From: Buz B. <bu...@ma...> - 2008-01-30 19:41:30
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Hi All, Does anyone know of a script that is capable of displaying the surfaces identified by msms in pymol? It would be nice to have a program that could read in existing .vert and .face files. I've included small starting sections of these .face and .vert files as examples: # MSMS solvent excluded surface vertices for protein.xyzr #vertex #sphere density probe_r 282 1296 1.00 1.20 26.022 6.472 7.936 -0.226 0.027 -0.974 0 607 2 24.564 6.680 6.807 0.989 -0.147 -0.033 0 655 2 25.071 7.472 6.969 0.567 -0.807 -0.168 0 657 2 24.499 6.386 6.838 0.956 -0.293 -0.018 0 655 2 25.956 6.178 7.966 -0.259 -0.120 -0.958 0 607 2 25.398 5.470 7.845 0.206 0.471 -0.858 0 608 2 25.738 5.204 7.835 0.376 0.338 -0.863 0 608 2 # MSMS solvent excluded surface faces for protein.xyzr #faces #sphere density probe_r 560 1296 1.00 1.20 1 5 195 3 3 195 5 196 3 3 195 196 2 3 3 2 196 4 3 3 5 8 6 3 5 6 8 7 3 5 8 11 9 3 7 9 11 10 3 7 Thanks! and all the best, --Buz |