Re: [PyMOL] surfaces for molecules with non-standard VDW's

Hi Richard,

What about

set solvent_radius,3

That seems to do the trick for me.

Cheers,

Tsjerk

On 5/22/07, Richard Gillilan <re...@co...> wrote:
>
> In the past I have used PyMol pretty successfully to visualize low-
> resolution x-ray solution scattering results in which each "atom" in
> a pdb file is actually a large sphere (say 4-6 Angstroms)
> representing some density.  I would use
>
>  >alter <molecule name>, vdw = 6.0
>
> to set the sphere sizes appropriately, then compute a surface using
> the "surface" option in the "Show" pulldown of the appropriate object.
>
> Strangely, this seems to have quit working for me. When I select
> surface, nothing happens, not even an error message.
> It still works fine for older files I have, so it must be something
> particular about the geometry of the object I have (it is a rather
> sparse extended object). Anyone seen this kind of problem?
>
> File is included below:
>
>
>
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623