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Re: [PyMOL] ColorByRMSD script
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From: Guilherme S. <gso...@gm...> - 2016-01-29 13:36:56
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I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'? And should I expect to see my both protein structures colored in the PyMOL interface? Thank you! 2016-01-29 11:36 GMT-02:00 Guilherme Souza <gso...@gm...>: > I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'? > And should I expect to see my both protein structures colored in the PyMOL > interface? > > 2016-01-29 11:35 GMT-02:00 Guilherme Souza <gso...@gm...>: > >> I'm sorry.. Where exactly am I supposed to type 'run colorbyrmsd.py'? >> And should I expect to see my both protein structures colored in the >> PyMOL interface? >> >> Thank you! >> >> 2016-01-29 11:09 GMT-02:00 Schubert, Carsten [JRDUS] < >> CSC...@it...>: >> >>> Hi Guilherme, >>> >>> >>> >>> the script is not a plugin, so you cannot install it since it is missing >>> some software infrastructure to work as a plugin. Simply put the script >>> into the directory you are working in and run it via ‘run colorbyrmsd.py’ . >>> This will add the command to the scripting interface and you can run the >>> command like any other pymol command. See the wiki for the details in that >>> regards. >>> >>> >>> >>> HTH >>> >>> >>> >>> Carsten >>> >>> >>> >>> *From:* Guilherme Souza [mailto:gso...@gm...] >>> *Sent:* Friday, January 29, 2016 7:07 AM >>> *To:* pym...@li... >>> *Subject:* [PyMOL] ColorByRMSD script >>> >>> >>> >>> Hi. >>> >>> >>> >>> I'm a starter in PyMOL, and I'm trying to use this script, ColorByRMSD ( >>> http://www.pymolwiki.org/index.php/ColorByRMSD). However, I'm getting >>> the following error message, when I initialize PyMOL after installing the >>> plugin: >>> >>> >>> >>> Exception in plugin 'colorbyrmsd' -- Traceback follows... >>> >>> Traceback (most recent call last): >>> >>> File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pmg_tk\PMGApp.py", >>> line 313, in initializePlugins >>> >>> __builtin__.__import__(mod_name) >>> >>> SyntaxError: future feature print_function is not defined >>> (colorbyrmsd.py, line 10) >>> >>> Error: unable to initialize plugin 'colorbyrmsd'. >>> >>> >>> >>> I'm using Python 2.7, and I've already checked '__future__' module, and >>> 'print_function' is there, so I don't know what could be causing this. >>> >>> >>> >>> I'd be glad if anyone could give me a help. >>> >>> >>> >>> Thank you. >>> >> >> > |