Re: [PyMOL] Alignment of two proteins

Hi Amin,

It worked. Many Thanks

Cheers
Mohsen

From: am...@im... [mailto:am...@im...]
Sent: Thursday, 25 February 2016 10:24 PM
To: pym...@li...
Subject: Re: [PyMOL] Alignment of two proteins


Hi. I think

align 4mt1 & chain A, 3aob & chain B

should work.

Amin.

On 2016-02-25 17:02, Mohsen Chitsaz wrote:
Hi Julian,

I have two homotrimer proteins, i.e. 3aob and 4mt1. I want to align chain A of 4mt1 to chain B of 3aob. How to tell Pymol to align a specific chain or part of a protein, in my case chain A of 4mt1, to a specific chain or part of another protein, in my case chain B of 3aob?

Cheers
Mohsen

From: Mohsen Chitsaz
Sent: Wednesday, 24 February 2016 11:17 PM
To: 'Julian Heinrich' <ju...@jo...<mailto:ju...@jo...>>
Cc: pym...@li...<mailto:pym...@li...>
Subject: RE: [PyMOL] Appending a pdb file

Hi Julian,

Many Thanks for your help. It worked.

Cheers
Mohsen

From: jul...@gm...<mailto:jul...@gm...> [mailto:jul...@gm...] On Behalf Of Julian Heinrich
Sent: Monday, 22 February 2016 8:24 PM
To: Mohsen Chitsaz <moh...@fl...<mailto:moh...@fl...>>
Cc: pym...@li...<mailto:pym...@li...>
Subject: Re: [PyMOL] Appending a pdb file

Hi Mohsen,

if you want to superimpose structures, have a look at the align command:
http://pymolwiki.org/index.php/Align

Cheers,
Julian

On Thu, Feb 18, 2016 at 10:47 PM, Mohsen Chitsaz <moh...@fl...<mailto:moh...@fl...>> wrote:
Hi

In order to superimpose two protein sequences, I am trying to append a pdb file to an existing protein sequence, which I have already opened in PyMol. The append function is not working in my PyMol. Could someone help me with this please.

Cheers
Mohsen

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