Re: [PyMOL] get_bond bond counting in PyMol

Dear PyMol Users,

I found an easy way to count total number of bonds in a molecule,
which has been loaded in PyMol viewer:

from chempy import stored, Bond
m = cmd.get_model()
print “number of total bonds:”, len(m.bond)

I hope it will be useful.

Cheers
Vijay


On 3/22/16, Vijay Masand <vij...@gm...> wrote:
> Dear PyMol Users
>
> While working with a ligand in a pdb file, which I saved in .mol2 file
> format, I used following command:
>
>                       get_bond stick_transparency, *
>  I observed following outcome in Pymol.
>                      Getting: stick_transparency for 63 bonds in
> object "testing".
>                      stick_transparency = 0.00000 for object testing
>
> I know that PyMol can count atoms; the above command is providing
> counting of bonds in a molecule. It will be a great help if someone
> can tell me the pymol command or API for counting of Bonds in an
> object loaded in pymol viewer.
>
> Thanks in advance.
>
> From
> Vijay
>
>
> --
> Assistant Professor
> Department of Chemistry,
> Vidya Bharati College, Amravati, 444 602
> Maharashtra, India.
> Phone number- +91-9403312628
> https://sites.google.com/site/vijaymasand/
>


-- 
Assistant Professor
Department of Chemistry,
Vidya Bharati College, Amravati, 444 602
Maharashtra, India.
Phone number- +91-9403312628
https://sites.google.com/site/vijaymasand/