From: Vijay M. <vij...@gm...> - 2016-03-22 14:01:37
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Dear PyMol Users While working with a ligand in a pdb file, which I saved in .mol2 file format, I used following command: get_bond stick_transparency, * I observed following outcome in Pymol. Getting: stick_transparency for 63 bonds in object "testing". stick_transparency = 0.00000 for object testing I know that PyMol can count atoms; the above command is providing counting of bonds in a molecule. It will be a great help if someone can tell me the pymol command or API for counting of Bonds in an object loaded in pymol viewer. Thanks in advance. From Vijay -- Assistant Professor Department of Chemistry, Vidya Bharati College, Amravati, 444 602 Maharashtra, India. Phone number- +91-9403312628 https://sites.google.com/site/vijaymasand/ |