Re: [PyMOL] representing missing residues in pymol

Dear Steinberg

Thank you very much for the idea

Best Regards
Priyan

On Thu, Sep 25, 2014 at 7:33 PM, H. Adam Steinberg <
h.a...@gm...> wrote:

> This is not as simple as you would like but PyMOL does have the ability to
> manually build in missing atoms. And this feature allows you to manually
> fill in missing sequences. I have used it many times to make a specific
> point, noting that the missing AAs were manually added to the figure.
>
> On Sep 25, 2014, at 8:38 AM, ccp4 pymol <ccp...@gm...> wrote:
>
> Thank you Thomas.
>
> Best Regards
> Priyan
>
> On Thu, Sep 25, 2014 at 5:23 PM, Thomas Holder <
> tho...@sc...> wrote:
>
>> Hi Priyan,
>>
>> unfortunately PyMOL doesn't have such functionality to include missing
>> atoms in the sequence viewer, neither does it read SEQRES records.
>>
>> Cheers,
>>   Thomas
>>
>> On 21 Sep 2014, at 23:28, Priyadarshan <ccp...@gm...> wrote:
>> > Hello everyone
>> >
>> >  Many a times we have structures solved with residues missing as no
>> electron density was seen. The complete sequence information is given in
>> the SEQRES section of PDB. Is there a way in which we can identify the
>> missing residues readily when we turn on the sequence feature by may be
>> putting it in small letters or italicized etc. This would be like asking
>> pymol to read sequence from SEQRES section and compare it to sequence from
>> the section where coordinates are.
>> >
>> > I am sorry if such a post/request has already been made but I could not
>> find it. Please suggest/direct.
>> >
>> > Thank you.
>>
>> --
>> Thomas Holder
>> PyMOL Developer
>> Schrödinger, Inc.
>>
>>
>
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