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From: Andrew D. F. <fa...@po...> - 2007-08-31 21:55:01
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Is there an easy way to refer to/select a portion of a molecular
surface that is within a given distance of another molecule's surface?
I'm trying to generate some graphics for a presentation on a signaling
pathway, and I want to show just the part of each peptide's solvent
accessible surface that is making contact with the binding site.
Ideally, I would like to be able to color this, at least in a
contrasting color to the structures of the components, but preferably
tied to electrostatic potential or hydrophobicity. Has anyone ever
done this, and if so, can you spare any advice?
Thanks,
Andy
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