (en) 2014-06-04
CA2623775A1 (en) 2007-03-29
BRPI0616090A2 (en) 2011-06-07
ES2525545T3 (en) 2014-12-26
EP1934615A4 (en) 2009-02-11
HK1128524A1 (en) 2009-10-30
EP2402758A3 (en) 2012-10-31
WO2007035676A3 (en) 2007-12-27
US20080050726A1 (en) 2008-02-28
EP2402758A2 (en) 2012-01-04
US20070065859A1 (en) 2007-03-22
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BRPI0616211A2 (en) 2011-06-14
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