Re: [PyMOL] Scripts don't work any longer after upgrade to v1.8.4

Hi Thomas,

Yeah, this one catches me off-guard now and again. Chain labels were made
case-sensitive, as assemblies sometimes become so large that more than 26
labels are required. So, you'll probably need to specify 'chain A' in stead
of 'chain a'.

Hope it helps,

Tsjerk

On Mon, Nov 28, 2016 at 3:13 PM, <Reu...@mh...> wrote:

> Dear Tsjerk,
>
> thank you for your reply.
>
>
>
> The very simple script
>
>
>
> bg_color white
>
> load 2j6o-coot-0.pdb
>
>
>
> works fine as the pdb-file is loaded and displayed as line model (as it
> should) with v.1.8.40.
>
>
>
> Adding the line
>
>
>
> select SH3, resi 2-58 and chain a
>
>
>
> yields  a selection called SH3 (as expected) but this does not contain any
> atoms. As I already wrote, the same script (plus lots of additional lines)
> works flawlessly using v1.8.07.
>
>
>
> I will be happy about any possibly helpful suggestion.
>
>
>
> Best
>
> Thomas
>
>
>
>
>
>
>
> *Von:* Tsjerk Wassenaar [mailto:ts...@gm...]
> *Gesendet:* Donnerstag, 24. November 2016 15:36
> *An:* Reubold, Thomas Dr.
> *Cc:* pymol-users
> *Betreff:* Re: [PyMOL] Scripts don't work any longer after upgrade to
> v1.8.4
>
>
>
> Hi Thomas,
>
>
>
> Can you give more information? What is in the script? Is something written
> in the terminal?
>
> FWIW, I have not encountered problems, and certainly not with selections.
> My guess is that the script breaks before getting to the selection.
>
>
>
> Cheers,
>
>
>
> Tsjerk
>
>
>
> On Thu, Nov 24, 2016 at 2:13 PM, <Reu...@mh...> wrote:
>
> Hello all,
>
>
>
> after installation of Pymol v.1.8.4 on our Linux system, scripts that used
> to work fine with v.1.8.0.7 do not work anymore. Even a simple selection
> does not work.
>
> Is this a known problem? If so, is there a way to fix it?
>
> Any help is greatly appreciated.
>
>
>
> Best,
>
> Thomas
>
>
> ------------------------------------------------------------
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>
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>
>
>
>
>
> --
>
> Tsjerk A. Wassenaar, Ph.D.
>



-- 
Tsjerk A. Wassenaar, Ph.D.