Re: [PyMOL] ribbon trace, visualizing polymers (resent)

Hi Erik,

Can you please send me a copy of one of the problematic sessions?

Cheers,

-- Jason

On Tue, Nov 27, 2012 at 11:23 AM, Erik Nelson <nel...@gm...> wrote:
>
> I use pymol to generate images of simple polymers by loading their
> coordinates as
> .pdb files. The 'polymer .pdb' files contain only alpha carbon coordinates.
> I connect
> them using the ribbon_trace option, and color them by varying b-factors in
> the .pdb
> file.
>
> I had created many different movies and figures this way, and I saved the
> sessions
> as .pse files. Just recently, I went back to view some of these sessions and
> they just
> loaded as blank screens.
>
> I tried creating more images as before - using the ribbon_trace option to
> connect the
> atoms - but it no longer works.
>
> I'm pretty sure I didn't change any options in pymol, so I'm wondering if
> pymol
> somehow updated itself, or some update of my mac airbook affected the pymol
> program. Neither of these seems very likely.
>
> What went wrong? Is there a way I can fix this?
>
> A more general question. It seems like there must be a better way to
> visualise a
> polymer, say as a ball an stick image. Is there a more straight forward way
> of doing
> this in pymol?
>
> Thanks, Erik
>
> --
> Erik Nelson
>
> Howard Hughes Medical Institute
> 6001 Forest Park Blvd., Room ND10.124
> Dallas, Texas 75235-9050
>
> p : 214 645 5981
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-- 
Jason Vertrees, PhD
Director of Core Modeling Product Management
Schrödinger, Inc.

(e) Jas...@sc...
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