Re: [PyMOL] remove cartesian coordinate from w/in transparent metal ions

Hmmm.

I'm probably over-complicating matters, but:

def before_load():
    cmd.delete("all")

def after_load():
    cmd.as("cartoon")
    cmd.hide("nonbonded")

def wrapped_load(filename):
    before_load()
    cmd.load(filename)
    after_load()

cmd.extend("wrapped_load", wrapped_load)

gilleain

On Wed, Oct 29, 2008 at 7:26 PM, Nathaniel Echols
<nat...@gm...> wrote:
> On Wed, Oct 29, 2008 at 11:39 AM, Thomas S. Leyh, Ph. D. <le...@ae...>
> wrote:
>>
>>     Every once in a while, I try to show a metal ion as a tranparent
>> sphere and inevetiably get stuck trying to make the tiny cartesian
>> coordinate system that appears at the center of the sphere disappear so it
>> doesn't "show through".  Suggestions?
>
> I think you want "hide nonbonded".
> I have a related question: is there a way (or could there be) to control the
> default appearance of molecules upon loading?  Personally, when I use PyMOL
> I almost always want to look at cartoons, without nonbonded atoms.
>  Something as simple as a few new settings that I could throw in ~/.pymolrc
> would be fine.
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