Re: [PyMOL] some help

Hi Thomas,

> To address your question, it is not possible to my knowledge to upload
> a sequence only to PyMOL. Keep in mind that PyMOL is a molecular
> viewer, not a sequence viewer.  If you want to see your sequence, you
> probably would have to create a 3D model of your sequence (e.g. using
> MODELLER).

You can load FASTA files into PyMOL.  Good luck understanding the
results though.  For example:

# fetch a protein and save its sequence
fetch 1cll, async=0
save 1cll.fasta, 1cll

# delete everything & load the FASTA file
dele *
load 1cll.fasta

Cheers,

-- Jason

-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) Jas...@sc...
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