Re: [PyMOL] 3d pdf

Hi William,

In contrast to Nick, I read your question as inquiring after a 3D
probability density function. In case I get it wrong, just ignore this
mail.
It is well possible to generate 3D pdfs and display them in Pymol.
Actually, for one project I'm doing that right now. I have modified a
program from the Gromacs package to generate xplor density maps of
relative occupancies in space. Something similar may be of use to you.
If you want, I can send you the program, or a script which does a
similar thing. Alternatively, I can just send the routine to write an
xplor map, given a 3D array (C code, though maybe I already have it in
python too).

Hope it helps,

Tsjerk

On 5/21/07, William Scott <wg...@ch...> wrote:
> Is it possible to create a 3D pdf using pymol?
>
>
> William G. Scott
>
> Contact info:
> http://chemistry.ucsc.edu/~wgscott/
>
>
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623