Re: [PyMOL] Sticks and distances with individual transparencies

Hi Mark,

You could've found this one in the archives of this list. Settings
work on objects, not on selections. The solution is to make an object
for the solid sticks and one for the transparent sticks, using create.

Cheers,

Tsjerk

On 6/26/07, Dr. Mark Mayer <ma...@ma...> wrote:
>
>
> Dear All,
>
>
> I'm trying to write a Pymol script with which produces a mixture of both
> solid and transparent sticks
> I'm using the current 1.0 incentive release of MacPymol. After drawing all
> my sticks I issue following commands, but nothing changes although the log
> output suggests the change is being set.
>
>
> PyMOL>set stick_transparency=0.2, /sca//A/228  and !mc
>  Setting: stick_transparency set for 5 atoms in object "mol1".
>
>  I'd also like to draw selected H-bonds with control of transparency
> with the rest solid, but have no idea how to do this.
>
>
> --
> Mark Mayer Ph.D.
>  LCMN NICHD NIH DHHS
>  Bldg 35, Room 3B 1002 MSC 3712
>  35 Lincoln Drive
>  Bethesda MD 20892 3712
>  Phone: 301-496-9346 (office); 301-496-9347 (lab); FAX 301-496-2396
>  Lab web site: http://mayerlab.nichd.nih.gov
>
>  Send packages, Fedex and anything requiring a signature to:
>
>  Bldg 35, Room 3B 1004
>  35 Lincoln Drive
>  Bethesda MD 20892
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623