From: gerwald j. <ger...@br...> - 2005-05-26 14:24:47
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Hi everyone, maybe I should have looked in the archive more carefully... Yes, this is a nvidia quadro system, and yes, it's the 7174 drivers. I have downloaded the 0.99beta01 version, and it seems to be stable in the first few tests I've done. Thanks! Gerwald Stefano Trapani wrote: > Do you have nvidia drivers? > If so, may be you came across the same problem I have: > > I have installed the latest version of Mandriva Linux on a AMD > Athlon(tm) MP 2400+ PC with > a Quadro4 900 XGL graphich card and the NVIDIA-Linux-x86-1.0-7174 driver > > When I run pymol and load a pdb file, the program crashes with the > following message: > > CmdLoad: "GLGA/sup_models/pdb1rzu.ent" loaded as "pdb1rzu". > *** glibc detected *** double free or corruption (!prev): 0x08a76ba0 *** > /usr/local/pymol-0.98-precompiled/pymol.com: line 14: 16877 > Aborted (core dumped) $PYMOL_PATH/pymol.exe $* > > However, if I set auto_show_lines=off and auto_show_nonbonded=off > BEFORE loading the molecule, the program loads the PDB file without > crashing (and without showing any graphical object, of course). Then, > I can use the "show" command/button for any type of representation > (ribbons, nonbonded, sticks, ...) EXCEPT the "lines" representation, > which causes a program crash. > > This happens with both distributed binary and self compiled PyMol > versions. I have tried version 0.97 and 0.98 with the same results. > > Then, browsing the internet, I came across the following message from > Warren: > > http://sourceforge.net/mailarchive/message.php?msg_id=11735911 > > and I decided to try the 0_99beta01 version > (http://delsci.com/beta/pymol-0_99beta01-bin-linux-x86-nvidia-test.tgz), > which seems to solve my problem for the moment. > > > > gerwald jogl wrote: > >> Hi everyone, >> >> Just wanted to send in a description of the following situation: >> I was using pymol 0.98 precompiled on FC3 today and did an automatic >> update during the day (therefore, sorry but I don't know which >> packages where upgraded :-( >> Afterwards, pymol would start up, but core dump immediately after >> loading a pdb file. >> The same is happening with the 0.97 precompiled version and with my >> own compile of the 0.98 source code. >> This is what I get: >> /xsoft/pymol-0.97precompiled/pymol.com: line 14: 19692 Segmentation >> fault (core dumped) $PYMOL_PATH/pymol.exe $* >> >> or my compile: >> /xsoft/pymol-0.98/pymol.com: line 2: 19785 Segmentation fault >> (core dumped) /usr/bin/python >> /usr/lib/python2.3/site-packages/pymol/__init__.py $* >> >> >> Any comments on this would be greatly appreciated... >> Gerwald >> >> >> ------------------------------------------------------- >> SF.Net email is sponsored by: GoToMeeting - the easiest way to >> collaborate >> online with coworkers and clients while avoiding the high cost of >> travel and >> communications. There is no equipment to buy and you can meet as >> often as >> you want. Try it >> free.http://ads.osdn.com/?ad_id=7402&alloc_id=16135&op=click >> _______________________________________________ >> PyMOL-users mailing list >> PyM...@li... >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> > |