Re: [PyMOL] surface properties

Hi Mark,

I remember that Kristian Rother's rTools could do hydrophobicity coloring:
http://www.rubor.de/pymol_extensions.html
it is some years ago, so maybe it needs some updateing..

Best,
Andreas

DeLano Scientific wrote:
> Mark,
>
> PyMOL does not have such abilities at present.  
>
> Can such concepts even be defined in a precise, objective, and unambiguous
> fashion?  
>
> Cheers,
> Warren
>
> --
> DeLano Scientific LLC
> Subscriber Support Services
> mailto:su...@de...
>
>   
>> -----Original Message-----
>> From: Mark Collins [mailto:mn...@co...] 
>> Sent: Thursday, December 18, 2008 7:38 AM
>> To: pym...@li...
>> Subject: [PyMOL] surface properties
>>
>> Hi All
>> I have searched thru the archive and couldn't find an answer, 
>> to this.  I would like to make pymol surface(s) colored by 
>> (1) hydrophobicity and (2) concavity/convexity.
>> These are easily produced in grasp, so one possibility maybe 
>> to import some type of grasp file.
>> Thanks in advance for suggestions, websites, or tutorials, etc.
>> Mark
>>
>> --------------------------------------------------------------
>> ----------------
>> SF.Net email is Sponsored by MIX09, March 18-20, 2009 in Las 
>> Vegas, Nevada.
>> The future of the web can't happen without you.  Join us at 
>> MIX09 to help pave the way to the Next Web now. Learn more 
>> and register at 
>> http://ad.doubleclick.net/clk;208669438;13503038;i?http://2009
>> .visitmix.com/
>> _______________________________________________
>> PyMOL-users mailing list
>> PyM...@li...
>> https://lists.sourceforge.net/lists/listinfo/pymol-users
>>     
>
>
> ------------------------------------------------------------------------------
> SF.Net email is Sponsored by MIX09, March 18-20, 2009 in Las Vegas, Nevada.
> The future of the web can't happen without you.  Join us at MIX09 to help
> pave the way to the Next Web now. Learn more and register at
> http://ad.doubleclick.net/clk;208669438;13503038;i?http://2009.visitmix.com/
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users
>   

-- 
Andreas Henschel
Bioinformatics Group
TU Dresden
Tatzberg 47-51
01307 Dresden, Germany

Phone: +49 351 463 40063
EMail: ah...@bi...