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From: Richard G. <re...@co...> - 2007-05-22 14:31:02
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In the past I have used PyMol pretty successfully to visualize low- resolution x-ray solution scattering results in which each "atom" in a pdb file is actually a large sphere (say 4-6 Angstroms) representing some density. I would use >alter <molecule name>, vdw = 6.0 to set the sphere sizes appropriately, then compute a surface using the "surface" option in the "Show" pulldown of the appropriate object. Strangely, this seems to have quit working for me. When I select surface, nothing happens, not even an error message. It still works fine for older files I have, so it must be something particular about the geometry of the object I have (it is a rather sparse extended object). Anyone seen this kind of problem? File is included below: |