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Re: [PyMOL] Executing pymol commands without x-windows?
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From: froschkoenig05 <fro...@gm...> - 2008-10-29 21:15:00
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Thanks Tsjerk, this was very helpful!<br>
<br>
Cheers,<br>
Tanja<br>
<br>
Tsjerk Wassenaar wrote:
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cite="mid:8ff...@ma..."
type="cite">
<pre wrap="">Hi Tanja,
Try:
pymol -qcd 'cmd.help("launching")' > pymol_launching.txt
and examine the resulting file :)
Cheers,
Tsjerk
On Wed, Oct 29, 2008 at 7:48 PM, Tanja Mittag <a class="moz-txt-link-rfc2396E" href="mailto:Tan...@gm..."><Tan...@gm...></a> wrote:
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<blockquote type="cite">
<pre wrap="">Hi!
I would like to run pymol scripts on the command line only without
invoking the x-window because there is no need to display the structures
involved (and also no way because I will run this on a Linux computer
cluster). I am only interested in the pymol text output that can be
piped into an output file. For example like this:
Pymol.com script.pml > log.out
I just want to avoid the x-window coming up (and possible errors if it
cannot).
Thanks for your input!
Cheers,
Tanja
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