mPSQed Files

Alignment editor and multiplex pyrosequencing assay designer

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Name	Modified	Size	InfoDownloads / Week
mPSQed 0.9.3	2012-04-12		0
Exemplary data	2012-01-12		0
mPSQed 0.9.2	2012-01-12		0
Totals: 3 Items			0

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MSP-HTPrimer
MSP-HTPrimer is an open source, web-based high-throughput and genome-wide primer design pipeline for bisulfite-based assays (MSP, BSP and COBRA) and MSRE-PCR assay and capable of simultaneously processing hundreds to thousands of target sequences. MSP-HTPrimer takes genome-wide annotations of...
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inGAP
We developed a novel mining pipeline, inGAP, which is guided by a Bayesian principle to detect single nucleotide polymorphisms, insertion and deletions by comparing high-throughput pyrosequencing reads with a reference genome of related organisms.
FullSSR
Traditional methods for isolation of microsatellites (SSRs) are often expensive and time consuming. Nowadays is easier and cheaper to obtain genomic data from next generation sequencing. Then, at least two software need to be applied in order to obtain SSR primers of SSR flanking sequences for...
MPprimer
Background: Multiplex PCR, defined as the simultaneous amplification of multiple regions of a DNA template using more than one primer set (comprising a forward primer and a reverse primer) in one tube, has been widely used in clinical and environmental microbiology studies. However, primer...

mPSQed Files

Alignment editor and multiplex pyrosequencing assay designer

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