RE: [PyMOL] Cavity display?

Related the issue of inside-surface coloring, a useful feature to add to =
pymol would be the ability to flip surface normals for selected =
surfaces.

Just a thought.

JP Cartailler

> -----Original Message-----
> From: pym...@li... [mailto:pymol-users-
> ad...@li...] On Behalf Of Lari Lehti=F6
> Sent: Thursday, July 22, 2004 9:07 AM
> To: Dirk Kostrewa
> Cc: PyMOLBB
> Subject: Re: [PyMOL] Cavity display?
>=20
> I was looking for such a program couple of days ago, and I found =
"pass".
>=20
> http://www.ccl.net/cca/software/UNIX/pass/overview.shtml
>=20
> I saw the cavities in couple of minutes in pymol :) I'm not familiar =
with
> voidoo, so I don't know if you will find this usefull or not...
>=20
> My current problem is related to this one, so I'll post it here also.
> I would like to calculate surface of the cavity with pymol and show =
this
> as
> a cavity going in to the protein. But the surface is all grey, because =
it
> is the "inside". Is there a way to map the colours also to the other =
side
> of the surface?
>=20
> best regards,
>=20
> ~Lari~
>=20
>=20
> =
=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=
=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB
> Lari Lehti=F6
> University of Helsinki
> Institute of Biotechnology
> Macromolecular X-ray crystallography
> P.O.Box 65
> 00014 HY
> Finland
> =
=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=
=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB=BB
>=20
> Quoting Dirk Kostrewa <dir...@ps...>:
>=20
> # Dear PyMol users,
> #
> # I'm looking for a program that can calculate and write out cavities =
in a
> #
> # format that can be converted such that I can display it with PyMol =
(I'm
> # not
> # satisfied with the results from VOIDOO). Could you please send me =
any
> # pointer
> # to a program that you found useful? BTW, this would be my wish for a
> # next
> # release of PyMol!
> #
> # Best regards,
> #
> # Dirk.
> #
> # --
> #
> # ****************************************
> # Dirk Kostrewa
> # Paul Scherrer Institut
> # Life Sciences, OFLC/110
> # CH-5232 Villigen PSI, Switzerland
> # Phone: 	+41-56-310-4722
> # Fax: 	+41-56-310-5288
> # E-mail:	dir...@ps...
> # http://sb.web.psi.ch
> # ****************************************
> #
> #
> #
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>=20
>=20
>=20
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