Re: [PyMOL] CONECT card and STATES / damien

Hi Damien,

I am not sure if I understood you problem correctly.  Have you tried the
following commands?

set connect_mode, 2 (or other number)
load your_pdb_file_name.pdb, discrete=1

Cheers,
Osvaldo.


On Fri, Nov 28, 2014 at 12:23 PM, Clavel <dc...@ib...> wrote:

>  Hello PyMOL users,
>
> I am currently puzzled by the CONECT card and the display of multi-states.
> After, many trials I cannot end up with a correct representation of my
> work.
>
> I loaded 9 states to PyMOL made of 2 different PDB files. The second files
> of each states contains specific CONECT cards according to the index number
> of each atoms (inter residue connection).
>
> When I run my script, Pymol is working nicely except for the CONECT
> cards...
> Basically, PyMOL only put in memory the CONECT card of the second files of
> the first state and apply it to the rest of the states.
> In addition, I tried pdb_ignore_connect and connect_mode... Despites their
> fancy names those commands were useless.
>
> Does someone knows how to force PyMol to read stricly PDB files when
> loading multi-states?
>
> Many thanks.
>
> --
> *Damien CLAVEL*
>  PhD student at Laboratoire Chimie Physique (UP Sud)
>                 and Institut de Biologie Structurale (EPN Campus)
> --------------------------------------------------------------------------
>     Laboratoire de Chimie Physique
> <" rel="nofollow">http://www.lcp.u-psud.fr/rubrique.php3?id_rubrique=266/>    Institut de
> Biologie Structurale <" rel="nofollow">http://www.ibs.fr/spip.php?lang=en>
>     Bul. 350 Campus Orsay                 EPN Campus
>     15, Av. Jean Perrin                         6, rue Jules Horowitz
>     F-91405 ORSAY Cedex                 F-38000 GRENOBLE
>
>    [image: Image and video hosting by TinyPic]
> <" rel="nofollow">http://tinypic.com?ref=28s7yvd>
>
>
> ------------------------------------------------------------------------------
> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server
> from Actuate! Instantly Supercharge Your Business Reports and Dashboards
> with Interactivity, Sharing, Native Excel Exports, App Integration & more
> Get technology previously reserved for billion-dollar corporations, FREE
>
> http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>