Re: [PyMOL] Problem with MacPyMOL's linalg package

Hi Spencer,

thanks for bringing this to our attention. Since OS X 10.9 ships with scipy preinstalled, you can try this workaround which imports scipy from the system python:

import sys
sys.path.insert(1, '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python')
import scipy.linalg

Hope that helps.

Cheers,
  Thomas

On 25 Nov 2014, at 04:46, Spencer Bliven <sb...@uc...> wrote:

> Importing scipy.linalg in MacPyMOL crashes the program for me. Probably the linalg module shipped with MacPyMOL is corrupt or incorrectly linked. I've reproduced it with MacPyMOL 1.6 and 1.7, with both X11 and aqua, and on Mac OS 10.9 and 10.10.
> 
> I discovered this problem because importing the full pymol script repo crashes, due to the pyanm plugin. Maybe this will save someone a headache in the future.
> 
> -Spencer

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.