Re: [PyMOL] Cavity display?

I was looking for such a program couple of days ago, and I found "pass".

http://www.ccl.net/cca/software/UNIX/pass/overview.shtml

I saw the cavities in couple of minutes in pymol :) I'm not familiar with
voidoo, so I don't know if you will find this usefull or not...

My current problem is related to this one, so I'll post it here also.
I would like to calculate surface of the cavity with pymol and show this =
as
a cavity going in to the protein. But the surface is all grey, because it
is the "inside". Is there a way to map the colours also to the other side
of the surface?

best regards,

~Lari~


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Lari Lehti=F6
University of Helsinki
Institute of Biotechnology
Macromolecular X-ray crystallography
P.O.Box 65
00014 HY
Finland
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Quoting Dirk Kostrewa <dir...@ps...>:

# Dear PyMol users,
#=20
# I'm looking for a program that can calculate and write out cavities in =
a
#=20
# format that can be converted such that I can display it with PyMol (I'm
# not=20
# satisfied with the results from VOIDOO). Could you please send me any
# pointer=20
# to a program that you found useful? BTW, this would be my wish for a
# next=20
# release of PyMol!
#=20
# Best regards,
#=20
# Dirk.
#=20
# --=20
#=20
# ****************************************
# Dirk Kostrewa
# Paul Scherrer Institut
# Life Sciences, OFLC/110
# CH-5232 Villigen PSI, Switzerland
# Phone: 	+41-56-310-4722
# Fax: 	+41-56-310-5288
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