From: Osvaldo M. <alo...@gm...> - 2014-11-28 16:51:43
|
Hi Damien, I am not sure if I understood you problem correctly. Have you tried the following commands? set connect_mode, 2 (or other number) load your_pdb_file_name.pdb, discrete=1 Cheers, Osvaldo. On Fri, Nov 28, 2014 at 12:23 PM, Clavel <dc...@ib...> wrote: > Hello PyMOL users, > > I am currently puzzled by the CONECT card and the display of multi-states. > After, many trials I cannot end up with a correct representation of my > work. > > I loaded 9 states to PyMOL made of 2 different PDB files. The second files > of each states contains specific CONECT cards according to the index number > of each atoms (inter residue connection). > > When I run my script, Pymol is working nicely except for the CONECT > cards... > Basically, PyMOL only put in memory the CONECT card of the second files of > the first state and apply it to the rest of the states. > In addition, I tried pdb_ignore_connect and connect_mode... Despites their > fancy names those commands were useless. > > Does someone knows how to force PyMol to read stricly PDB files when > loading multi-states? > > Many thanks. > > -- > *Damien CLAVEL* > PhD student at Laboratoire Chimie Physique (UP Sud) > and Institut de Biologie Structurale (EPN Campus) > -------------------------------------------------------------------------- > Laboratoire de Chimie Physique > <" rel="nofollow">http://www.lcp.u-psud.fr/rubrique.php3?id_rubrique=266/> Institut de > Biologie Structurale <" rel="nofollow">http://www.ibs.fr/spip.php?lang=en> > Bul. 350 Campus Orsay EPN Campus > 15, Av. Jean Perrin 6, rue Jules Horowitz > F-91405 ORSAY Cedex F-38000 GRENOBLE > > [image: Image and video hosting by TinyPic] > <" rel="nofollow">http://tinypic.com?ref=28s7yvd> > > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |