Re: [PyMOL] Super, algorithm

Hi Spencer,

If you are interested I have implemented a (preliminary version) of a
superposition algorithm (similar to super) using Python/PyMOL.

Cheers,
Osvaldo.



On Wed, Nov 26, 2014 at 2:40 PM, Sampson, Jared <Jar...@ny...>
wrote:

>  Hi Spencer -
>
>  If you need a superposition algorithm with a published reference, try
> CEAlign <." rel="nofollow">http://www.pymolwiki.org/index.php/Cealign>.  Some references
> are listed on the page for the former CEAlign Plugin
> <" rel="nofollow">http://www.pymolwiki.org/index.php/Cealign_plugin#References>  from
> before it was incorporated into PyMOL (in version 1.3).
>
>  Just be careful to note that the order of the first two arguments
> (target, mobile) is switched compared to the `super` and `align` commands
> (mobile, target).
>
>  Cheers,
> Jared
>
>   --
> Jared Sampson
> Xiangpeng Kong Lab
> NYU Langone Medical Center
> http://kong.med.nyu.edu/
>
>
>
>
>
>
>  On Nov 26, 2014, at 7:13 AM, Spencer Bliven <sb...@uc...> wrote:
>
>  I would also be interested if there is any documentation about the super
> algorithm and the differences to align.
>
>  -Spencer
>
> On Fri, Nov 14, 2014 at 10:25 PM, Osvaldo Martin <alo...@gm...>
> wrote:
>
>>  Hi,
>>
>>  Exactly which algorithm is behind the super command? How the outliers
>> pairs are defined?  The is some scientific paper related to super or it is
>> really an experimental idea?
>>
>>  Thanks.
>>
>>
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