ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines.

For more information check the README.md in the Files section.

How to cite ADOMA:

Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083

http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

Project Samples

Default ClustalW output in HTML format with DNA sequences from the IPD KIR database Simplified ClustalW output in HTML format with DNA sequences from the IPD KIR database Colored ClustalW output in HTML format with protein sequences from the IPD KIR database

Project Activity

See All Activity >

Categories

Bio-Informatics, Data Visualization, Command Line Tools

License

GNU General Public License version 3.0 (GPLv3)

Follow ADOMA

ADOMA Web Site

You Might Also Like
Relax: PRTG Monitors Your IT for You Icon
Relax: PRTG Monitors Your IT for You

Stay in control and avoid IT headaches. PRTG monitors your network, devices, and apps - receive alerts when it matters most.

You’re the go-to IT person, always putting out fires and keeping things running. With PRTG, you get reliable alerts to monitor your entire IT infrastructure, without the noise. Our intuitive setup gives you a clear overview of your network, devices, and applications in real time. Get instant alerts only when something needs your attention, whether you’re at your desk or on the move. Spend less time worrying about outages and more time focusing on what matters. Set up PRTG once and let it work for you - PRTG has you covered.
Start Your Free PRTG Trial Now
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of ADOMA!

Additional Project Details

Operating Systems

Linux

User Interface

Command-line

Programming Language

Python, Unix Shell

Related Categories

Unix Shell Bio-Informatics Software, Unix Shell Data Visualization Software, Unix Shell Command Line Tools, Python Bio-Informatics Software, Python Data Visualization Software, Python Command Line Tools

Registered

2014-11-25
Report inappropriate content