Re: [PyMOL] morpheasy

Hi Mehmet,

secondary structure is not a per-state property unless the object has
discrete states. Just write out the multi-state file and load it in
again as discrete:

PyMOL> save yourmorph.pdb, yourmorph, state=0
PyMOL> delete yourmorph
PyMOL> load yourmorph.pdb, discrete=1
PyMOL> dss

There was almost the same question two days ago (Subject: SS in a
trajectory).

Cheers,
  Thomas

vapour wrote, On 04/26/13 17:05:
> Hi,
> 
> I am trying to generate a movie which shows a conformational change
> of my protein. In there, I have one helix unwinding completely and loses
> its helicity. When I do morpheasy, the secondary structure of this helix
> from the starting conformation is still preserved and not converted into
> the loop conformation at the end of the movie. How can I depict this
> change of secondary structure with the morpheasy?
> 
> Cheers,
> mehmet

-- 
Thomas Holder
PyMOL Developer
Schrödinger Contractor