Re: [PyMOL] Segmentation fault

Hi João,

On Ubuntu 16.04 (you didn't mention what you were running) with gcc-4.9 
and "--use-msgpackc=no" I get a working pymol with revision 4170.

Have you tried creating a new user and test pymol from that account? 
That should help you identify if it is solely a problem with your own 
account.

HTH,
Folmer

On 2017-03-28 03:15, João M. Damas wrote:
> Nobody experiencing the same issues? Any tips on what I may be doing 
> wrong on the installation?
>
> João
>
> On Fri, Mar 17, 2017 at 4:08 PM, João M. Damas <jm...@it... 
> <mailto:jm...@it...>> wrote:
>
>     Dear all,
>
>     I started experiencing segmentation fault on a pymol that I had
>     installed through the omnia channel on conda.
>
>     Then, I decided to install from scratch using this recipe:
>     https://pymolwiki.org/index.php/Linux_Install#Get_latest_source_from_SVN
>     <" rel="nofollow">https://pymolwiki.org/index.php/Linux_Install#Get_latest_source_from_SVN>
>
>     Still getting the segmentation fault, so maybe something changed
>     in my system and it's conflicting with?
>
>     The segmentation fault is not on launching PyMOL, but rather when
>     I do stuff: loading a PDB file, building a fragment. Like this:
>
>     ```
>     ./pymol: line 3: 28505 Segmentation fault  "/usr/bin/python2.7"
>     "/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py"
>     "$@"
>     ```
>
>     Curiously, when I load a 1.740 session (.pse file I had saved), it
>     works (no segmentation fault), I can even perform commands like
>     select and stuff, and they work. If I load a more recent 1.803
>     session, it also seg faults:
>
>     ```
>      Executive: Loading version 1.803 session...
>     ./pymol: line 3: 29221 Segmentation fault  "/usr/bin/python2.7"
>     "/data/joao/maindisk/software/pymol-svn/modules/pymol/__init__.py"
>     "$@"
>     ```
>
>     Any clues? Am I doing something wrong?
>
>     Thanks,
>     João
>
>     -- 
>     João M. Damas
>     PhD Student
>     Protein Modelling Group
>     ITQB-UNL, Oeiras, Portugal
>     Tel:+351-214469613 <tel:21%20446%209613>
>
>
>
>
> -- 
> João M. Damas
> PhD Student
> Protein Modelling Group
> ITQB-UNL, Oeiras, Portugal
> Tel:+351-214469613
>
>
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