The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.
Get an email when there's a new version of SAM tools
| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| README.txt | 2024-01-22 | 2.0 kB | |
| samtools-1.19.1.tar.bz2 | 2024-01-22 | 9.2 MB | |
| htslib-1.19.1.tar.bz2 | 2024-01-22 | 4.8 MB | |
| Totals: 3 Items | 13.9 MB | 0 | |
------------------------------------------------------------------------------ htslib - changes v1.19.1 ------------------------------------------------------------------------------ * Fixed a regression in release 1.19 that caused all aux records to be stored uncompressed in CRAM files. The resulting files were correctly formatted, but bigger than they needed to be. (PR#1729, fixes samtools#1968. Reported by Clockris) * Fixed possible out-of-bounds reads due to an incorrect check on B tag lengths in cram_encode_aux(). (PR#1725) * Fixed an incorrect check on tag length which could fail to catch a two byte out-of-bounds read in bam_get_aux(). (PR#1728) * Made errors reported by hts_open_format() less confusing when it can't open the reference file. (PR#1724, fixes #1723. Reported by Alex Leonard) * Made hts_close() fail more gracefully if it's passed a NULL pointer (PR#1724) ------------------------------------------------------------------------------ samtools - changes v1.19.1 ------------------------------------------------------------------------------ Bug Fixes: * Fixed a possible array bounds violation when looking up regions in a BED file (e.g. using `samtools view -L`). This could lead to crashes or the return of incomplete results if the BED file contained a large number of entries all referencing low positions on a chromosome. (PR #1962, fixes #1961. Reported by geertvandeweyer) * Fixed a crash in samtools stats that occurred when trying to clean up after it was unable to open a CRAM reference file. (PR #1957, fixes crash reported in samtools/htslib#1723. Reported by Alex Leonard) Documentation: * Fixed inverted logic in the `samtools consensus --show-del` manual page description. (PR #1955, fixes #1951. Reported by Mikhail Schelkunov) * Added a description of the MPC section to the `samtools stats` manual page. (PR #1963, fixes #1954. Reported by litun-fkby)