Re: [PyMOL] iterating over list of objects

Free Api documentation:

#1 is the source code itself (doc strings in modules/pymol/*.py)

#2 are all the commands on pymolwiki.org, which are close to one to  
one with the API

Cheers,
Warren
--
Warren L. DeLano, Ph.D.
wa...@de...

On Feb 27, 2009, at 7:18 AM, "Tsjerk Wassenaar" <ts...@gm...>  
wrote:

> No, but naming is usually fairly intuitive, so you can browse through
> the module properties:
>
> print dir(cmd)
>
> or
>
> /for i in dir(cmd): print i
>
> or even (to get the functions):
>
> /for i in dir(cmd): callable( getattr( cmd, i ) ) and print i
>
> Cheers,
>
> Tsjerk
> On Fri, Feb 27, 2009 at 4:10 PM, Jan Kosinski <ko...@ge...>  
> wrote:
>> Thanks, that works!
>>
>> Is there an API reference to pymol for non-sponsor users?
>>
>>
>> Tsjerk Wassenaar wrote:
>>>
>>> Hi Janek,
>>>
>>> You want:
>>>
>>> cmd.get_object_list()
>>>
>>> For instance, I sometimes want to align a whole lot of things,  
>>> which I do
>>> with:
>>>
>>> /for i in cmd.get_object_list(): cmd.align( i, reference )
>>>
>>> Hope it helps,
>>>
>>> Tsjerk
>>>
>>> On Fri, Feb 27, 2009 at 3:44 PM, Jan Kosinski <ko...@ge...>  
>>> wrote:
>>>
>>>>
>>>> Hi,
>>>>
>>>> I wish to iterate over all objects in my pymol session and for each
>>>> execute some command. Is it possible to do that using pymol  
>>>> commands?
>>>>
>>>> I could do that using python script but: How can I get a list of  
>>>> current
>>>> objects?
>>>>
>>>> Cheers,
>>>> Janek
>>>>
>>>>
>>>> --- 
>>>> --- 
>>>> --- 
>>>> --- 
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>>>>
>>>>
>>>
>>>
>>>
>>>
>>
>>
>
>
>
> -- 
> Tsjerk A. Wassenaar, Ph.D.
> Junior UD (post-doc)
> Biomolecular NMR, Bijvoet Center
> Utrecht University
> Padualaan 8
> 3584 CH Utrecht
> The Netherlands
> P: +31-30-2539931
> F: +31-30-2537623
>
> --- 
> --- 
> --- 
> ---------------------------------------------------------------------
> Open Source Business Conference (OSBC), March 24-25, 2009, San  
> Francisco, CA
> -OSBC tackles the biggest issue in open source: Open Sourcing the  
> Enterprise
> -Strategies to boost innovation and cut costs with open source  
> participation
> -Receive a $600 discount off the registration fee with the source  
> code: SFAD
> http://p.sf.net/sfu/XcvMzF8H
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users
>
>